View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0733_low_3 (Length: 694)

Name: NF0733_low_3
Description: NF0733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0733_low_3
NF0733_low_3
[»] chr8 (23 HSPs)
chr8 (143-656)||(6275386-6275899)
chr8 (402-670)||(6322506-6322774)
chr8 (406-666)||(6333077-6333337)
chr8 (404-651)||(7460563-7460810)
chr8 (404-656)||(6425181-6425433)
chr8 (402-651)||(6364362-6364611)
chr8 (376-657)||(6290371-6290652)
chr8 (509-658)||(6371300-6371449)
chr8 (143-286)||(6322253-6322396)
chr8 (503-651)||(6353590-6353738)
chr8 (143-266)||(6332837-6332960)
chr8 (511-647)||(6392094-6392230)
chr8 (509-639)||(6264927-6265057)
chr8 (146-240)||(6353232-6353326)
chr8 (143-284)||(6364025-6364168)
chr8 (149-273)||(6424909-6425033)
chr8 (152-273)||(6289818-6289939)
chr8 (169-273)||(7460153-7460257)
chr8 (169-234)||(7471729-7471794)
chr8 (511-647)||(6411258-6411394)
chr8 (512-642)||(6458262-6458392)
chr8 (518-642)||(6452175-6452299)
chr8 (188-241)||(6451892-6451945)
[»] chr5 (1 HSPs)
chr5 (572-650)||(9603035-9603113)
[»] chr2 (3 HSPs)
chr2 (518-647)||(42694397-42694526)
chr2 (518-642)||(42687136-42687260)
chr2 (156-273)||(42694042-42694159)


Alignment Details
Target: chr8 (Bit Score: 414; Significance: 0; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 143 - 656
Target Start/End: Original strand, 6275386 - 6275899
Alignment:
Q  143 taattgaggtatgacattttgagatactgatttgagtatgtaaacaagaaaatctgaagacttcaagtgaccaaatgattcatctcttggaagataaata 242  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6275386 taattgaggtatgacattttgagatactgatttgagtatgtaaacaagaaaatctgaagacttcaagtgaccaaatgattcatctcttggaagataaata 6275485  T
Q  243 tactcgctccgtctctcacttttaggatctgcacaaatacaaaaatagcaaaatatgcattagcaagaggaatgtcttagaatcataaacaaatgaaaat 342  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6275486 tactcgctccgtctctcacttttaggatctgcacaaatacaaaaatagcaaaatatgcattagcaagaggaatgtcttagaatcataaacaaatgaaaat 6275585  T
Q  343 ttggatcaacatacttaagatataacatacataaagtgtttaaatagaatataaaagcatataacctttcttagctggttttctgccggttctccccctt 442  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| |||    
T  6275586 ttggatcaacatacttaagatataacatacataaagtgtttaaataaaatataaaagcatataacctttcttagctggtttcctgccggttctccctctt 6275685  T
Q  443 agagggtaaggcaaggtgttggatcctccaataacgggacgagccaaccttgcgtacttatcaggatcacccaagtcattgtaaacatcatagtcataga 542  Q
     |||||||||||||||||||||||||||||||||||||||||||||| ||||| | ||| |||||||||||||  |||||||| ||||| ||||||||||    
T  6275686 cgagggtaaggcaaggtgttggatcctccaataacgggacgagccaagcttgctttcttgtcaggatcacccacatcattgtagacatcgtagtcataga 6275785  T
Q  543 tcctatcatgttccttgcgctgacccgttccatctcctcttaaagtcttcaattcttcttgtctatagtagactaatggagctggtgtttcacttggaag 642  Q
    |||| ||   ||| || ||||  || |||||||||||||||||||| ||||| |||||||||||||||||||||||||||| ||||||||||||||||||    
T  6275786 tcctttcccattctttacgctctcctgttccatctcctcttaaagtgttcaactcttcttgtctatagtagactaatggaggtggtgtttcacttggaag 6275885  T
Q  643 gtatgtctatattt 656  Q
     |||||||||||||    
T  6275886 atatgtctatattt 6275899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 402 - 670
