View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0733_low_17 (Length: 518)
Name: NF0733_low_17
Description: NF0733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0733_low_17 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 471; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 8 - 490
Target Start/End: Original strand, 14905253 - 14905735
Alignment:
| Q |
8 |
agattattctcgaagttaccaacatagacatccccattggaatgtgtaaaggtgccgtgaccatgaccaatatcattctcccagtcaccatcaaaatttg |
107 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14905253 |
agattattctcgaagttaccaacgtagacatccccattggaatgtgtaaaggtgccgtgaccatgaccaatatcattctcccagtcaccatcaaaatttg |
14905352 |
T |
|
| Q |
108 |
ctcctgatggatataagatccgccctttacctgtcttttttccgtcaacccagtcaccctcatatatctctccatctgaccatgtgtactttcccttgcc |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14905353 |
ctcctgatggatataagatccgccctttacctgtcttttttccgtcaacccagtcaccctcatatatctctccatctgaccatgtgtactttcccttgcc |
14905452 |
T |
|
| Q |
208 |
atggaaagaaccactcttgaagttaccaatgtagagattcccgttggattgtgtaagggtgccttgaccatgacgggaattcctaaagaattcaccctca |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14905453 |
atggaaagaaccactcttgaagttaccaatgtagagattcccgttggattttgtaagggtgccttgaccatgacgggaattcctaaagaattcaccctca |
14905552 |
T |
|
| Q |
308 |
aaacttgctcctgatggatatatcatccgccctttcccagtcctttctccgtcaacccagtcaccctcatatatctgtccatctgaccatctgtacattc |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14905553 |
aaacttgctcctgatggatatatcatccgccctttcccagtcctttctccgtcaacccagtcaccctcatatatctgtccatctgaccatctgtacattc |
14905652 |
T |
|
| Q |
408 |
ccttgccatgcttatattttcccttgtaaaaaccgacgtagacattcccatttgaaaaatacttcactttaaacctaggcatt |
490 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14905653 |
ctttgccatgcttatattttcccttgtaaaaaccgacgtagacattcccatttgaaaaatacttcactttaaacctaggcatt |
14905735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 137 - 417
Target Start/End: Original strand, 14904761 - 14905041
Alignment:
| Q |
137 |
cctgtcttttttccgtcaacccagtcaccctcatatatctctccatctgaccatgtgtactttcccttgccatggaaagaaccactcttgaagttaccaa |
236 |
Q |
| |
|
|||||| || |||| |||||||| |||||||||||||| | ||||| ||||||||||| ||||| |||||||||||| | || ||||||||||||||| |
|
|
| T |
14904761 |
cctgtccttcttccatcaacccaatcaccctcatatatttttccattcgaccatgtgtattttcctttgccatggaaaagatcattcttgaagttaccaa |
14904860 |
T |
|
| Q |
237 |
tgtagagattcccgttggattgtgtaagggtgccttgaccatgacgggaattcctaaagaattcaccctcaaaacttgctcctgatggatatatcatccg |
336 |
Q |
| |
|
|||||| || ||||||||||| | |||||||| | ||||||||||| |||| ||||||||||||||||||||||| ||||||||||| |||||||||| |
|
|
| T |
14904861 |
tgtagacatccccgttggattttataagggtgtcgtgaccatgacgagaatctttaaagaattcaccctcaaaactttctcctgatggaaatatcatccg |
14904960 |
T |
|
| Q |
337 |
ccctttcccagtcctttctccgtcaacccagtcaccctcatatatctgtccatctgaccatctgtacattcccttgccatg |
417 |
Q |
| |
|
