View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0733_low_41 (Length: 365)

Name: NF0733_low_41
Description: NF0733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0733_low_41
NF0733_low_41
[»] chr4 (10 HSPs)
chr4 (148-337)||(9750520-9750709)
chr4 (29-151)||(9760083-9760205)
chr4 (230-315)||(21166555-21166640)
chr4 (198-307)||(9739960-9740069)
chr4 (264-341)||(19335316-19335393)
chr4 (226-316)||(17380925-17381015)
chr4 (27-84)||(13764497-13764554)
chr4 (194-304)||(17661905-17662016)
chr4 (24-66)||(22057553-22057595)
chr4 (230-310)||(7613681-7613761)
[»] chr7 (14 HSPs)
chr7 (194-324)||(2505774-2505904)
chr7 (194-309)||(17887766-17887881)
chr7 (201-307)||(21228408-21228514)
chr7 (201-299)||(21229051-21229149)
chr7 (251-305)||(12865159-12865214)
chr7 (264-307)||(16799156-16799199)
chr7 (264-306)||(1280399-1280441)
chr7 (268-309)||(1465404-1465445)
chr7 (194-307)||(10479431-10479546)
chr7 (194-285)||(26133236-26133328)
chr7 (28-78)||(15867677-15867727)
chr7 (266-307)||(14968727-14968768)
chr7 (266-307)||(15398203-15398244)
chr7 (264-305)||(21546450-21546491)
[»] chr3 (8 HSPs)
chr3 (194-315)||(51118517-51118639)
chr3 (194-308)||(25530767-25530881)
chr3 (194-241)||(3462100-3462147)
chr3 (203-339)||(20290470-20290606)
chr3 (230-307)||(30510771-30510848)
chr3 (251-325)||(3002986-3003060)
chr3 (230-307)||(7487477-7487554)
chr3 (30-75)||(36658525-36658570)
[»] chr8 (7 HSPs)
chr8 (194-315)||(20268329-20268450)
chr8 (194-315)||(21054958-21055079)
chr8 (230-303)||(27305669-27305742)
chr8 (194-307)||(33983061-33983174)
chr8 (233-299)||(17970468-17970534)
chr8 (194-292)||(26613776-26613874)
chr8 (263-308)||(12656308-12656353)
[»] chr1 (6 HSPs)
chr1 (194-309)||(10828459-10828574)
chr1 (194-307)||(34104866-34104979)
chr1 (235-307)||(21448734-21448806)
chr1 (194-308)||(27912012-27912125)
chr1 (201-307)||(31260668-31260776)
chr1 (194-308)||(21536942-21537056)
[»] chr5 (8 HSPs)
chr5 (194-307)||(32415866-32415979)
chr5 (198-310)||(28280227-28280339)
chr5 (194-309)||(23032611-23032726)
chr5 (204-341)||(20680493-20680631)
chr5 (35-74)||(7187442-7187481)
chr5 (235-309)||(20102969-20103043)
chr5 (264-325)||(26456045-26456106)
chr5 (49-85)||(463013-463049)
[»] chr2 (5 HSPs)
chr2 (194-293)||(42153596-42153695)
chr2 (266-301)||(27747651-27747686)
chr2 (25-72)||(34257107-34257154)
chr2 (194-292)||(16042699-16042797)
chr2 (230-307)||(19104003-19104080)
[»] chr6 (7 HSPs)
chr6 (246-308)||(20404100-20404162)
chr6 (202-308)||(34395402-34395507)
chr6 (264-341)||(15550969-15551046)
chr6 (199-307)||(12585860-12585967)
chr6 (198-271)||(20723570-20723643)
chr6 (25-76)||(24084883-24084934)
chr6 (262-307)||(17358397-17358442)
[»] scaffold0059 (1 HSPs)
scaffold0059 (194-307)||(63984-64097)
[»] scaffold0468 (1 HSPs)
scaffold0468 (193-325)||(2225-2357)
[»] scaffold0340 (1 HSPs)
scaffold0340 (230-307)||(16883-16960)
[»] scaffold0321 (1 HSPs)
scaffold0321 (46-78)||(18747-18779)


Alignment Details
Target: chr4 (Bit Score: 146; Significance: 8e-77; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 148 - 337
Target Start/End: Complemental strand, 9750709 - 9750520
Alignment:
Q  148 atggggttgtagaataaggttttagttttgcttgtgttagatccactttcagtcatttttatttagttttaattcaagataaaggagttttagaaaaact 247  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  9750709 atggggttgtagaagaaggttttagttttgcttgtgttagatccactttcagtcatatttatttagttttaattcaagataaaggagttttagaaaaact 9750610  T
Q  248 gcatatggttttcagaacattttgtaatgttttcatttcgagtcatttaattctagtttttctgaaacttagtaattccaagttgttttt 337  Q
    ||||||| || ||| || |||||||||||||||||||||||||||| ||||| ||||||| ||||||| ||||||||||||| |||||||    
T  9750609 gcatatgattgtcataatattttgtaatgttttcatttcgagtcatctaattttagttttcctgaaacctagtaattccaaggtgttttt 9750520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 29 - 151
Target Start/End: Complemental strand, 9760205 - 9760083
Alignment:
Q  29 cttaaatgcattattgacctcttaacttttaaaaagttacgattttgaccatctaacnnnnnnntaacaatttcaccctctatatttagaaaaatatgtt 128  Q
    |||||||||||| |||||||||||| ||||||||| |||||||||||| ||||||||       ||||||||||||| ||||||||||| ||||||||||    