Target Start/End: Original strand, 6322506 - 6322774
Alignment:
Q  402 tataacctttcttagctggttttctgccggttctcccccttagagggtaaggcaaggtgttggatcctccaataacgggacgagccaaccttgcgtactt 501  Q
    |||||||||| ||||||||||| ||||||||||| |||||| |||||||||||||||||| |||||||||||||||||||||||||||   |||||||||    
T  6322506 tataaccttttttagctggtttcctgccggttctgccccttcgagggtaaggcaaggtgtcggatcctccaataacgggacgagccaagtgtgcgtactt 6322605  T
Q  502 atcaggatcacccaagtcattgtaaacatcatagtcatagatcctatcatgttccttgcgctgacccgttccatctcctcttaaagtcttcaattcttct 601  Q
     ||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6322606 gtcaggatcacccaagtcattgtaaacatcgtagtcatagattctatcgtgttccttgcgctgacccgttccatctcctcttaaagtcttcaattcttct 6322705  T
Q  602 tgtctatagtagactaatggagctggtgtttcacttggaaggtatgtctatatttttatatatttgatg 670  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  6322706 tctctatagtagactaatggagctggtgtttcacttggaaggtatgtctatatttttatttatttgatg 6322774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 165; E-Value: 7e-88
Query Start/End: Original strand, 406 - 666
Target Start/End: Original strand, 6333077 - 6333337
Alignment:
Q  406 acctttcttagctggttttctgccggttctcccccttagagggtaaggcaaggtgttggatcctccaataacgggacgagccaaccttgcgtacttatca 505  Q
    |||||| |||||  |||| |||||||||||||||||| |||||||||||||| | ||||||||||||| ||||||||||||||| ||| | | ||| |||    
T  6333077 accttttttagcatgtttcctgccggttctcccccttcgagggtaaggcaagttattggatcctccaacaacgggacgagccaagctttctttcttgtca 6333176  T
Q  506 ggatcacccaagtcattgtaaacatcatagtcatagatcctatcatgttccttgcgctgacccgttccatctcctcttaaagtcttcaattcttcttgtc 605  Q
    |||||||||||||||||||||||||| |||||||||||||||||   ||| ||||||| |||||||||||||||||||||||||||||||||||||||||    
T  6333177 ggatcacccaagtcattgtaaacatcgtagtcatagatcctatccgattctttgcgctcacccgttccatctcctcttaaagtcttcaattcttcttgtc 6333276  T
Q  606 tatagtagactaatggagctggtgtttcacttggaaggtatgtctatatttttatatattt 666  Q
    | |||||||||||||||||||||||||| ||||||||||| |||||||||| ||| |||||    
T  6333277 tgtagtagactaatggagctggtgtttcgcttggaaggtacgtctatatttatatttattt 6333337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 404 - 651
Target Start/End: Original strand, 7460563 - 7460810
Alignment:
Q  404 taacctttcttagctggttttctgccggttctcccccttagagggtaaggcaaggtgttggatcctccaataacgggacgagccaaccttgcgtacttat 503  Q
    |||||||| |||| |||||||||||||||||| |||||| |||||||||||||| |    | |||||||  ||| ||||||||||| || || | ||  |    
T  7460563 taaccttttttagatggttttctgccggttcttccccttcgagggtaaggcaagtttccaggtcctccagcaacaggacgagccaagctagctttctggt 7460662  T
Q  504 caggatcacccaagtcattgtaaacatcatagtcatagatcctatcatgttccttgcgctgacccgttccatctcctcttaaagtcttcaattcttcttg 603  Q
    | |||||||||||||||||||| |||||||| ||||| || || ||   |||||||||||  ||||||||||||||||||||||||||||||||||||||    
T  7460663 cgggatcacccaagtcattgtagacatcataatcatatattctgtcccattccttgcgctctcccgttccatctcctcttaaagtcttcaattcttcttg 7460762  T
Q  604 tctatagtagactaatggagctggtgtttcacttggaaggtatgtcta 651  Q
    ||| ||||| |||||||||||||||||| |||||||||||||||||||    
T  7460763 tctgtagtacactaatggagctggtgttgcacttggaaggtatgtcta 7460810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 404 - 656
