View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0733_low_130 (Length: 238)
Name: NF0733_low_130
Description: NF0733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0733_low_130 |
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Alignment Details
Target: chr5 (Bit Score: 107; Significance: 9e-54; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 21 - 155
Target Start/End: Original strand, 41531253 - 41531387
Alignment:
| Q |
21 |
atcctcatgcctactattgtgttaccattggaatcttctatctataaattgaaagcaaaacattttattcatcacacacacaccaaaatcttaaatcgtc |
120 |
Q |
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| T |
41531253 |
atcctcatgcccactattgtgttaccattggaatcttctatctataaattgaaagcaaaacattttattcatcacataaacaccgaaatcataaattgtc |
41531352 |
T |
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| Q |
121 |
tataactaatatctttagtgtttttcatctcactc |
155 |
Q |
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| T |
41531353 |
tataactaatatctttagtgtttttcctctcactc |
41531387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 157 - 226
Target Start/End: Complemental strand, 4315282 - 4315213
Alignment:
| Q |
157 |
accaggaaaagcacgtagcaaacgctcacgcgctgcacctggcgactggtccacgcgcctacttcatctc |
226 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4315282 |
accaggaaaagcacgtagcaaacgctcacgcgctgcacctggcgactggtccacgcgcctacttcatctc |
4315213 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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