||||||||| ||| ||| ||| ||||||||||||||||||||||| |||||| |||||||| ||||| ||||||||||||| |
|
|
| T |
14904961 |
ccctttccctgtcttttttccatcaacccagtcaccctcatatatttgtccacctgaccatgtgtactttcccttgccatg |
14905041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 8 - 417
Target Start/End: Original strand, 14904839 - 14905248
Alignment:
| Q |
8 |
agattattctcgaagttaccaacatagacatccccattggaatgtgtaaaggtgccgtgaccatgaccaatatcattctcccagtcaccatcaaaatttg |
107 |
Q |
| |
|
|||| ||||| ||||||||||| ||||||||||| ||||| | | ||| |||| |||||||||||| | ||| || | ||||| |||||| || |
|
|
| T |
14904839 |
agatcattcttgaagttaccaatgtagacatccccgttggattttataagggtgtcgtgaccatgacgagaatctttaaagaattcaccctcaaaacttt |
14904938 |
T |
|
| Q |
108 |
ctcctgatggatataagatccgccctttacctgtcttttttccgtcaacccagtcaccctcatatatctctccatctgaccatgtgtactttcccttgcc |
207 |
Q |
| |
|
||||||||||| ||| ||||||||||| |||||||||||||| ||||||||||||||||||||||| | |||| ||||||||||||||||||||||||| |
|
|
| T |
14904939 |
ctcctgatggaaatatcatccgccctttccctgtcttttttccatcaacccagtcaccctcatatatttgtccacctgaccatgtgtactttcccttgcc |
14905038 |
T |
|
| Q |
208 |
atggaaagaaccactcttgaagttaccaatgtagagattcccgttggattgtgtaagggtgccttgaccatgacgggaattcctaaagaattcaccctca |
307 |
Q |
| |
|
||||||| |||| ||| ||||||||||| ||||||| |||||||||| |||||||||| | || ||||||| | ||| | ||||| |||||||| |
|
|
| T |
14905039 |
atggaaaagaccattctcaaagttaccaatatagagatccccgttggatcttgtaagggtgtcgtgtccatgactgatgttcattgagaatccaccctca |
14905138 |
T |
|
| Q |
308 |
aaacttgctcctgatggatatatcatccgccctttcccagtcctttctccgtcaacccagtcaccctcatatatctgtccatctgaccatctgtacattc |
407 |
Q |
| |
|
||||||||| |||||||| | ||||| || |||||||| ||||| ||| | |||||| |||||||||||||| | ||| ||||||||| || || ||| |
|
|
| T |
14905139 |
aaacttgcttctgatggaaagatcattcgtcctttccctgtcctgcttccataaacccaatcaccctcatatatttctccctctgaccatgtgcactttc |
14905238 |
T |
|
| Q |
408 |
ccttgccatg |
417 |
Q |
| |
|
|||||||||| |
|
|
| T |
14905239 |
ccttgccatg |
14905248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 93 - 417
Target Start/End: Original strand, 14905131 - 14905455
Alignment:
| Q |
93 |
caccatcaaaatttgctcctgatggatataagatccgccctttacctgtcttttttccgtcaacccagtcaccctcatatatctctccatctgaccatgt |
192 |
Q |
| |
|
|||| |||||| ||||| |||||||| | | || || ||||| |||||| | |||| | |||||| |||||||||||||| ||||| ||||||||||| |
|
|
| T |
14905131 |
caccctcaaaacttgcttctgatggaaagatcattcgtcctttccctgtcctgcttccataaacccaatcaccctcatatatttctccctctgaccatgt |
14905230 |
T |
|
| Q |
193 |
gtactttcccttgccatggaaagaaccactcttgaagttaccaatgtagagattcccgttggattgtgtaagggtgccttgaccatgacgggaattccta |
292 |
Q |
| |
|
| |||||||||||||||||||| | | ||| ||||||||||| ||||| || ||| ||||| ||||||| |||||| |||||||||| || | |
|
|
| T |
14905231 |
gcactttcccttgccatggaaaagattattctcgaagttaccaacgtagacatccccattggaatgtgtaaaggtgccgtgaccatgaccaatatcattc |
14905330 |
T |
|
| Q |
293 |
aagaattcaccctcaaaacttgctcctgatggatatatcatccgccctttcccagtcctttctccgtcaacccagtcaccctcatatatctgtccatctg |