Target Start/End: Original strand, 6425181 - 6425433
Alignment:
Q  404 taacctttcttagctggttttctgccggttctcccccttagagggtaaggcaaggtgttggatcctccaataacgggacgagccaaccttgcgtacttat 503  Q
    |||||||| ||||||||||||||||| |||||||||||| ||||||||||||||||| | |||||||||| ||| |||||| ||||  | |  | |   |    
T  6425181 taaccttttttagctggttttctgcctgttctcccccttcgagggtaaggcaaggtgctcgatcctccaagaactggacgacccaaggtaggtttcgagt 6425280  T
Q  504 caggatcacccaagtcattgtaaacatcatagtcatagatcctatcatgttccttgcgctgacccgttccatctcctcttaaagtcttcaattcttcttg 603  Q
    |||| |||||||| |||||||| ||||| || ||||||||||| ||   |||||||||||  ||  ||||||||||||||||||||||||| ||||||||    
T  6425281 caggctcacccaaatcattgtagacatcgtaatcatagatcctttcccattccttgcgctctccttttccatctcctcttaaagtcttcaactcttcttg 6425380  T
Q  604 tctatagtagactaatggagctggtgtttcacttggaaggtatgtctatattt 656  Q
    ||||||||| || |||||||| |||||||||||||||||||||||||| ||||    
T  6425381 tctatagtacaccaatggagccggtgtttcacttggaaggtatgtctacattt 6425433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 110; E-Value: 5e-55
Query Start/End: Original strand, 402 - 651
Target Start/End: Original strand, 6364362 - 6364611
Alignment:
Q  402 tataacctttcttagctggttttctgccggttctcccccttagagggtaaggcaaggtgttggatcctccaataacgggacgagccaaccttgcgtactt 501  Q
    ||||||||||   ||||| ||| |||||||||||||| ||| |||||||||| | |||| | |||||||||| ||| ||||||||||| || |||| |||    
T  6364362 tataacctttacgagctgctttcctgccggttctccctcttcgagggtaagggagggtgctagatcctccaacaacaggacgagccaaactagcgttctt 6364461  T
Q  502 atcaggatcacccaagtcattgtaaacatcatagtcatagatcctatcatgttccttgcgctgacccgttccatctcctcttaaagtcttcaattcttct 601  Q
     ||   ||||||||| |||||||| |||||||| ||||| || || ||   |||||| ||||  || |||||||||||||||||||||||||||||||||    
T  6364462 gtccacatcacccaaatcattgtagacatcataatcatatattctttcccattccttacgctctccagttccatctcctcttaaagtcttcaattcttct 6364561  T
Q  602 tgtctatagtagactaatggagctggtgtttcacttggaaggtatgtcta 651  Q
    ||||| ||||||||||| ||||||||||||||||||||||||||||||||    
T  6364562 tgtctgtagtagactaaaggagctggtgtttcacttggaaggtatgtcta 6364611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 376 - 657
Target Start/End: Original strand, 6290371 - 6290652
Alignment:
Q  376 aagtgtttaaatagaatataaaagcatataacctttcttagctggttttctgccggttctcccccttagagggtaaggcaaggtgttggatcctccaata 475  Q
    ||||||||||| ||| ||||||||  |||||||||||||||||||||  ||||||||||| |||||| |||||||||| ||  || | ||||| |||| |    
T  6290371 aagtgtttaaaaagagtataaaagtttataacctttcttagctggttccctgccggttcttccccttcgagggtaagggaaattgctcgatcccccaaga 6290470  T
Q  476 acgggacgagccaaccttgcgtacttatcaggatcacccaagtcattgtaaacatcatagtcatagatcctatcatgttccttgcgctgacccgttccat 575  Q
    |   |||| |||||    |  | |   ||||| ||||| || |||||||| ||||| || ||||| || || ||   |||||||||||  || |||||||    
T  6290471 atttgacgcgccaattgaggtttcgagtcaggctcacctaaatcattgtagacatcgtaatcatatattctttcccattccttgcgctctcctgttccat 6290570  T
Q  576 ctcctcttaaagtcttcaattcttcttgtctatagtagactaatggagctggtgtttcacttggaaggtatgtctatatttt 657  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  6290571 ctcctcttaaagtcttcaattcttcttgtctatagtacactaatggagctggtgtttcacttggaaggtatgtctatatttt 6290652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 509 - 658
