View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0733_low_2 (Length: 737)

Name: NF0733_low_2
Description: NF0733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0733_low_2
NF0733_low_2
[»] chr7 (1 HSPs)
chr7 (13-597)||(40930806-40931390)
[»] chr6 (2 HSPs)
chr6 (208-594)||(33808134-33808514)
chr6 (595-648)||(33808542-33808595)
[»] chr5 (1 HSPs)
chr5 (22-125)||(8278775-8278877)


Alignment Details
Target: chr7 (Bit Score: 496; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 496; E-Value: 0
Query Start/End: Original strand, 13 - 597
Target Start/End: Complemental strand, 40931390 - 40930806
Alignment:
Q  13 aatatcaagtatcaactactttttcctaaataatgaatatggaaacgataatttacaggagatggaaagtggcaaaatttatacctctccaaattgtcgt 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||    
T  40931390 aatatcaagtatcaactactttttcctaaataatgaatatggaaacgataatttactggagatggaaagtggcaaaatttttacctctccaaattgtcgt 40931291  T
Q  113 tctatccttcccacgacatttaaaaaatggannnnnnngagaacttagtttccgttttctctcgccgccgtaaatgacatcgaatcactgcaccaccgtc 212  Q
    |||||||||||||||||||||||||||||||       |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||    
T  40931290 tctatccttcccacgacatttaaaaaatggatttttttgagaacttagtttccgttttatcttgccgccgtaaatgacatcgaatcactgcaccaccgtc 40931191  T
Q  213 tcagtcctttctcgacgaaatcgttacttcacgttgacattgacaaggctttcgccacttacgtcatataaagttttcacctttcaaccttgtaaacgtc 312  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||| ||| |||||||||||||||| ||||||||||||    
T  40931190 tcagtcctttctctacgaaatcgttacttcacgttgacattgacaaggctttcgccgcttccgtcacatatagttttcacctttcaaacttgtaaacgtc 40931091  T
Q  313 ctccgcgaagccgacgccaatcaagacggtggtagcgcgataattcatggtttcatctctaaatcaattgaatttctgtttggatctagattggattagt 412  Q
    |||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||    
T  40931090 ctccgcgaagccgacgccgatcaaaacggtggtagcgcgataattcatggtttcatctctaaatcaattgaatttctgtttggatctagattcgatcagt 40930991  T
Q  413 tgttgtagcagtttcaacaatatgttttcgccgctgttttgaagtttctgtttggatctagatttaatcagttgctggagcagtttttgtaagcggagat 512  Q
    ||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40930990 tgttgtagcagtttctacaatatgttatcgccgctgttttgaagtttctgtttggatctagatttaatcagttgctggagcagtttttgtaagcggagat 40930891  T
Q  513 gaacaacttcttaaccgctggagaatgcgccggcgtaaaaaacaccttaagcttgaacggaagatggtggttttcgccggaggtg 597  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40930890 gaacagcttcttaaccgctggagaatgcgccggcgtaaaaaacaccttaagcttgaacggaagatggtggttttcgccggaggtg 40930806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 300; Significance: 1e-168; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 208 - 594
Target Start/End: Original strand, 33808134 - 33808514
Alignment:
Q  208 ccgtctcagtcctttctcgacgaaatcgttacttcacgttgacattgacaaggctttcgccacttacgtcatataaagttttcacctttcaaccttgtaa 307  Q
    ||||||||||||||||||||||||||||||||||||||||||      ||||||||||||| ||  ||||| |||||||||  |||||||||||||||||    
T  33808134 ccgtctcagtcctttctcgacgaaatcgttacttcacgttga------caaggctttcgccgctgccgtcacataaagtttcaacctttcaaccttgtaa 33808227  T
Q  308 acgtcctccgcgaagccgacgccaatcaagacggtggtagcgcgataattcatggtttcatctctaaatcaattgaatttctgtttggatctagattgga 407  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  33808228 acgtcctccgcgaagccgacgccgatcaagacggtggtagcgcgataattcatggtttcatctctaaatcaattgaatttctgtttggatctagattcga 33808327  T
Q  408 ttagttgttgtagcagtttcaacaatatgttttcgccgctgttttgaagtttctgtttggatctagatttaatcagttgctggagcagtttttgtaagcg 507  Q
    | |||||||||||||||||| |||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33808328 tcagttgttgtagcagtttctacaatatgttatcgccactgttttgaagattctgtttggatctagatttaatcagttgctggagcagtttttgtaagcg 33808427  T
Q  508 gagatgaacaacttcttaaccgctggagaatgcgccggcgtaaaaaacaccttaagcttgaacggaagatggtggttttcgccggag 594  Q
    ||||||||  |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33808428 gagatgaatgacttcttaacggctggagaatgcgccggcgtaaaaaacaccttaagcttgaacggaagatggtggttttcgccggag 33808514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 595 - 648
Target Start/End: Original strand, 33808542 - 33808595
Alignment:
Q  595 gtgcaggttaagaagtagcaatacaatttacgatttgtaaagagatggtgattt 648  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33808542 gtgcaggttaagaagtagcaatacaatttacgatttgtaaagagatggtgattt 33808595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 8e-23; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 22 - 125
Target Start/End: Original strand, 8278775 - 8278877
Alignment:
Q  22 tatcaactactttttcctaaataatgaatatggaaacgataatttacaggagatggaaagtggcaaaatttatacctctccaaattgtcgttctatcctt 121  Q
    |||||||||| |||||||||||||||| ||| |||| || | ||||  ||||||||||||||||||||||| ||||||||||||||||| |||| |||||    
T  8278775 tatcaactacattttcctaaataatgattattgaaatgaca-tttattggagatggaaagtggcaaaatttctacctctccaaattgtcattctgtcctt 8278873  T
Q  122 ccca 125  Q
    ||||    
T  8278874 ccca 8278877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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