392 |
Q |
| |
|
| ||||| |||||| |||||||||||||||||| ||||||||||| || ||| ||| ||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
14905331 |
tcccagtcaccatcaaaatttgctcctgatggatataagatccgccctttacctgtcttttttccgtcaacccagtcaccctcatatatctctccatctg |
14905430 |
T |
|
| Q |
393 |
accatctgtacattcccttgccatg |
417 |
Q |
| |
|
||||| ||||| ||||||||||||| |
|
|
| T |
14905431 |
accatgtgtactttcccttgccatg |
14905455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 201; Significance: 1e-109; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 98 - 490
Target Start/End: Complemental strand, 32716791 - 32716399
Alignment:
| Q |
98 |
tcaaaatttgctcctgatggatataagatccgccctttacctgtcttttttccgtcaacccagtcaccctcatatatctctccatctgaccatgtgtact |
197 |
Q |
| |
|
|||||| |||||||||||||||||| |||||||||||| |||||| ||||||| |||||||| |||||||||||||| ||||| | |||| ||||||| |
|
|
| T |
32716791 |
tcaaaacttgctcctgatggatatatgatccgccctttccctgtcctttttccatcaacccaatcaccctcatatattgttccatttaaccacgtgtact |
32716692 |
T |
|
| Q |
198 |
ttcccttgccatggaaagaaccactcttgaagttaccaatgtagagattcccgttggattgtgtaagggtgccttgaccatgacgggaattcctaaagaa |
297 |
Q |
| |
|
||||||||||||||||| | |||||| ||||||||||| ||||| | ||| | ||||| | |||| ||||| ||||||||||||||||||||||||| |
|
|
| T |
32716691 |
ttcccttgccatggaaaagatcactctcgaagttaccaacgtagatacccccatcggattttttaagagtgccgcgaccatgacgggaattcctaaagaa |
32716592 |
T |
|
| Q |
298 |
ttcaccctcaaaacttgctcctgatggatatatcatccgccctttcccagtcctttctccgtcaacccagtcaccctcatatatctgtccatctgaccat |
397 |
Q |
| |
|
|| |||||||||||||||||||||||||||||| |||||||||||||| ||||||| ||| |||||||| |||||||||||||| ||||| ||||||| |
|
|
| T |
32716591 |
ttgaccctcaaaacttgctcctgatggatatatgatccgccctttccctgtcctttttccatcaacccaatcaccctcatatattgttccatttgaccat |
32716492 |
T |
|
| Q |
398 |
ctgtacattcccttgccatgcttatattttcccttgtaaaaaccgacgtagacattcccatttgaaaaatacttcactttaaacctaggcatt |
490 |
Q |
| |
|
||||| ||||||||||||||||| |||||||||| |||||| | |||||||| ||||||||||||||||||| ||||||||||| ||||| |
|
|
| T |
32716491 |
gtgtactttcccttgccatgcttacgttttcccttgacaaaaccaatgtagacatccccatttgaaaaatacttctctttaaacctacgcatt |
32716399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 92 - 417
Target Start/End: Complemental strand, 32717211 - 32716886
Alignment:
| Q |
92 |
tcaccatcaaaatttgctcctgatggatataagatccgccctttacctgtcttttttccgtcaacccagtcaccctcatatatctctccatctgaccatg |
191 |
Q |
| |
|
||||| |||||| ||| |||||||||||||| |||| | ||||| || ||| || |||| |||||||| |||||||| ||||| |||||||||| ||||| |
|
|
| T |
32717211 |
tcaccctcaaaagttgatcctgatggatatatgatctgacctttcccagtcattcttccatcaacccaatcaccctcgtatatttctccatctggccatg |
32717112 |
T |
|
| Q |
192 |
tgtactttcccttgccatggaaagaaccactcttgaagttaccaatgtagagattcccgttggattgtgtaagggtgccttgaccatgacgggaattcct |
291 |
Q |
| |
|
|||||||||||||||||| |||| | |||||||||||||||||||||||| || ||| |||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
