View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0733_low_35 (Length: 423)
Name: NF0733_low_35
Description: NF0733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0733_low_35 |
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| [»] chr8 (4 HSPs) |
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| [»] scaffold0095 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 312; Significance: 1e-176; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 87 - 423
Target Start/End: Complemental strand, 39461940 - 39461602
Alignment:
| Q |
87 |
atcatcaattggagtaacaggagtgacagccatagagttctcatcctgttttggtgcctcaagatgcacctttttgattgctaccttagacttctctatg |
186 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39461940 |
atcatcaattggagtaacaggagtgacagccatagagttctcatcctgttttggtgcctcaagatgcacctttttgattgctaccttagacttctctatg |
39461841 |
T |
|
| Q |
187 |
gaggtccatccacttgccatttcacttaaaattctccatgtatcctatccaacccacataaccaaacctttagatccacatttacagtctaacattaatt |
286 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
39461840 |
gaagtccatccacttgccatttcacttaaaattctccatgtatcctatccaacccacataaccaaacctttagattcacatttacagtctaacattaatt |
39461741 |
T |
|
| Q |
287 |
caatactttactataatgaaaacgaataaataaacaaataagcagaataaccaacaacataagcaaaccttgagatcacatttgagcgaatatctatgac |
386 |
Q |
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| T |
39461740 |
cagtactttactataatgaaaacgaataaataaacaaataagcagaataaccaacaacataagcaaaccttgagatcacatttgagcgaatatctatgac |
39461641 |
T |
|
| Q |
387 |
--agttaaactcaggatccttgagtaatgtacgccttta |
423 |
Q |
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|||||||||||||||||||||||| |||||||||||| |
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| T |
39461640 |
atagttaaactcaggatccttgagtattgtacgccttta |
39461602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 99 - 288
Target Start/End: Complemental strand, 39454370 - 39454179
Alignment:
| Q |
99 |
agtaacaggagtgacagccatagagttctcatcctgttttggtgcctcaagatgcacctttttgattgctaccttagacttctctatggaggtccatcca |
198 |
Q |
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| T |
39454370 |
agtaaccgcagtgatagccatagagttgtcatcctgttttggtaccggatgattcaaccttttgattgctcccttagacttctccctggagctcgatcca |
39454271 |
T |
|
| Q |
199 |
cttgccatttcacttaaaattctccatgtatcctatccaa-cccacataaccaaacctttagatccacattt-acagtctaacattaattca |
288 |
Q |
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| T |
39454270 |
tttcccattacactcaaatttctccatttatcctatccaaccccacataacaaaaccattagatccacatttaactgtccaacattaattca |
39454179 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 310 - 410
Target Start/End: Complemental strand, 38813358 - 38813255
Alignment:
| Q |
310 |
gaataaataaacaaataagcagaataaccaacaacataagcaaaccttgagatc-acatttgagcgaatatctatgaca--gttaaactcaggatccttg |
406 |
Q |
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||||||||||||||||||||| || |||||||| |||||||||||||||||||| | ||||||||| |||| | ||| ||||||||||||||||||| |
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| T |
38813358 |
gaataaataaacaaataagcacaacaaccaacatcataagcaaaccttgagatcaatatttgagcggatatacaacacatggttaaactcaggatccttg |
38813259 |
T |
|
| Q |
407 |
agta |
410 |
Q |
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|||| |
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| T |
38813258 |
agta |
38813255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 218 - 269
Target Start/End: Complemental strand, 38813429 - 38813378
Alignment:
| Q |
218 |
ttctccatgtatcctatccaacccacataaccaaacctttagatccacattt |
269 |
Q |
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|||||||| |||||||||||||| ||||||||||||||| |||| ||||||| |
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| T |
38813429 |
ttctccatttatcctatccaaccaacataaccaaaccttgagattcacattt |
38813378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0095 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: scaffold0095
Description:
Target: scaffold0095; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 99 - 288
Target Start/End: Original strand, 15370 - 15561
Alignment:
| Q |
99 |
agtaacaggagtgacagccatagagttctcatcctgttttggtgcctcaagatgcacctttttgattgctaccttagacttctctatggaggtccatcca |
198 |
Q |
