View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0733_low_4 (Length: 686)
Name: NF0733_low_4
Description: NF0733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0733_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 498; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 498; E-Value: 0
Query Start/End: Original strand, 99 - 659
Target Start/End: Original strand, 23553439 - 23553997
Alignment:
| Q |
99 |
tacctctttgttattctataagtgtggttatatagcttctgctacatagataatgtcattcgcttacaatcaacctttgccgacgatgcataactcttca |
198 |
Q |
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| T |
23553439 |
tacctctttgttattctataagtgtggttatatagcttctgctacatagataatgtcattcgcttacaatcaacctttgccgacgatgcataactcttca |
23553538 |
T |
|
| Q |
199 |
aactaaaatgatctttcaaatggcatggccatcgaccgatttgaacgcttagctcaaacaacggtgtgaactgtcacacacatggattttaaccacggca |
298 |
Q |
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| T |
23553539 |
aactaaaatgctttttcaaatggcatggccatcggccgatttgaacgcttagctcaaacaacggtgtgaactgtcacacacatggattttaaccaccgca |
23553638 |
T |
|
| Q |
299 |
cacggagatttcaaccacgacaaactctgaaatcttaaccatcgcacacgctgcacgctgatcttgactttaatcggagttgtaaacacacacgacgcat |
398 |
Q |
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| T |
23553639 |
cacggagatttcaaccacgacaaactctgaaatcttaaccatcgcacacgctgcacgctgatcttgacttaaatcggtgttgtaaacacacacgacgcat |
23553738 |
T |
|
| Q |
399 |
actaatttgtggtttcatatgccaatttgtaactccaagcgccacaagctcgaagttgttcatgtccttttctctgaactgtgagttttatgtaggtttt |
498 |
Q |
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| T |
23553739 |
tctaatttgtggtttcatatgccaatttgtaactccaagcgccacaagctcgaagttgttcatgtcc--ttctctgaactgtgagttttatgtaggtttt |
23553836 |
T |
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| Q |
499 |
gttcgttaagttttaggttctgtgttcagctgaattcgatgatgaattcctctgttgcaatgtcttataggtttatgatcgatgattggcttgtttttta |
598 |
Q |
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| T |
23553837 |
gttcattaagttttaggttctgtgttctgctgaattcgatgatgaattcgtctgttacaatgtcttataggtttatgatcgatgattggcttgtctttta |
23553936 |
T |
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| Q |
599 |
ttgaatccttcgttaattgaatgtgcaattgtggtattaattttactaatacaacttcttg |
659 |
Q |
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| T |
23553937 |
ttgaatccttcgttaattgaatgtgcaattgtggtgttaattttactaatacaacttcttg |
23553997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 523 - 586
Target Start/End: Original strand, 23306511 - 23306574
Alignment:
| Q |
523 |
ttcagctgaattcgatgatgaattcctctgttgcaatgtcttataggtttatgatcgatgattg |
586 |
Q |
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| T |
23306511 |
ttcagctgcattcgatgatgaatccctctgcttccatgtcttataggtttatgatcgatgattg |
23306574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 584 - 660
Target Start/End: Original strand, 23306593 - 23306669
Alignment:
| Q |
584 |
ttggcttgttttttattgaatccttcgttaattgaatgtgcaattgtggtattaattttactaatacaacttcttga |
660 |
Q |
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| T |
23306593 |
ttggcttgtctttgatcgaatccttcatgaatttgatgtgcaattatggtattaattttactaatccaacttcttga |
23306669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 477 - 520
Target Start/End: Original strand, 23306392 - 23306435
Alignment:
| Q |
477 |
ctgtgagttttatgtaggttttgttcgttaagttttaggttctg |
520 |
Q |
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| T |
23306392 |
ctgtgagtttgatgtaggctttgttggttaagttttaggttctg |
23306435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 275 - 360
Target Start/End: Original strand, 23306235 - 23306321
Alignment:
| Q |
275 |
cacacatggattttaaccacggcacacggagatttcaaccacgacaaa--ctctgaaatcttaaccatcgcacacgctgcacgctgat |
360 |
Q |
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| T |
23306235 |
cacacatgaattttaaccacc-cacacgtcaatttcaaccaccacacatactctgaaatcttagccatcgaacacgctgcacactgat |
23306321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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