32717111 |
tgtactttcccttgccattgaaaagatcactcttgaagttaccaatgtagacatgcccattggatatggtaagggtgccttgaccatgacgggaattcct |
32717012 |
T |
|
| Q |
292 |
aaagaattcaccctcaaaacttgctcctgatggatatatcatccgccctttcccagtcctttctccgtcaacccagtcaccctcatatatctgtccatct |
391 |
Q |
| |
|
|||||||| |||||||||||||| ||||||| |||||||||| |||||||||| |||||| ||| |||||||| ||||| || ||||| ||||| | |
|
|
| T |
32717011 |
aaagaattgaccctcaaaacttgttcctgatagatatatcatttgccctttccctgtccttcttccatcaacccaatcaccatcgtatattgttccatgt |
32716912 |
T |
|
| Q |
392 |
gaccatctgtacattcccttgccatg |
417 |
Q |
| |
|
|||||| ||||| |||| |||||||| |
|
|
| T |
32716911 |
gaccatgtgtactttcctttgccatg |
32716886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 92 - 416
Target Start/End: Complemental strand, 32717418 - 32717094
Alignment:
| Q |
92 |
tcaccatcaaaatttgctcctgatggatataagatccgccctttacctgtcttttttccgtcaacccagtcaccctcatatatctctccatctgaccatg |
191 |
Q |
| |
|
||||| |||||| |||||||||||||||||| ||||| ||||| |||||| || |||| |||||||| |||||||| ||||| ||||||| |||||| |
|
|
| T |
32717418 |
tcaccctcaaaacttgctcctgatggatatattatccgtcctttccctgtccttcttccatcaacccaatcaccctcgtatattgttccatctaaccatg |
32717319 |
T |
|
| Q |
192 |
tgtactttcccttgccatggaaagaaccactcttgaagttaccaatgtagagattcccgttggattgtgtaagggtgccttgaccatgacgggaattcct |
291 |
Q |
| |
|
|||||||||| ||||||||| || | |||||| ||||||||||||||||| || ||| | |||| | |||||||||| ||||||||||||||||||| |
|
|
| T |
32717318 |
tgtactttcctttgccatggtaaagatcactctcgaagttaccaatgtagatatccccatcagattttttaagggtgccgtgaccatgacgggaattccc |
32717219 |
T |
|
| Q |
292 |
aaagaattcaccctcaaaacttgctcctgatggatatatcatccgccctttcccagtcctttctccgtcaacccagtcaccctcatatatctgtccatct |
391 |
Q |
| |
|
||||||||||||||||| ||| ||||||||||||||| ||| | |||||||||||| || ||| |||||||| |||||||| ||||| | ||||||| |
|
|
| T |
32717218 |
ggagaattcaccctcaaaagttgatcctgatggatatatgatctgacctttcccagtcattcttccatcaacccaatcaccctcgtatatttctccatct |
32717119 |
T |
|
| Q |
392 |
gaccatctgtacattcccttgccat |
416 |
Q |
| |
|
| |||| ||||| |||||||||||| |
|
|
| T |
32717118 |
ggccatgtgtactttcccttgccat |
32717094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 98 - 417
Target Start/End: Complemental strand, 32716998 - 32716679
Alignment:
| Q |
98 |
tcaaaatttgctcctgatggatataagatccgccctttacctgtcttttttccgtcaacccagtcaccctcatatatctctccatctgaccatgtgtact |
197 |
Q |
| |
|
|||||| ||| ||||||| |||||| || ||||||| |||||| || |||| |||||||| ||||| || ||||| ||||| |||||||||||||| |
|
|
| T |
32716998 |
tcaaaacttgttcctgatagatatatcatttgccctttccctgtccttcttccatcaacccaatcaccatcgtatattgttccatgtgaccatgtgtact |
32716899 |
T |
|
| Q |
198 |
ttcccttgccatggaaagaaccactcttgaagttaccaatgtagagattcccgttggattgtgtaagggtgccttgaccatgacgggaattcctaaagaa |
297 |
Q |
| |
|
|||| |||||||||||| | |||||| ||||||||||| ||||| | ||| | ||||| | |||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
32716898 |
