View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0733_low_23 (Length: 510)

Name: NF0733_low_23
Description: NF0733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0733_low_23
NF0733_low_23
[»] chr7 (4 HSPs)
chr7 (27-336)||(48495571-48495876)
chr7 (336-482)||(48495905-48496051)
chr7 (170-243)||(39093252-39093324)
chr7 (161-220)||(28562076-28562135)
[»] chr4 (2 HSPs)
chr4 (153-225)||(43471219-43471291)
chr4 (155-195)||(38346742-38346782)
[»] chr1 (1 HSPs)
chr1 (156-198)||(51781614-51781656)
[»] chr8 (1 HSPs)
chr8 (148-209)||(29495322-29495382)
[»] chr2 (1 HSPs)
chr2 (172-216)||(39549220-39549264)


Alignment Details
Target: chr7 (Bit Score: 273; Significance: 1e-152; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 27 - 336
Target Start/End: Original strand, 48495571 - 48495876
Alignment:
Q  27 cagccaaggagtggagcaagcaagcaacttgaaactaaccatatttcatgttgattgatagacctgttcttgacttgaattagatttgatttaaaactta 126  Q
    ||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  48495571 cagccaaggagtggagca----agcaacttgaaactaaccatatttcatgttgattgatagaactgttcttgacttgaattagatttgatttaaaactta 48495666  T
Q  127 acttaattaggactacatcaaatttgaaatttaaaattaggactaaattcaattatttgattaggtaaagaaggatagaattgtaaattaaagagtttag 226  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48495667 acttaattaggactacatcaaatttcaaatttaaaattaggactaaattcaattatttgattaggtaaagaaggatagaattgtaaattaaagagtttag 48495766  T
Q  227 atgatggcaaaacttttgtatctgggtatagattcccactgaagtaacagtatttagaagctaaaatgcaaattctataacaagtccagcttagataatc 326  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||    
T  48495767 atgatggcagaacttttgtatctgggtatagattcccactgaagtaacagtatttagaagctaaaatgctaattctataacaagtccagctgagataatc 48495866  T
Q  327 tgaatatgtg 336  Q
    ||||||||||    
T  48495867 tgaatatgtg 48495876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 336 - 482
Target Start/End: Original strand, 48495905 - 48496051
Alignment:
Q  336 gcaacccacttgctcttgttcctttttcttgcatgatgatgtctcttatgatcagtttcatcattcttgctaatcatagttacttccataccttttccta 435  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48495905 gcaacccacttgctcttgttcctttttcttgcatgatgatgtctcttatgatcagtttcatcattcttgctaatcatagttacttccataccttttccta 48496004  T
Q  436 tagaatgtttcacagatcttactgctagtttctcatcttttctcctt 482  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  48496005 tagaatgtttcacagatcttactgctagtttctcatcttttctcctt 48496051  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 170 - 243
Target Start/End: Original strand, 39093252 - 39093324
Alignment:
Q  170 taaattcaattatttgattaggtaaagaaggatagaattgtaaattaaagagtttagatgatggcaaaactttt 243  Q
    ||||||||||||||||||| |||||| || |||| |||||||||| |||||||||| |||| ||| ||| ||||    
T  39093252 taaattcaattatttgatttggtaaa-aatgataaaattgtaaataaaagagtttaaatgaaggctaaaatttt 39093324  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 161 - 220
Target Start/End: Complemental strand, 28562135 - 28562076
Alignment:
Q  161 aattaggactaaattcaattatttgattaggtaaagaaggatagaattgtaaattaaaga 220  Q
    |||||||| | ||||||||||||| ||||||||||||||| || | |||||||| |||||    
T  28562135 aattaggattgaattcaattatttaattaggtaaagaagggtaaatttgtaaataaaaga 28562076  T

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Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 153 - 225
Target Start/End: Complemental strand, 43471291 - 43471219
Alignment:
Q  153 aaatttaaaattaggactaaattcaattatttgattaggtaaagaaggatagaattgtaaattaaagagttta 225  Q
    ||||||||||||| || ||||||||| ||||||||||| |||||||| |||||||||||||| || |||||||    
T  43471291 aaatttaaaattatgattaaattcaaatatttgattagataaagaagtatagaattgtaaataaatgagttta 43471219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 155 - 195
Target Start/End: Complemental strand, 38346782 - 38346742
Alignment:
Q  155 atttaaaattaggactaaattcaattatttgattaggtaaa 195  Q
    ||||||| |||||| ||||||||||||||||||||| ||||    
T  38346782 atttaaagttaggattaaattcaattatttgattagataaa 38346742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 156 - 198
Target Start/End: Complemental strand, 51781656 - 51781614
Alignment:
Q  156 tttaaaattaggactaaattcaattatttgattaggtaaagaa 198  Q
    ||||||||||||| |||||||||||||||||||| ||||||||    
T  51781656 tttaaaattaggaataaattcaattatttgattaagtaaagaa 51781614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 148 - 209
Target Start/End: Complemental strand, 29495382 - 29495322
Alignment:
Q  148 atttgaaatttaaaattaggactaaattcaattatttgattaggtaaagaaggatagaattg 209  Q
    |||||||||||||| ||||||  |||||||||||||| ||||||||||||| |||| |||||    
T  29495382 atttgaaatttaaa-ttaggataaaattcaattatttaattaggtaaagaatgataaaattg 29495322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 172 - 216
Target Start/End: Original strand, 39549220 - 39549264
Alignment:
Q  172 aattcaattatttgattaggtaaagaaggatagaattgtaaatta 216  Q
    ||||||||||||||||||| ||||| | |||| ||||||||||||    
T  39549220 aattcaattatttgattagataaagcatgataaaattgtaaatta 39549264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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