Target Start/End: Original strand, 6371300 - 6371449
Alignment:
Q  509 tcacccaagtcattgtaaacatcatagtcatagatcctatcatgttccttgcgctgacccgttccatctcctcttaaagtcttcaattcttcttgtctat 608  Q
    |||||||| |||||||| ||||| |||||||||||||||||   ||| ||||||| |||||||||||||||||||||||||||||| ||||||||||| |    
T  6371300 tcacccaaatcattgtagacatcgtagtcatagatcctatcccattctttgcgctcacccgttccatctcctcttaaagtcttcaactcttcttgtctgt 6371399  T
Q  609 agtagactaatggagctggtgtttcacttggaaggtatgtctatattttt 658  Q
    ||||||||||||||||||||||||||||| ||||||||||||| ||||||    
T  6371400 agtagactaatggagctggtgtttcacttagaaggtatgtctacattttt 6371449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 143 - 286
Target Start/End: Original strand, 6322253 - 6322396
Alignment:
Q  143 taattgaggtatgacattttgagatactgatttgagtatgtaaacaagaaaatctgaagacttcaagtgaccaaatgattcatctcttggaagataaata 242  Q
    |||||||||||||| | |||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||  |||| |    
T  6322253 taattgaggtatgaaactttgagaagctgatttgagtatgtaaacaagaaaatctgaagacttcaagtgaccaaatgcttcatctcttggaacgtaaaca 6322352  T
Q  243 tactcgctccgtctctcacttttaggatctgcacaaatacaaaa 286  Q
     | |||  |||||||||||||||||||||||  || ||||||||    
T  6322353 aagtcgtcccgtctctcacttttaggatctgttcacatacaaaa 6322396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 503 - 651
Target Start/End: Original strand, 6353590 - 6353738
Alignment:
Q  503 tcaggatcacccaagtcattgtaaacatcatagtcatagatcctatcatgttccttgcgctgacccgttccatctcctcttaaagtcttcaattcttctt 602  Q
    ||||| |||||||| |||||||| ||||| || ||||| || || ||   |||||||||||  || ||||||||||||||||||||||||||||||||||    
T  6353590 tcaggctcacccaaatcattgtagacatcgtaatcatatattctttcccattccttgcgctctccagttccatctcctcttaaagtcttcaattcttctt 6353689  T
Q  603 gtctatagtagactaatggagctggtgtttcacttggaaggtatgtcta 651  Q
    |||| ||||| ||||||||||| ||||||||||||||||||||||||||    
T  6353690 gtctgtagtacactaatggagccggtgtttcacttggaaggtatgtcta 6353738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 143 - 266
Target Start/End: Original strand, 6332837 - 6332960
Alignment:
Q  143 taattgaggtatgacattttgagatactgatttgagtatgtaaacaagaaaatctgaagacttcaagtgaccaaatgattcatctcttggaagataaata 242  Q
    |||||||||||| |||||||||||| ||||||| ||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||  |||| |    
T  6332837 taattgaggtataacattttgagatgctgatttcagtatataaacaagaaagtctgaagacttcaagtggccaaatgattcatctcttggaatgtaaaca 6332936  T
Q  243 tactcgctccgtctctcactttta 266  Q
     | |||||||| ||||||||||||    
T  6332937 aagtcgctccgactctcactttta 6332960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 511 - 647
Target Start/End: Original strand, 6392094 - 6392230
Alignment:
Q  511 acccaagtcattgtaaacatcatagtcatagatcctatcatgttccttgcgctgacccgttccatctcctcttaaagtcttcaattcttcttgtctatag 610  Q
    |||||| |||||||| |||||||| ||||| || || ||   |||||| ||||  || |||||||||||||||||||| ||||||||||||||||| |||    
T  6392094 acccaaatcattgtagacatcataatcatatattctgtcccattccttacgctctccagttccatctcctcttaaagtattcaattcttcttgtctgtag 6392193  T