ttcctttgccatggaaaagatcactctcgaagttaccaacgtagatacccccatcggattttttaagagtgccgtgaccatgacgggaattcctaaagaa |
32716799 |
T |
|
| Q |
298 |
ttcaccctcaaaacttgctcctgatggatatatcatccgccctttcccagtcctttctccgtcaacccagtcaccctcatatatctgtccatctgaccat |
397 |
Q |
| |
|
|| |||||||||||||||||||||||||||||| |||||||||||||| ||||||| ||| |||||||| |||||||||||||| ||||| | |||| |
|
|
| T |
32716798 |
ttgaccctcaaaacttgctcctgatggatatatgatccgccctttccctgtcctttttccatcaacccaatcaccctcatatattgttccatttaaccac |
32716699 |
T |
|
| Q |
398 |
ctgtacattcccttgccatg |
417 |
Q |
| |
|
||||| ||||||||||||| |
|
|
| T |
32716698 |
gtgtactttcccttgccatg |
32716679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 309 - 490
Target Start/End: Complemental strand, 32714166 - 32713985
Alignment:
| Q |
309 |
aacttgctcctgatggatatatcatccgccctttcccagtcctttctccgtcaacccagtcaccctcatatatctgtccatctgaccatctgtacattcc |
408 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||| ||||||| ||| |||||||| |||||||||||||| ||||| ||||||| ||||| |||| |
|
|
| T |
32714166 |
aacttgctcctgatggatatatgatccgccctttccctgtcctttttccatcaacccaatcaccctcatatattgttccatttgaccatgtgtactttcc |
32714067 |
T |
|
| Q |
409 |
cttgccatgcttatattttcccttgtaaaaaccgacgtagacattcccatttgaaaaatacttcactttaaacctaggcatt |
490 |
Q |
| |
|
||||||||||||| |||||||||| |||||| | |||||||| ||||||||||||||||||| ||||||||||| ||||| |
|
|
| T |
32714066 |
cttgccatgcttacgttttcccttgacaaaaccaatgtagacatccccatttgaaaaatacttctctttaaacctacgcatt |
32713985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 247 - 417
Target Start/End: Complemental strand, 32717470 - 32717300
Alignment:
| Q |
247 |
cccgttggattgtgtaagggtgccttgaccatgacgggaattcctaaagaattcaccctcaaaacttgctcctgatggatatatcatccgccctttccca |
346 |
Q |
| |
|
|||||| |||| |||| | || || ||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |||||||| |
|
|
| T |
32717470 |
cccgtttgattttgtatgagttccgtgaccatgaaaggaattcctagagaattcaccctcaaaacttgctcctgatggatatattatccgtcctttccct |
32717371 |
T |
|
| Q |
347 |
gtcctttctccgtcaacccagtcaccctcatatatctgtccatctgaccatctgtacattcccttgccatg |
417 |
Q |
| |
|
|||||| ||| |||||||| |||||||| ||||| ||||||| ||||| ||||| |||| |||||||| |
|
|
| T |
32717370 |
gtccttcttccatcaacccaatcaccctcgtatattgttccatctaaccatgtgtactttcctttgccatg |
32717300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 105 - 210
Target Start/End: Complemental strand, 32714163 - 32714058
Alignment:
| Q |
105 |
ttgctcctgatggatataagatccgccctttacctgtcttttttccgtcaacccagtcaccctcatatatctctccatctgaccatgtgtactttccctt |
204 |
Q |
| |
|
|||||||||||||||||| |||||||||||| |||||| ||||||| |||||||| |||||||||||||| ||||| ||||||||||||||||||||| |
|
|
| T |
32714163 |
ttgctcctgatggatatatgatccgccctttccctgtcctttttccatcaacccaatcaccctcatatattgttccatttgaccatgtgtactttccctt |
32714064 |
T |
|
| Q |
205 |
gccatg |
210 |
Q |
| |
|
|||||| |
|
|
| T |
32714063 |
gccatg |
