View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0733_low_146 (Length: 212)
Name: NF0733_low_146
Description: NF0733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0733_low_146 |
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Alignment Details
Target: chr8 (Bit Score: 122; Significance: 9e-63; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 31239723 - 31239844
Alignment:
| Q |
1 |
ctcaaagttgagtttttggctggaaagccacttccatagctggcatagaagccacttccaaaagttctatgaaacccaactttcttttgctgtagctgaa |
100 |
Q |
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| T |
31239723 |
ctcaaagttgagtttttggctggaaagccacttccatagctggcatagaagccacttccaaaagttctatgaaacccaactttcttttgctgtagctgaa |
31239822 |
T |
|
| Q |
101 |
cagtactatacacatttcttgt |
122 |
Q |
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|||||||||||||||||||||| |
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| T |
31239823 |
cagtactatacacatttcttgt |
31239844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 30 - 91
Target Start/End: Complemental strand, 7914163 - 7914102
Alignment:
| Q |
30 |
acttccatagctggcatagaagccacttccaaaagttctatgaaacccaactttcttttgct |
91 |
Q |
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|||| ||||||||||||| ||||||| |||||||||||||| || | | |||||||||||| |
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| T |
7914163 |
actttcatagctggcataaaagccacatccaaaagttctataaaccttatctttcttttgct |
7914102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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