Q  611 tagactaatggagctggtgtttcacttggaaggtatg 647  Q
    || | |||||||||||||||||| ||| |||||||||    
T  6392194 tacagtaatggagctggtgtttcccttagaaggtatg 6392230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 509 - 639
Target Start/End: Original strand, 6264927 - 6265057
Alignment:
Q  509 tcacccaagtcattgtaaacatcatagtcatagatcctatcatgttccttgcgctgacccgttccatctcctcttaaagtcttcaattcttcttgtctat 608  Q
    |||||||| ||||||||||||||||| ||||| |  || ||   ||| |||||||  ||||||||||||||||||||||||||||| |||  ||||||||    
T  6264927 tcacccaaatcattgtaaacatcataatcataaactctgtcccattctttgcgctcccccgttccatctcctcttaaagtcttcaactctaattgtctat 6265026  T
Q  609 agtagactaatggagctggtgtttcacttgg 639  Q
    ||||||| | |||||| ||||||||||||||    
T  6265027 agtagacaagtggagcaggtgtttcacttgg 6265057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 146 - 240
Target Start/End: Original strand, 6353232 - 6353326
Alignment:
Q  146 ttgaggtatgacattttgagatactgatttgagtatgtaaacaagaaaatctgaagacttcaagtgaccaaatgattcatctcttggaagataaa 240  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||   ||| ||||| ||||||||||||||||| ||||    
T  6353232 ttgaggtatgacattttgagatgctgatttgagtatgtaaacaagaaagtctgatgactttgtgtgtccaaaagattcatctcttggaaggtaaa 6353326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 143 - 284
Target Start/End: Original strand, 6364025 - 6364168
Alignment:
Q  143 taattgaggtatgacattttgagatactgatttgagtatgtaaacaagaaaatctgaagacttcaagtgaccaaatgattcatctcttggaagataaata 242  Q
    |||| |||||||||||||||||||| | ||||||||||||| ||||||||| ||||| |||||   ||| |||||||||||||||||||| || |||| |    
T  6364025 taatcgaggtatgacattttgagatgcagatttgagtatgtgaacaagaaagtctgatgactttgtgtgtccaaatgattcatctcttgggaggtaaaca 6364124  T
Q  243 tactcgctccgtctctcacttttaggatctg--cacaaatacaa 284  Q
       || || || |||||||| ||||||||||  |||||||||||    
T  6364125 gtgtcacttcgactctcactcttaggatctgttcacaaatacaa 6364168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 149 - 273
Target Start/End: Original strand, 6424909 - 6425033
Alignment:
Q  149 aggtatgacattttgagatactgatttgagtatgtaaacaagaaaatctgaagacttcaagtgaccaaatgattcatctcttggaagataaatatactcg 248  Q
    |||||||| |||||||||| |||||||||||||| || ||||||| |||||||||||   ||| |||||||  |||||||||||||| |||| |    ||    
T  6424909 aggtatgatattttgagatgctgatttgagtatgaaagcaagaaagtctgaagactttgtgtgtccaaatgcctcatctcttggaaggtaaacagtgccg 6425008  T
Q  249 ctccgtctctcacttttaggatctg 273  Q
    ||||| |||||||| ||||||||||    
T  6425009 ctccgactctcactcttaggatctg 6425033  T

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Target: chr8; HSP #17
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 152 - 273
Target Start/End: Original strand, 6289818 - 6289939
Alignment:
Q  152 tatgacattttgagatactgatttgagtatgtaaacaagaaaatctgaagacttcaagtgaccaaatgattcatctcttggaagataaatatactcgctc 251  Q
    ||||| || ||||||| ||||||| |||| || | ||||||| ||||||||||||  |||| |||||||||||||||||||||  |||| | |  || ||    
T  6289818 tatgaaatcttgagatgctgatttcagtaggttatcaagaaattctgaagacttcttgtgatcaaatgattcatctcttggaatgtaaacaaagccgttc 6289917  T