32714058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 104; Significance: 1e-51; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 114 - 417
Target Start/End: Complemental strand, 2998079 - 2997776
Alignment:
| Q |
114 |
atggatataagatccgccctttacctgtcttttttccgtcaacccagtcaccctcatatatctctccatctgaccatgtgtactttcccttgccatggaa |
213 |
Q |
| |
|
||||||||| || || ||||| |||||| | |||| |||||||| |||||||||||||| |||| |||||||||||||||||||||||||||||| |
|
|
| T |
2998079 |
atggatatattattcgtcctttccctgtccgtcttccatcaacccaatcaccctcatatattgttccacttgaccatgtgtactttcccttgccatggaa |
2997980 |
T |
|
| Q |
214 |
agaaccactcttgaagttaccaatgtagagattcccgttggattgtgtaagggtgccttgaccatgacgggaattcctaaagaattcaccctcaaaactt |
313 |
Q |
| |
|
| | || | | |||||||||||| ||| || ||| ||||||| |||||| ||||| ||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
2997979 |
aagatcattttcaaagttaccaatgaagacatccccattggattttgtaagagtgccatgaccatgacgagaattcctaaagaattcaccctcaaaactt |
2997880 |
T |
|
| Q |
314 |
gctcctgatggatatatcatccgccctttcccagtcctttctccgtcaacccagtcaccctcatatatctgtccatctgaccatctgtacattcccttgc |
413 |
Q |
| |
|
|||| ||| |||| ||| | | | |||||||||||||||| | | | |||||| ||||||||||| || |||| ||||||| ||||| ||||||||| |
|
|
| T |
2997879 |
gctcttgacggatttatgaccggtcctttcccagtccttttttcattaacccaatcaccctcatagattgttccacttgaccatgtgtactttcccttgc |
2997780 |
T |
|
| Q |
414 |
catg |
417 |
Q |
| |
|
|||| |
|
|
| T |
2997779 |
catg |
2997776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 13 - 410
Target Start/End: Complemental strand, 2998593 - 2998196
Alignment:
| Q |
13 |
attctcgaagttaccaacatagacatccccattggaatgtgtaaaggtgccgtgaccatgaccaatatcattctcccagtcaccatcaaaatttgctcct |
112 |
Q |
| |
|
|||||||||||||||||| |||| |||||||||||| | ||||| ||||||| ||||||||| | || | ||||| |||||| ||| |||| |
|
|
| T |
2998593 |
attctcgaagttaccaacgtagatatccccattggattttgtaagggtgccgcgaccatgacgggagttcttggagaattcaccctcaaaaattgatcct |
2998494 |
T |
|
| Q |
113 |
gatggatataagatccgccctttacctgtcttttttccgtcaacccagtcaccctcatatatctctccatctgaccatgtgtactttcccttgccatgga |
212 |
Q |
| |
|
|||| ||||| |||||| ||||| |||||| || |||| |||| ||| |||||| ||||| ||||| |||||| |||||||||| |||||||||| |
|
|
| T |
2998493 |
gatgaatatatgatccgacctttccctgtccttcttccatcaaaccaaccacccttgtatattgttccatttgaccacatgtactttccgttgccatgga |
2998394 |
T |
|
| Q |
213 |
aagaaccactcttgaagttaccaatgtagagattcccgttggattgtgtaagggtgccttgaccatgacgggaattcctaaagaattcaccctcaaaact |
312 |
Q |
| |
|
|| | | | | ||||||||||| ||||| || ||| | ||||| ||| |||||| | |||| ||||||||||||| | ||||||||||||||||||| |
|
|
| T |
2998393 |
aaagatcgttatcgaagttaccaacgtagatatccccatcggattttgtcagggtgtcgtgactatgacgggaattcatggagaattcaccctcaaaact |
2998294 |
T |
|
| Q |
313 |
tgctcctgatggatatatcatccgccctttcccagtcctttctccgtcaacccagtcaccctcatatatctgtccatctgaccatctgtacattccct |
410 |
Q |
| |
|
|| ||||||||||||||| ||||| |||||||| ||||||| | | |||||||| |||||||||||||| ||||| ||||||| ||| | |||||| |
|
|
| T |
2998293 |