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|||||| | ||||| |||||||||||| ||||||||||||||| || | ||| || | ||||||||||| ||||||||||||| ||||| || ||||| |
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| T |
15370 |
agtaaccgcagtgatagccatagagttgtcatcctgttttggtaccggatgattcaaccttttgattgctcccttagacttctccctggagctcgatcca |
15469 |
T |
|
| Q |
199 |
cttgccatttcacttaaaattctccatgtatcctatccaa-cccacataaccaaacctttagatccacattt-acagtctaacattaattca |
288 |
Q |
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|| ||||| |||| ||| |||||||| |||||||||||| |||||||||| ||||| |||||||||||||| || ||| |||||||||||| |
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| T |
15470 |
tttcccattacactcaaatttctccatttatcctatccaaccccacataacaaaaccattagatccacatttaactgtccaacattaattca |
15561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 69; Significance: 8e-31; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 242 - 415
Target Start/End: Complemental strand, 12086510 - 12086341
Alignment:
| Q |
242 |
acataaccaaacctttagatccacattt-acagtctaacattaattcaatactttactataatgaaaacgaataaataaacaaataagcagaataaccaa |
340 |
Q |
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||||| ||||||||||||||||||||| || ||| |||||||||||||||| ||| |||| ||||| ||||||||||||||| ||||| || |||||| |
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| T |
12086510 |
acatagccaaacctttagatccacattagacggtccaacattaattcaatacattattatagggaaaaggaataaataaacaaacaagcacaacaaccaa |
12086411 |
T |
|
| Q |
341 |
caacataagcaaaccttgagatc-acatttgagcgaatatctatgacagttaaactcaggatccttgagtaatgta |
415 |
Q |
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|||||||| |||||||||||||| ||||||||| |||||| ||||||||| |||||||||||||| |||| |
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| T |
12086410 |
caacataaccaaaccttgagatcgacatttgagtgaatat------gagttaaactaaggatccttgagtattgta |
12086341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 105 - 290
Target Start/End: Complemental strand, 12079607 - 12079418
Alignment:
| Q |
105 |
aggagtgacagccatagagttctcatcctgttttggtgcctcaagatgcacctttttgattgctaccttagacttctctatggaggtccatccacttgcc |
204 |
Q |
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||||||||||||||||||||| || || ||| ||||||||| | ||||||| |||| |||||| |||| | |||||| | || | ||||||||||||| |
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| T |
12079607 |
aggagtgacagccatagagttgtcctcatgtcttggtgcctgataatgcacccttttcattgctccctttggcttctccctcgaagcccatccacttgcc |
12079508 |
T |
|
| Q |
205 |
atttcacttaaaattctccatgtatcctatc---caacccacataaccaaacctttagatccaca-tttacagtctaacattaattcaat |
290 |
Q |
| |
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|| | || ||| ||| |||| ||||||||| |||||||||||| ||||||||||||||| | ||||| ||| ||||||||| |||| |
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| T |
12079507 |
atcacgctcaaatttcgccatttatcctatccaacaacccacataaagaaacctttagatccagattttacggtccaacattaatgcaat |
12079418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 86 - 181
Target Start/End: Complemental strand, 12086670 - 12086575
Alignment:
| Q |
86 |
catcatcaattggagtaacaggagtgacagccatagagttctcatcctgttttggtgcctcaagatgcacctttttgattgctaccttagacttct |
181 |
Q |
| |
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|||||||| |||||||||| |||| |||||||| || | ||||| ||||||||||||| | || |||| | |||||||||||||||||||||| |
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| T |
12086670 |
catcatcacttggagtaaccggagctacagccatcgaaatgtcatcttgttttggtgcctgatgacacaccctcttgattgctaccttagacttct |
12086575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 314 - 416
Target Start/End: Original strand, 39409525 - 39409630
Alignment:
| Q |
314 |
aaataaacaaataagcagaataaccaacaacataagcaaaccttgaga-tcacatttgagcgaatatctatgaca--gttaaactcaggatccttgagta |
410 |
Q |
| |
|
||||||||||||||||| || |||||||||||| |||||||||||||| | |||||||||| ||||| || |||| ||||||||| |||| |||||||| |
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|
| T |
39409525 |
aaataaacaaataagcacaagaaccaacaacattagcaaaccttgagattgacatttgagcaaatatataagacacggttaaactctggattcttgagta |
39409624 |
T |
|
| Q |
411 |
atgtac |
416 |
Q |
| |
|
||||| |
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|
| T |
39409625 |
ctgtac |
39409630 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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