Q  252 cgtctctcacttttaggatctg 273  Q
    || |||||||||||||||||||    
T  6289918 cgactctcacttttaggatctg 6289939  T

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Target: chr8; HSP #18
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 169 - 273
Target Start/End: Original strand, 7460153 - 7460257
Alignment:
Q  169 ctgatttgagtatgtaaacaagaaaatctgaagacttcaagtgaccaaatgattcatctcttggaagataaatatactcgctccgtctctcacttttagg 268  Q
    ||||||||||||  ||| ||||||| || || ||||||||||||||||||||||||||||||||||  ||||||   || || || |||||||| |||||    
T  7460153 ctgatttgagtacataaccaagaaagtcagatgacttcaagtgaccaaatgattcatctcttggaacgtaaatagcgtcacttcgactctcactcttagg 7460252  T
Q  269 atctg 273  Q
    |||||    
T  7460253 atctg 7460257  T

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Target: chr8; HSP #19
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 169 - 234
Target Start/End: Original strand, 7471729 - 7471794
Alignment:
Q  169 ctgatttgagtatgtaaacaagaaaatctgaagacttcaagtgaccaaatgattcatctcttggaa 234  Q
    ||||||||||||  ||| ||||||| || || ||||||||||||||||||||||||||||||||||    
T  7471729 ctgatttgagtacataaccaagaaagtcagatgacttcaagtgaccaaatgattcatctcttggaa 7471794  T

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Target: chr8; HSP #20
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 511 - 647
Target Start/End: Original strand, 6411258 - 6411394
Alignment:
Q  511 acccaagtcattgtaaacatcatagtcatagatcctatcatgttccttgcgctgacccgttccatctcctcttaaagtcttcaattcttcttgtctatag 610  Q
    |||||| |||||||| |||||||| ||||| || || ||   | |||| ||||  || ||||||||||||||||||||||||||||||||||   | |||    
T  6411258 acccaaatcattgtagacatcataatcatatattctgtcccataccttacgctctccagttccatctcctcttaaagtcttcaattcttctttgatgtag 6411357  T
Q  611 tagactaatggagctggtgtttcacttggaaggtatg 647  Q
    || ||||||||   ||||| || ||||||||||||||    
T  6411358 tacactaatggttgtggtgcttgacttggaaggtatg 6411394  T

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Target: chr8; HSP #21
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 512 - 642
Target Start/End: Original strand, 6458262 - 6458392
Alignment:
Q  512 cccaagtcattgtaaacatcatagtcatagatcctatcatgttccttgcgctgacccgttccatctcctcttaaagtcttcaattcttcttgtctatagt 611  Q
    ||||| ||||| |||| |||||| ||||| |  |||||   ||| |||||||  || |||||||||||||||| ||||| ||| ||||||| |||||| |    
T  6458262 cccaaatcattataaatatcataatcataaactctatccgcttctttgcgctctccagttccatctcctcttagagtctgcaactcttcttctctataat 6458361  T
Q  612 agactaatggagctggtgtttcacttggaag 642  Q
        ||||||||||||||||| |||||||||    
T  6458362 gatttaatggagctggtgtttgacttggaag 6458392  T

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Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 518 - 642
Target Start/End: Original strand, 6452175 - 6452299
Alignment:
Q  518 tcattgtaaacatcatagtcatagatcctatcatgttccttgcgctgacccgttccatctcctcttaaagtcttcaattcttcttgtctatagtagacta 617  Q
    ||||| ||||||||||| || || ||||||||   ||| ||||| |  || |||||||||||||||| | ||| ||| ||||||| |||| |||    ||    
T  6452175 tcattataaacatcataatcgtatatcctatcccattctttgcgttctccggttccatctcctcttagattctgcaactcttcttctctaaagtgattta 6452274  T
