View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0733_low_34 (Length: 426)
Name: NF0733_low_34
Description: NF0733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0733_low_34 |
 | |
|
| [»] chr8 (4 HSPs) |
| |
|
| [»] scaffold0095 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 271; Significance: 1e-151; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 87 - 426
Target Start/End: Complemental strand, 39461940 - 39461602
Alignment:
| Q |
87 |
atcatcaattggagtaacaggagtgacagccatagagttctcatcctgttttggtgcctcaagatgcacctttttgattgctaccttagacctccaatga |
186 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
39461940 |
atcatcaattggagtaacaggagtgacagccatagagttctcatcctgttttggtgcctcaagatgcacctttttgattgctaccttagacttctct--- |
39461844 |
T |
|
| Q |
187 |
gatggacatc-atccacttgccatttcacttaaaattctccatgtatcctatccaacccacataaccaaacctttagatccacatttacagtctaacatt |
285 |
Q |
| |
|
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
39461843 |
-atggaagtccatccacttgccatttcacttaaaattctccatgtatcctatccaacccacataaccaaacctttagattcacatttacagtctaacatt |
39461745 |
T |
|
| Q |
286 |
aattcaatactttactataatgaaaacgaataaataaacaaataagcagaataaccaacaacataagcaaaccttgagatcacatttgagcgaatatcta |
385 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39461744 |
aattcagtactttactataatgaaaacgaataaataaacaaataagcagaataaccaacaacataagcaaaccttgagatcacatttgagcgaatatcta |
39461645 |
T |
|
| Q |
386 |
tgac--agttaaactcaggatccttgagtaatgtacgccttta |
426 |
Q |
| |
|
|||| |||||||||||||||||||||||| |||||||||||| |
|
|
| T |
39461644 |
tgacatagttaaactcaggatccttgagtattgtacgccttta |
39461602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 313 - 413
Target Start/End: Complemental strand, 38813358 - 38813255
Alignment:
| Q |
313 |
gaataaataaacaaataagcagaataaccaacaacataagcaaaccttgagatc-acatttgagcgaatatctatgaca--gttaaactcaggatccttg |
409 |
Q |
| |
|
||||||||||||||||||||| || |||||||| |||||||||||||||||||| | ||||||||| |||| | ||| ||||||||||||||||||| |
|
|
| T |
38813358 |
gaataaataaacaaataagcacaacaaccaacatcataagcaaaccttgagatcaatatttgagcggatatacaacacatggttaaactcaggatccttg |
38813259 |
T |
|
| Q |
410 |
agta |
413 |
Q |
| |
|
|||| |
|
|
| T |
38813258 |
agta |
38813255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 99 - 291
Target Start/End: Complemental strand, 39454370 - 39454179
Alignment:
| Q |
99 |
agtaacaggagtgacagccatagagttctcatcctgttttggtgcctcaagatgcacctttttgattgctaccttagac--ctccaatgagatggacatc |
196 |
Q |
| |
|
|||||| | ||||| |||||||||||| ||||||||||||||| || | ||| || | ||||||||||| |||||||| |||| ||| | || |
|
|
| T |
39454370 |
agtaaccgcagtgatagccatagagttgtcatcctgttttggtaccggatgattcaaccttttgattgctcccttagacttctccctggagctcga---- |
39454275 |
T |
|
| Q |
197 |
atccacttgccatttcacttaaaattctccatgtatcctatccaaccc-acataaccaaacctttagatccacattt-acagtctaacattaattca |
291 |
Q |
| |
|
|||| || ||||| |||| ||| |||||||| ||||||||||||||| ||||||| ||||| |||||||||||||| || ||| |||||||||||| |
|
|
| T |
39454274 |
-tccatttcccattacactcaaatttctccatttatcctatccaaccccacataacaaaaccattagatccacatttaactgtccaacattaattca |
39454179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 221 - 272
Target Start/End: Complemental strand, 38813429 - 38813378
Alignment:
| Q |
221 |
ttctccatgtatcctatccaacccacataaccaaacctttagatccacattt |
272 |
Q |
| |
|
|||||||| |||||||||||||| ||||||||||||||| |||| ||||||| |
|
|
| T |
38813429 |
ttctccatttatcctatccaaccaacataaccaaaccttgagattcacattt |
