View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0733_low_13 (Length: 533)
Name: NF0733_low_13
Description: NF0733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0733_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 254; Significance: 1e-141; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 75 - 438
Target Start/End: Original strand, 28614654 - 28615017
Alignment:
| Q |
75 |
ggagcagagaaggaaggttacnnnnnnngccaaagaggaagaaaatataggaacagcattagaccaaatagagtcactggctctggattttggaaagcaa |
174 |
Q |
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| T |
28614654 |
ggagcagaaaaggaaggttactttttttgccaaagaggaagaaaatataggaacagcgttaggccaaatagagtgactggctctggattctggaaagcaa |
28614753 |
T |
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| Q |
175 |
ctggaatagacaaacagatatattcaaatggaggagaaggaaatgattgtgttggactcnnnnnnncacttgtctactaccgtggtagtgccggaaaagg |
274 |
Q |
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| T |
28614754 |
ctggaatagacaaagcaatttactcaaatggagcagaaggaaatgattgtgttggactcaaaaaaacacttgtttactatcgtggtagtgccggaaaagg |
28614853 |
T |
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| Q |
275 |
taccaaaactgattggatgatgcatgagtttcgtcttccatcaaacagtgatgccaaaacaaacatttcctatcctaagaatgttgctgattatgctcat |
374 |
Q |
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| T |
28614854 |
caccaaaactgattggatgatgcatgagtttcgtcttccatcaaacattgatgccaaaacaaacatttcctatcctaagaatgttgctgattatgctcat |
28614953 |
T |
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| Q |
375 |
gaagctgtaagtaacgtacataagacctaccaaatttttacaaatttttatgcgacaatatttg |
438 |
Q |
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| T |
28614954 |
gaagctgtaagtaacttacataagacctaccaaatttttacaaatttttatgctacaatatttg |
28615017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 74 - 389
Target Start/End: Original strand, 28629178 - 28629493
Alignment:
| Q |
74 |
aggagcagagaaggaaggttacnnnnnnngccaaagaggaagaaaatataggaacagcattagaccaaatagagtcactggctctggattttggaaagca |
173 |
Q |
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| T |
28629178 |
aggagcagagaaggaaggttactttttttgccaaagaggaagaaaatataggaacagcgttagaccaaatagagtgactggctctggattctggaaagca |
28629277 |
T |
|
| Q |
174 |
actggaatagacaaacagatatattcaaatggaggagaaggaaatgattgtgttggactcnnnnnnncacttgtctactaccgtggtagtgccggaaaag |
273 |
Q |
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| T |
28629278 |
actggaatagacaaagcaatatactcaaatggagcagaaggaaatgattgtgttggactcaaaaaaacacttgtttactatcgcggtagtgccggaaaag |
28629377 |
T |
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| Q |
274 |
gtaccaaaactgattggatgatgcatgagtttcgtcttccatcaaacagtgatgccaaaacaaacatttcctatcctaagaatgttgctgattatgctca |
373 |
Q |
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| T |
28629378 |
gcaccaaaactgattggatgatgcatgagtttcgtcttccatcaaacattgatgccaaaacaaacatttcctatcctaggaatgatgctgattatgctca |
28629477 |
T |
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| Q |
374 |
tgaagctgtaagtaac |
389 |
Q |
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| T |
28629478 |
tgaagctgtaagtaac |
28629493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 446 - 533
Target Start/End: Original strand, 28615072 - 28615156
Alignment:
| Q |
446 |
tatgagggtttcatattagatttagatacgatcatgaccggataatgtgttatatgtgagagttatccctcaccttatcaataggttt |
533 |
Q |
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| T |
28615072 |
tatgagggtttcatattagatttagatatgat---gaccggataatgtgttatatgtgagagttatccctcaccttatcaataggttt |
28615156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 107 - 172
Target Start/End: Original strand, 39633497 - 39633562
Alignment:
| Q |
107 |
aagaggaagaaaatataggaacagcattagaccaaatagagtcactggctctggattttggaaagc |
172 |
Q |
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| T |
39633497 |
aagaggaagaaaatataggaacagcataaggcctaatagagtgacaggatctggattttggaaagc |
39633562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 252 - 310
Target Start/End: Original strand, 39633639 - 39633697
Alignment:
| Q |
252 |
taccgtggtagtgccggaaaaggtaccaaaactgattggatgatgcatgagtttcgtct |
310 |
Q |
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| T |
39633639 |
taccgtggaagtgcagggaaaggcaccaaaactgattggatgatgcatgaatttcgtct |
39633697 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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