Q  618 atggagctggtgtttcacttggaag 642  Q
    ||||||||||||||| |||||||||    
T  6452275 atggagctggtgtttgacttggaag 6452299  T

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Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 188 - 241
Target Start/End: Original strand, 6451892 - 6451945
Alignment:
Q  188 aagaaaatctgaagacttcaagtgaccaaatgattcatctcttggaagataaat 241  Q
    |||||| ||||| |||||||||||||||||   |||||||||||||| ||||||    
T  6451892 aagaaagtctgatgacttcaagtgaccaaaattttcatctcttggaacataaat 6451945  T

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Target: chr5 (Bit Score: 51; Significance: 7e-20; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 572 - 650
Target Start/End: Complemental strand, 9603113 - 9603035
Alignment:
Q  572 ccatctcctcttaaagtcttcaattcttcttgtctatagtagactaatggagctggtgtttcacttggaaggtatgtct 650  Q
    ||||||||||||| | | | ||||||||||||||| ||||||||||||||||||||||||| ||||||||| |||||||    
T  9603113 ccatctcctcttagattttgcaattcttcttgtctgtagtagactaatggagctggtgtttgacttggaagatatgtct 9603035  T

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Target: chr2 (Bit Score: 50; Significance: 3e-19; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 518 - 647
Target Start/End: Original strand, 42694397 - 42694526
Alignment:
Q  518 tcattgtaaacatcatagtcatagatcctatcatgttccttgcgctgacccgttccatctcctcttaaagtcttcaattcttcttgtctatagtagacta 617  Q
    |||||||| |||||||| |||||||| || ||   ||| ||||| |  || |||||||||||||||||| | ||||||||||||| |||||| | |||||    
T  42694397 tcattgtagacatcataatcatagattctttcccattctttgcgttctcctgttccatctcctcttaaattgttcaattcttcttctctataatggacta 42694496  T
Q  618 atggagctggtgtttcacttggaaggtatg 647  Q
    ||||||| ||||||||||| ||||| ||||    
T  42694497 atggagccggtgtttcactaggaagatatg 42694526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 518 - 642
Target Start/End: Complemental strand, 42687260 - 42687136
Alignment:
Q  518 tcattgtaaacatcatagtcatagatcctatcatgttccttgcgctgacccgttccatctcctcttaaagtcttcaattcttcttgtctatagtagacta 617  Q
    |||||||| ||||| || || |||||||| ||||||  ||||||||  || ||||||||||| |||||| | | ||||||||||| |||||| | |||||    
T  42687260 tcattgtagacatcgtaatcgtagatcctttcatgtaacttgcgctctcctgttccatctccccttaaattttgcaattcttcttctctatacttgacta 42687161  T
Q  618 atggagctggtgtttcacttggaag 642  Q
     ||||| ||||||||||||||||||    
T  42687160 gtggagatggtgtttcacttggaag 42687136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 156 - 273
Target Start/End: Original strand, 42694042 - 42694159
Alignment:
Q  156 acattttgagatactgatttgagtatgtaaacaagaaaatctgaagacttcaagtgaccaaatgattcatctcttggaagataaatatactcgctccgtc 255  Q
    |||||||||||||||| ||| |||   |||  |||||||||||| || |||||||||||||| | |||||||||||||||||| | | | || ||||  |    
T  42694042 acattttgagatactgctttcagtccataagtaagaaaatctgatgatttcaagtgaccaaaagcttcatctcttggaagatacacaaaatcactcctac 42694141  T
Q  256 tctcacttttaggatctg 273  Q
    ||||||||||||||||||    
T  42694142 tctcacttttaggatctg 42694159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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