View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0733_low_27 (Length: 459)
Name: NF0733_low_27
Description: NF0733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0733_low_27 |
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Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-122; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 187 - 430
Target Start/End: Original strand, 33173182 - 33173425
Alignment:
| Q |
187 |
gcttacaacaagagttcaaatcacatttccaattttcaacaaagcatcaaactgaatannnnnnnaactgtatcaaaccgaatcactaatatctacaata |
286 |
Q |
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| T |
33173182 |
gcttacaacaagagttcaaatcacatttccaattttcaacaaagcatcaaactgaatatttttttaactgtatcaaaccgaatcactaatatctacaata |
33173281 |
T |
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| Q |
287 |
ttcatcaaacttatttaacactaaaaacatcacgagctagcctttgaaacccatcaaactgaatcatccatcaatcactacaaaattcatcatgacttgc |
386 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33173282 |
ttcatcaaacttatttaacactaaaaacatcacgagctagcctttgaaacccatcaaactgaatcatccatcaatcactacaaaattcatcatgacttgc |
33173381 |
T |
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| Q |
387 |
accaaactgcatccctcctcaataaacaatctcactgattattc |
430 |
Q |
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| T |
33173382 |
accaaactgcatccctcctcaataaacaatctcactgattattc |
33173425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 9 - 176
Target Start/End: Original strand, 33172988 - 33173157
Alignment:
| Q |
9 |
caacaatatccacactttgcttcataattaaaattgaaagagttcgatttgttttgcgtcaagaaaagctaatcgta--gtgctcatatatttttgccca |
106 |
Q |
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| T |
33172988 |
caacaaaatccacactttgcttcataattaaaattgaaaaagttcgatttattttgcgtcgagaaaagctaatcgtatagtgctcatatgtttttgccca |
33173087 |
T |
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| Q |
107 |
atgtggcactcaacaccttatttgaagcctgttgtaatatatgacgatggtgttgttaaattagcttctt |
176 |
Q |
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| T |
33173088 |
atgtggcactcaacaccttatttgcagcctgttgtaatatatgacgatggtgttgttaaattagcttctt |
33173157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 378 - 421
Target Start/End: Original strand, 33153189 - 33153232
Alignment:
| Q |
378 |
atgacttgcaccaaactgcatccctcctcaataaacaatctcac |
421 |
Q |
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| T |
33153189 |
atgacttgctccaaactgcatccctcctcaataaacattctcac |
33153232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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