View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0733_low_31 (Length: 436)
Name: NF0733_low_31
Description: NF0733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0733_low_31 |
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| [»] scaffold0002 (1 HSPs) |
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| [»] scaffold0330 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 300; Significance: 1e-168; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 1 - 371
Target Start/End: Original strand, 18343726 - 18344099
Alignment:
| Q |
1 |
tagaatacaatcgcgggattttttgacatattagaaatttgtatatcttgctttgatatagaaccaaatatggattcttatagaccttttttgctatcca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
18343726 |
tagaatacaatcgcgggattttttgacatattagaaatttgtatatcttgctttgatatagaaccaaatatggattcttatagaccatttttgctatcca |
18343825 |
T |
|
| Q |
101 |
tatctaactagataatgttgttttgatataaggttctaacgaatccatatttctcnnnnnnnnn---attatcatattggcaaaaatttctaaattcnnn |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| |
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| T |
18343826 |
tatctaactagataatgttgttttgatataaggttctaacgaatccatatttgtcttttttttttttattatcatattggcaaaaatttctaaattcaaa |
18343925 |
T |
|
| Q |
198 |
nnnntccacattttcgcgggcgaatatttactctttcattataaatttaagatgtaatgttgggttagtccacaactcctcaaaaaataatgaattctta |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18343926 |
aaaatccacattttcgcgggcgaatatttactctttcattataaatttaagatgtaatgttgggttagtccacaactcctcaaaaaataatgaattctta |
18344025 |
T |
|
| Q |
298 |
gttccgtccgccatcccatctaacgaatcagtaagattatgaaatttaatataatcttaggtattcacaggttc |
371 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18344026 |
gttccgtccgccatcccatctaatgaatcagtaagattatgaaatttaatataatcttaggtattcacaggttc |
18344099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 202 - 332
Target Start/End: Complemental strand, 36639000 - 36638870
Alignment:
| Q |
202 |
tccacattttcgcgggcgaatatttactctttcattataaatttaagatgtaatgttgggttagtccacaactcctcaaaaaataatgaattcttagttc |
301 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36639000 |
tccacattttcgcgggcgaatattcactctttcattataaatttaagatgtaatgttgggttagtccacaactcctcaaaaaataatgaattcttagttc |
36638901 |
T |
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| Q |
302 |
cgtccgccatcccatctaacgaatcagtaag |
332 |
Q |
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||||||||||||||||||| |||| |||||| |
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| T |
36638900 |
cgtccgccatcccatctaatgaattagtaag |
36638870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 118 - 152
Target Start/End: Complemental strand, 36639090 - 36639056
Alignment:
| Q |
118 |
ttgttttgatataaggttctaacgaatccatattt |
152 |
Q |
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|||||||||||||| |||||||||||||||||||| |
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| T |
36639090 |
ttgttttgatataatgttctaacgaatccatattt |
36639056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 29 - 371
Target Start/End: Complemental strand, 163589 - 163237
Alignment:
| Q |
29 |
tattagaaatttgtatatcttgctttgatatagaaccaaatatggattcttatagaccttttttgctatccatatctaactagataatgttgttttgata |
128 |
Q |
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||||||||||||||||||||||||| |||||| ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
163589 |
tattagaaatttgtatatcttgcttggatataaaaccaaatatggatttttatagaccatttttgctatccatatctaactagataatgttgttttgata |
163490 |
T |
|
| Q |
129 |
taaggttctaacgaatccatatttctcnnnnnnnnn----attatcatat----tggcaaaaatttctaaattcnnnnnnn-tccacattttcgcgggcg |
219 |
Q |
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|||||||||||||||||||||||| || |||||||||| ||||||||||||||||||| |||||||||||||||||| |
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| T |
163489 |
taaggttctaacgaatccatatttgtctttttttttttttattatcatatatattggcaaaaatttctaaattaaaaaaaaatccacattttcgcgggcg |
163390 |
T |
|
| Q |
220 |
aatattt-actctttcattataaatttaagatgtaatgttgggttagtccacaactcctcaaaaaataatgaattcttagttccgtccgccatcccatct |
318 |
Q |
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||||||| |||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
163389 |
aatattttactctttcattataaatttaagatgtgatgttggattagtccacaactcctcaaaaaataatgaattcttagttccgtccaccatcccatct |
163290 |
T |
|
| Q |
319 |
aacgaatcagtaagattatgaaatttaatataatcttaggtattcacaggttc |
371 |
Q |
| |
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|| ||||||||||||||||||||||||||||||||||| ||||||||| |||| |
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| T |
163289 |
aatgaatcagtaagattatgaaatttaatataatcttaagtattcacaagttc |
163237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 121; Significance: 8e-62; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 56 - 362
Target Start/End: Complemental strand, 9857946 - 9857643
Alignment:
| Q |
56 |
atatagaaccaaatatggattcttatagaccttttttgctatccatatctaactagataatgttgttttgatataaggttctaacgaatccatatttctc |
155 |
Q |
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|
||||||||| |||||||||||| |||||||| ||||||||||| || |||||||||||||||||||||||||| ||||||||| ||||||||||| || |
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| T |
9857946 |
atatagaacgaaatatggattcgtatagaccatttttgctatc-atgtctaactagataatgttgttttgata--aggttctaaaaaatccatatttgtc |
9857850 |
T |
|
| Q |
156 |
nnnnnnnnnattatcatattggcaaaaatttctaaattcnnnnnnntccacattttcgcgggcgaatattt-actctttcattataaatttaagatgtaa |
254 |
Q |
| |
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| ||||||||||||||||||| ||||||| ||||||||||| | | |||||||| |||||||||||||||||||||||||||| |
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|
| T |
9857849 |
ttttttttt-taatcatattggcaaaaatttataaattcaaaaaaatccacattttcacatgtgaatattttactctttcattataaatttaagatgtaa |
9857751 |
T |
|
| Q |
255 |
tgttgggttagtccacaactcctcaaaaaataatgaattcttagttccgtccgccatcccatctaacgaatcagtaagattatgaaatttaatataatct |
354 |
Q |
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||| | |||| |||||||||||||||||||||||||||||||||| |||| |||||| |||||| |||||| ||||||||| |||||||||||||| | |
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| T |
9857750 |
tgtcagattagcccacaactcctcaaaaaataatgaattcttagttttgtccaccatccaatctaatgaatcaataagattattaaatttaatataattt |
9857651 |
T |
|
| Q |
355 |
taggtatt |
362 |
Q |
| |
|
||||||| |
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|
| T |
9857650 |
gaggtatt |
9857643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 31058766 - 31058724
Alignment:
| Q |
1 |
tagaatacaatcgcgggattttttgacatattagaaatttgta |
43 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31058766 |
tagaatacaatcgcgggattttttgacatattagaaatttgta |
31058724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0330 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0330
Description:
Target: scaffold0330; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 29 - 74
Target Start/End: Original strand, 13433 - 13478
Alignment:
| Q |
29 |
tattagaaatttgtatatcttgctttgatatagaaccaaatatgga |
74 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
13433 |
tattagaaatttgtatattttgctttgatatagaaccaaatatgga |
13478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 202 - 250
Target Start/End: Complemental strand, 31878258 - 31878210
Alignment:
| Q |
202 |
tccacattttcgcgggcgaatatttactctttcattataaatttaagat |
250 |
Q |
| |
|
|||||||||| ||| |||||| ||||||||| |||||||||||||||| |
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|
| T |
31878258 |
tccacatttttgcgaccgaataattactctttaattataaatttaagat |
31878210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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