38813378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 69; Significance: 8e-31; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 245 - 418
Target Start/End: Complemental strand, 12086510 - 12086341
Alignment:
| Q |
245 |
acataaccaaacctttagatccacattt-acagtctaacattaattcaatactttactataatgaaaacgaataaataaacaaataagcagaataaccaa |
343 |
Q |
| |
|
||||| ||||||||||||||||||||| || ||| |||||||||||||||| ||| |||| ||||| ||||||||||||||| ||||| || |||||| |
|
|
| T |
12086510 |
acatagccaaacctttagatccacattagacggtccaacattaattcaatacattattatagggaaaaggaataaataaacaaacaagcacaacaaccaa |
12086411 |
T |
|
| Q |
344 |
caacataagcaaaccttgagatc-acatttgagcgaatatctatgacagttaaactcaggatccttgagtaatgta |
418 |
Q |
| |
|
|||||||| |||||||||||||| ||||||||| |||||| ||||||||| |||||||||||||| |||| |
|
|
| T |
12086410 |
caacataaccaaaccttgagatcgacatttgagtgaatat------gagttaaactaaggatccttgagtattgta |
12086341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 86 - 177
Target Start/End: Complemental strand, 12086670 - 12086579
Alignment:
| Q |
86 |
catcatcaattggagtaacaggagtgacagccatagagttctcatcctgttttggtgcctcaagatgcacctttttgattgctaccttagac |
177 |
Q |
| |
|
|||||||| |||||||||| |||| |||||||| || | ||||| ||||||||||||| | || |||| | |||||||||||||||||| |
|
|
| T |
12086670 |
catcatcacttggagtaaccggagctacagccatcgaaatgtcatcttgttttggtgcctgatgacacaccctcttgattgctaccttagac |
12086579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 105 - 173
Target Start/End: Complemental strand, 12079607 - 12079539
Alignment:
| Q |
105 |
aggagtgacagccatagagttctcatcctgttttggtgcctcaagatgcacctttttgattgctacctt |
173 |
Q |
| |
|
||||||||||||||||||||| || || ||| ||||||||| | ||||||| |||| |||||| |||| |
|
|
| T |
12079607 |
aggagtgacagccatagagttgtcctcatgtcttggtgcctgataatgcacccttttcattgctccctt |
12079539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 317 - 419
Target Start/End: Original strand, 39409525 - 39409630
Alignment:
| Q |
317 |
aaataaacaaataagcagaataaccaacaacataagcaaaccttgaga-tcacatttgagcgaatatctatgaca--gttaaactcaggatccttgagta |
413 |
Q |
| |
|
||||||||||||||||| || |||||||||||| |||||||||||||| | |||||||||| ||||| || |||| ||||||||| |||| |||||||| |
|
|
| T |
39409525 |
aaataaacaaataagcacaagaaccaacaacattagcaaaccttgagattgacatttgagcaaatatataagacacggttaaactctggattcttgagta |
39409624 |
T |
|
| Q |
414 |
atgtac |
419 |
Q |
| |
|
||||| |
|
|
| T |
39409625 |
ctgtac |
39409630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0095 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0095
Description:
Target: scaffold0095; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 99 - 291
Target Start/End: Original strand, 15370 - 15561
Alignment:
| Q |
99 |
agtaacaggagtgacagccatagagttctcatcctgttttggtgcctcaagatgcacctttttgattgctaccttagac--ctccaatgagatggacatc |
196 |
Q |
| |
|
|||||| | ||||| |||||||||||| ||||||||||||||| || | ||| || | ||||||||||| |||||||| |||| ||| | || |
|
|
| T |
15370 |
agtaaccgcagtgatagccatagagttgtcatcctgttttggtaccggatgattcaaccttttgattgctcccttagacttctccctggagctcga---- |
15465 |
T |
|
| Q |
197 |
atccacttgccatttcacttaaaattctccatgtatcctatccaa-cccacataaccaaacctttagatccacattt-acagtctaacattaattca |
291 |
Q |
| |
|
|||| || ||||| |||| ||| |||||||| |||||||||||| |||||||||| ||||| |||||||||||||| || ||| |||||||||||| |
|
|
| T |
15466 |
-tccatttcccattacactcaaatttctccatttatcctatccaaccccacataacaaaaccattagatccacatttaactgtccaacattaattca |
15561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 3979 times since January 2019
Visitors: 4825