tgttcctgatggatatatgatccgtcctttccctgtcctttgttcatcaacccaatcaccctcatatattgttccatttgaccatgtgtgctttccct |
2998196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 92 - 417
Target Start/End: Complemental strand, 2998307 - 2997983
Alignment:
| Q |
92 |
tcaccatcaaaatttgctcctgatggatataagatccgccctttacctgtcttttttccgtcaacccagtcaccctcatatatctctccatctgaccatg |
191 |
Q |
| |
|
||||| |||||| ||| |||||||||||||| |||||| ||||| |||||| ||| | | |||||||| |||||||||||||| ||||| |||||||| |
|
|
| T |
2998307 |
tcaccctcaaaacttgttcctgatggatatatgatccgtcctttccctgtcctttgttcatcaacccaatcaccctcatatattgttccatttgaccatg |
2998208 |
T |
|
| Q |
192 |
tgtactttcccttgccatggaaagaaccactcttgaagttaccaatgtagagattcccgttggattgtgtaagggtgccttgaccatgacgggaattcct |
291 |
Q |
| |
|
||| |||||||| |||||||||| | ||| |||||||||||||||| || ||| | |||| | |||||||||| | ||||| ||||||||| || |
|
|
| T |
2998207 |
tgtgctttccct-gccatggaaaatattgttctcaaagttaccaatgtagatatccccatcagattttttaagggtgccgtaaccattacgggaatttct |
2998109 |
T |
|
| Q |
292 |
aaagaattcaccctcaaaacttgctcctgatggatatatcatccgccctttcccagtcctttctccgtcaacccagtcaccctcatatatctgtccatct |
391 |
Q |
| |
|
||||||||||||||||| ||| | | |||||||||| || || |||||||| |||| | ||| |||||||| |||||||||||||| |||| | |
|
|
| T |
2998108 |
cgagaattcaccctcaaaaattgttttttatggatatattattcgtcctttccctgtccgtcttccatcaacccaatcaccctcatatattgttccactt |
2998009 |
T |
|
| Q |
392 |
gaccatctgtacattcccttgccatg |
417 |
Q |
| |
|
|||||| ||||| ||||||||||||| |
|
|
| T |
2998008 |
gaccatgtgtactttcccttgccatg |
2997983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 188 - 417
Target Start/End: Complemental strand, 2998625 - 2998396
Alignment:
| Q |
188 |
catgtgtactttcccttgccatggaaagaaccactcttgaagttaccaatgtagagattcccgttggattgtgtaagggtgccttgaccatgacgggaat |
287 |
Q |
| |
|
||||||||||||||||||||||| ||| | || ||| ||||||||||| ||||| || ||| ||||||| |||||||||||| ||||||||||||| | |
|
|
| T |
2998625 |
catgtgtactttcccttgccatgaaaaatatcattctcgaagttaccaacgtagatatccccattggattttgtaagggtgccgcgaccatgacgggagt |
2998526 |
T |
|
| Q |
288 |
tcctaaagaattcaccctcaaaacttgctcctgatggatatatcatccgccctttcccagtcctttctccgtcaacccagtcaccctcatatatctgtcc |
387 |
Q |
| |
|
|| | ||||||||||||||||| ||| |||||||| |||||| ||||| |||||||| |||||| ||| |||| ||| |||||| ||||| ||| |
|
|
| T |
2998525 |
tcttggagaattcaccctcaaaaattgatcctgatgaatatatgatccgacctttccctgtccttcttccatcaaaccaaccacccttgtatattgttcc |
2998426 |
T |
|
| Q |
388 |
atctgaccatctgtacattcccttgccatg |
417 |
Q |
| |
|
|| |||||| ||||| |||| |||||||| |
|
|
| T |
2998425 |
atttgaccacatgtactttccgttgccatg |
2998396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 92 - 210
Target Start/End: Complemental strand, 2997894 - 2997776
Alignment:
| Q |
92 |
tcaccatcaaaatttgctcctgatggatataagatccgccctttacctgtcttttttccgtcaacccagtcaccctcatatatctctccatctgaccatg |
191 |
Q |
| |
|
||||| |||||| |||||| ||| |||| || || | | ||||| || ||| ||||| | | |||||| ||||||||||| || |||| |||||||| |
