View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0733_low_133 (Length: 235)
Name: NF0733_low_133
Description: NF0733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0733_low_133 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 2 - 235
Target Start/End: Original strand, 13863802 - 13864035
Alignment:
| Q |
2 |
aaattcaataaaagagtatgattcaatttcttctttcgtatgaatttgaacagaatttcatgaactcaaaccaaaccaagttgagctacacatcctcacc |
101 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
13863802 |
aaattcaataaaagggtatgattcaatttcttctttcgtatgaatttgaacagaatttcattaactcaaaccaaaccaagttgagctacacatcctcacc |
13863901 |
T |
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| Q |
102 |
ttatagccatacaaattctctttaaacggtgtgggacttcagcctctgttgctgctggtttcaagtccaaattctctttccaaaagcaatagcacgtagt |
201 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
13863902 |
ttatagccctacaaattctctttaaacggtgtgggacttcagcctctgttgctgctggtttcaagtccaaattctctttccaaaagtaatagcacgtagt |
13864001 |
T |
|
| Q |
202 |
aattagtcaaagctattctctgtttggttttgtt |
235 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
13864002 |
aattagtcaaagctattctctgtttggttttgtt |
13864035 |
T |
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