View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0733_low_19 (Length: 512)
Name: NF0733_low_19
Description: NF0733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0733_low_19 |
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Alignment Details
Target: chr7 (Bit Score: 176; Significance: 1e-94; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 225 - 423
Target Start/End: Original strand, 41414654 - 41414850
Alignment:
| Q |
225 |
ggaaaagtttatccaaactagaggtccatgtcttgtttatttatctgcactgtgataatttgtggtctgtatgtacaaatgttgtctagatatatacatc |
324 |
Q |
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| T |
41414654 |
ggaaaagtttatccaaactag--gtctatgtcttgtttatttatctgcagtgtgataatttgtggtctgtatgtacaaatgttgtctagatatatacatc |
41414751 |
T |
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| Q |
325 |
tacagactgcagggaggtagtgagtttcgatttttgtggcgattgctaccgaaccagctccaaacattctggctgatttaatcaacatctctattcaca |
423 |
Q |
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| T |
41414752 |
tacagactgcagggaggtaatgagtttcgatttttgtggcgattgctaccgaaccagctccaaacattctggctgatttaatcaacatctctattcaca |
41414850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 2 - 187
Target Start/End: Original strand, 41414437 - 41414622
Alignment:
| Q |
2 |
caatcagtcaaaataataaggtgaaaatgatggctacgtaataaggtgaaaagggaagccataaatannnnnnngatgcttgttacaagtttatagatat |
101 |
Q |
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| T |
41414437 |
caatcagtcaaaataataaggtgaaaatgatggctacgtaataaggtgaaaagggaagccataaatatttttttgatgcttgttacaagtttatagatat |
41414536 |
T |
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| Q |
102 |
ttgtgtagaagttaaacgagacagattttgacaaaattgagatgcataagctcatttcaattattacaataagtttatccaattcc |
187 |
Q |
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| T |
41414537 |
ttgtgtagaagttaaacgagacagattttgacaaaattgagatgcataagctaatttcaattattacaataagtttatccaattcc |
41414622 |
T |
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