View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0733_low_39 (Length: 369)

Name: NF0733_low_39
Description: NF0733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0733_low_39
NF0733_low_39
[»] chr8 (2 HSPs)
chr8 (16-169)||(42944135-42944288)
chr8 (239-267)||(42944037-42944065)
[»] chr3 (3 HSPs)
chr3 (8-97)||(25986595-25986684)
chr3 (18-104)||(54158617-54158702)
chr3 (22-104)||(48192825-48192906)
[»] chr4 (2 HSPs)
chr4 (16-90)||(33813471-33813545)
chr4 (8-85)||(49806925-49807002)
[»] chr5 (2 HSPs)
chr5 (18-97)||(11735815-11735895)
chr5 (21-88)||(11736271-11736338)
[»] chr1 (1 HSPs)
chr1 (18-70)||(36155546-36155598)
[»] chr2 (1 HSPs)
chr2 (20-66)||(19182776-19182822)


Alignment Details
Target: chr8 (Bit Score: 154; Significance: 1e-81; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 16 - 169
Target Start/End: Complemental strand, 42944288 - 42944135
Alignment:
Q  16 attgatatgtctgcccctagttgaaaactattgatacaaatgcccctgttcttcaattcatttggcgaacataactattttttcaacactttttaggaac 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42944288 attgatatgtctgcccctagttgaaaactattgatacaaatgcccctgttcttcaattcatttggcgaacataactattttttcaacactttttaggaac 42944189  T
Q  116 ttgcaggttctttctgaagcttctgtctattttacaaatgaaatggcgagaata 169  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42944188 ttgcaggttctttctgaagcttctgtctattttacaaatgaaatggcgagaata 42944135  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 239 - 267
Target Start/End: Complemental strand, 42944065 - 42944037
Alignment:
Q  239 atatgttccaagtttaaaatggcgaccat 267  Q
    |||||||||||||||||||||||||||||    
T  42944065 atatgttccaagtttaaaatggcgaccat 42944037  T

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Target: chr3 (Bit Score: 54; Significance: 6e-22; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 8 - 97
Target Start/End: Original strand, 25986595 - 25986684
Alignment:
Q  8 ccaagaatattgatatgtctgcccctagttgaaaactattgatacaaatgcccctgttcttcaattcatttggcgaacataactattttt 97  Q
    |||| |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||  || | ||||||||||| || ||||||    
T  25986595 ccaaaaatattgatatgtctgcccctagttgaaaattattgatacaattgcccctgttcttctttttagttggcgaacatgaccattttt 25986684  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 104
Target Start/End: Complemental strand, 54158702 - 54158617
Alignment:
Q  18 tgatatgtctgcccctagttgaaaactattgatacaaatgcccctgttcttcaattcatttggcgaacataactattttttcaacac 104  Q
    ||||||||||||||||| || |||| ||||| || |||||||| ||||||||||||   |||||||| ||| | |||||||||||||    
T  54158702 tgatatgtctgcccctatttcaaaattattgttaaaaatgcccttgttcttcaattaggttggcgaatatagc-attttttcaacac 54158617  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 104
Target Start/End: Original strand, 48192825 - 48192906
Alignment:
Q  22 atgtctgcccctagttgaaaactattgatacaaatgcccctgttcttcaattcatttggcgaacataactattttttcaacac 104  Q
    ||||||||| |||||| |||| |||||||| ||||| ||||||| |||||||   |||||||||||  | |||||||||||||    
T  48192825 atgtctgccactagttcaaaattattgataaaaatgtccctgttgttcaattaggttggcgaacatggc-attttttcaacac 48192906  T

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Target: chr4 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 16 - 90
Target Start/End: Complemental strand, 33813545 - 33813471
Alignment:
Q  16 attgatatgtctgcccctagttgaaaactattgatacaaatgcccctgttcttcaattcatttggcgaacataac 90  Q
    |||||||||||||||||||||| |||| |||||||| |||||||||||||||||| || | ||||||||||||||    
T  33813545 attgatatgtctgcccctagtttaaaattattgatagaaatgcccctgttcttcattttagttggcgaacataac 33813471  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 8 - 85
Target Start/End: Complemental strand, 49807002 - 49806925
Alignment:
Q  8 ccaagaatattgatatgtctgcccctagttgaaaactattgatacaaatgcccctgttcttcaattcatttggcgaac 85  Q
    |||| ||||||||||| |||||||||| || ||||  ||||||||||| |||| ||||||||| || |||||| ||||    
T  49807002 ccaaaaatattgatatatctgcccctaattcaaaatcattgatacaaaagcccttgttcttcatttgatttggtgaac 49806925  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 18 - 97
Target Start/End: Original strand, 11735815 - 11735895
Alignment:
Q  18 tgatatgtctgcccctagttgaaaactattgatacaaatgcccctgttcttcaattcatttggcgaacata-actattttt 97  Q
    |||||||||| ||||||||| |||| ||||||| ||| | ||| ||||||||| || |||||||||||||| |||||||||    
T  11735815 tgatatgtctacccctagttcaaaattattgatgcaatttcccttgttcttcattttatttggcgaacatacactattttt 11735895  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 21 - 88
Target Start/End: Complemental strand, 11736338 - 11736271
Alignment:
Q  21 tatgtctgcccctagttgaaaactattgatacaaatgcccctgttcttcaattcatttggcgaacata 88  Q
    ||||||||||||||||| |||| ||||||||||| ||||| | ||||||| ||||| || ||||||||    
T  11736338 tatgtctgcccctagttcaaaattattgatacaattgccctttttcttcatttcatctgacgaacata 11736271  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 36155546 - 36155598
Alignment:
Q  18 tgatatgtctgcccctagttgaaaactattgatacaaatgcccctgttcttca 70  Q
    |||||||||||||||||||||| ||||| || |||| |||||| |||||||||    
T  36155546 tgatatgtctgcccctagttgagaactaatgttacatatgcccttgttcttca 36155598  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 66
Target Start/End: Original strand, 19182776 - 19182822
Alignment:
Q  20 atatgtctgcccctagttgaaaactattgatacaaatgcccctgttc 66  Q
    |||||||||||||||||| |||| |||||||||| |||||| |||||    
T  19182776 atatgtctgcccctagttcaaaagtattgatacatatgcccttgttc 19182822  T

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