|
|
| T |
2997894 |
tcaccctcaaaacttgctcttgacggatttatgaccggtcctttcccagtccttttttcattaacccaatcaccctcatagattgttccacttgaccatg |
2997795 |
T |
|
| Q |
192 |
tgtactttcccttgccatg |
210 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
2997794 |
tgtactttcccttgccatg |
2997776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 132 - 252
Target Start/End: Original strand, 34534099 - 34534219
Alignment:
| Q |
132 |
ctttacctgtcttttttccgtcaacccagtcaccctcatatatctctccatctgaccatgtgtactttcccttgccatggaaagaaccactcttgaagtt |
231 |
Q |
| |
|
|||| |||||| ||| ||| |||||||| || ||||||||||| ||||||||||||||||||||| || |||||||| || ||| ||||||||| |
|
|
| T |
34534099 |
ctttccctgtcatttgtccatcaacccaatcgccctcatatattgttccatctgaccatgtgtacttcccgttgccatgacaaagttcacccttgaagtt |
34534198 |
T |
|
| Q |
232 |
accaatgtagagattcccgtt |
252 |
Q |
| |
|
||||||||||| || |||||| |
|
|
| T |
34534199 |
accaatgtagacatccccgtt |
34534219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 130 - 242
Target Start/End: Original strand, 34916660 - 34916772
Alignment:
| Q |
130 |
ccctttacctgtcttttttccgtcaacccagtcaccctcatatatctctccatctgaccatgtgtactttcccttgccatggaaagaaccactcttgaag |
229 |
Q |
| |
|
|||||| |||||| |||||| ||||||||||||||||| ||||| ||||| || |||||||||||||||| ||||||||| | ||| |||||| |
|
|
| T |
34916660 |
ccctttccctgtcacttttccatcaacccagtcaccctcgtatattgttccatttgtccatgtgtactttcccatgccatggagaagttcacccttgaat |
34916759 |
T |
|
| Q |
230 |
ttaccaatgtaga |
242 |
Q |
| |
|
||||||||||||| |
|
|
| T |
34916760 |
ttaccaatgtaga |
34916772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 130 - 210
Target Start/End: Original strand, 34544940 - 34545020
Alignment:
| Q |
130 |
ccctttacctgtcttttttccgtcaacccagtcaccctcatatatctctccatctgaccatgtgtactttcccttgccatg |
210 |
Q |
| |
|
|||||| |||||| ||||||| ||||||||||||||||| ||||| ||||| || ||||||||||||||| ||||||| |
|
|
| T |
34544940 |
ccctttccctgtcatttttccatcaacccagtcaccctcgtatattgttccatttgtccatgtgtactttccgatgccatg |
34545020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 131 - 210
Target Start/End: Complemental strand, 39848110 - 39848031
Alignment:
| Q |
131 |
cctttacctgtcttttttccgtcaacccagtcaccctcatatatctctccatctgaccatgtgtactttcccttgccatg |
210 |
Q |
| |
|
||||| |||||||| | ||| |||||||| |||||| ||||||| ||||||||||||||||||||||| |||||||| |
|
|
| T |
39848110 |
cctttccctgtcttatctccatcaacccaatcacccacatatattgatccatctgaccatgtgtactttcttttgccatg |
39848031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 161 - 209
Target Start/End: Complemental strand, 44474183 - 44474135
Alignment:
| Q |
161 |
tcaccctcatatatctctccatctgaccatgtgtactttcccttgccat |
209 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||| ||||||| |
|
|
| T |
44474183 |
tcaccctcatatattgatccatctgaccatgtgtactttccgttgccat |
44474135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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