View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0733_low_16 (Length: 518)
Name: NF0733_low_16
Description: NF0733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0733_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 438; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 60 - 509
Target Start/End: Complemental strand, 51687449 - 51687000
Alignment:
| Q |
60 |
ggtgttgaattggaacctaactctaacaagcgtaaaaatcgacaagttcatcaagagattcaggttgaggatcagcattttcaagcatccataacaaatg |
159 |
Q |
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| T |
51687449 |
ggtgttgaattggaagctaactctaacaagcgtaaaaatcgacaagttcatcaagagattcaggttgaggatcagcattttcaagcatccataacaaatg |
51687350 |
T |
|
| Q |
160 |
ttcgaaaaggacaacctcacaagcaacaacattgacagtgtcgttttgttgttcggtttcacgggacctttcaacgagttcacggaagacagggttgtca |
259 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51687349 |
ttcgaaaaggacaacctcacaagcaacaacattgacagtgtcgttttgttgttctgtttcacgggacctttcaacgagttcacggaagacagggttgtca |
51687250 |
T |
|
| Q |
260 |
acaacgtcggaggtgacacggtagaggcggcgagattttcctacgaagacggtgtggaggtcggatcttgaagacgatgagtcttcgtcggcgacggcgc |
359 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51687249 |
acaacgtcggaggtgacacggtagaggcggcgagactttcctacgaagacggtgtggaggtcggatcttgaagacgatgagtcttcgtcggcgacggcgc |
51687150 |
T |
|
| Q |
360 |
tgatgctgtgacggctctgttttccgtttccaaatgagttccattttttgagtgctgattttagcttcattagctttccaccttttgccatgtttggttt |
459 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51687149 |
tgatgctgtgacggctctgttttccgtttccaaatgagttccattttttgagtgctgattttagcttcattagctttccaccttttgccatgtttggttt |
51687050 |
T |
|
| Q |
460 |
gtagtaatacaaatgcaatgaaaatatgtttggttagttattagtattat |
509 |
Q |
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| T |
51687049 |
gtagtaatacaaatgcaatgaaaatatgtttggttagttattagtattat |
51687000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 91 - 183
Target Start/End: Original strand, 19137160 - 19137252
Alignment:
| Q |
91 |
gtaaaaatcgacaagttcatcaagagattcaggttgaggatcagcattttcaagcatccataacaaatgttcgaaaaggacaacctcacaagc |
183 |
Q |
| |
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|||| |||| || |||||||| | ||||| ||||||||||||| ||| |||| |||||| |||| ||| ||||| | ||||||||||||||| |
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| T |
19137160 |
gtaataatcaacgagttcatccaatgattccggttgaggatcagtattctcaatcatccacaacatatgctcgaacaagacaacctcacaagc |
19137252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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