T  9760205 cttaaatgcatttttgacctcttaaattttaaaaaattacgattttgaacatctaacaaaaaaataacaatttcaccatctatatttaggaaaatatgtt 9760106  T
Q  129 cttttgaccctttatctatatgg 151  Q
    |||||||||||||||||||||||    
T  9760105 cttttgaccctttatctatatgg 9760083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 230 - 315
Target Start/End: Original strand, 21166555 - 21166640
Alignment:
Q  230 aggagttttagaaaaactgcatatggttttcagaacattttgtaatgttttcatttcgagtcatttaattctagtttttctgaaac 315  Q
    |||||||||||||||| |||||||| ||| ||  |||||||||||| |||||||||||||| || |||||||||||||||||||||    
T  21166555 aggagttttagaaaaattgcatatgatttacatgacattttgtaatattttcatttcgagtaatgtaattctagtttttctgaaac 21166640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 198 - 307
Target Start/End: Original strand, 9739960 - 9740069
Alignment:
Q  198 agtcatttttatttagttttaattcaagataaaggagttttagaaaaactgcatatggttttcagaacattttgtaatgttttcatttcgagtcatttaa 297  Q
    |||||||||||||||||||| ||  ||  || ||||||||||||| || |||||||| ||||  | |  |||||||||||||| |||||||||||| |||    
T  9739960 agtcatttttatttagttttgatctaaattagaggagttttagaacaattgcatatgatttttgggatgttttgtaatgtttttatttcgagtcatgtaa 9740059  T
Q  298 ttctagtttt 307  Q
    ||||||||||    
T  9740060 ttctagtttt 9740069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 264 - 341
Target Start/End: Original strand, 19335316 - 19335393
Alignment:
Q  264 acattttgtaatgttttcatttcgagtcatttaattctagtttttctgaaacttagtaattccaagttgtttttgatg 341  Q
    |||||||||||||||||||||||||||||| |||||||||| || || ||||  || |||| |||| |||||||||||    
T  19335316 acattttgtaatgttttcatttcgagtcatgtaattctagtcttcctaaaaccgagcaatttcaaggtgtttttgatg 19335393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 226 - 316
Target Start/End: Complemental strand, 17381015 - 17380925
Alignment:
Q  226 ataaaggagttttagaaaaactgcatatggttttcagaacattttgtaatgttttcatttcgagtcatttaattctagtttttctgaaact 316  Q
    |||||||||||||| || |||| | |||||||||  | | ||||||| ||||||||||||||||||||  |||||||||||| | ||||||    
T  17381015 ataaaggagttttaaaacaacttcctatggtttttgggatattttgtgatgttttcatttcgagtcatgcaattctagttttcccgaaact 17380925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 27 - 84
Target Start/End: Complemental strand, 13764554 - 13764497
Alignment:
Q  27 ggcttaaatgcattattgacctcttaacttttaaaaagttacgattttgaccatctaa 84  Q
    ||||||||| |||| || ||||||||||||||||||||||  |||||||||| |||||    
T  13764554 ggcttaaatacattgttaacctcttaacttttaaaaagttgtgattttgaccctctaa 13764497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 304
Target Start/End: Complemental strand, 17662016 - 17661905
Alignment:
Q  194 tttcagtcattttt-atttagttttaattcaagataaaggagttttagaaaaactgcatatggttttcagaacattttgtaatg-ttttcatttcgagtc 291  Q
    |||||||||||||| ||||||||||||| ||| |||||||||| |||||| ||  || |||| |||||   ||||||  ||||| ||||||||| |||||    
T  17662016 tttcagtcattttttatttagttttaatccaaaataaaggagtattagaacaatcgcctatgattttctcgacatttcataatgtttttcattt-gagtc 17661918  T
Q  292 atttaattctagt 304  Q
    || ||||||||||    
T  17661917 atgtaattctagt 17661905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 66
Target Start/End: Complemental strand, 22057595 - 22057553
Alignment:
Q  24 ataggcttaaatgcattattgacctcttaacttttaaaaagtt 66  Q
    ||||||||||||| ||| || ||||||||||||||||||||||    
T  22057595 ataggcttaaatgtattttttacctcttaacttttaaaaagtt 22057553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 310
Target Start/End: Complemental strand, 7613761 - 7613681
Alignment:
Q  230 aggagttttagaaaaactgcatatggttttcagaacattttgtaatgttttcatttcgagtcatttaattctagtttttct 310  Q
    |||||| |||||| || |||||||||| |||   | ||||||||||||||||  || |||| || ||||||||||||||||    
T  7613761 aggagtattagaacaattgcatatggtcttcgagatattttgtaatgttttctatttgagttatgtaattctagtttttct 7613681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 3e-27; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 194 - 324
Target Start/End: Complemental strand, 2505904 - 2505774
Alignment:
Q  194 tttcagtcatttttatttagttttaattcaagataaaggagttttagaaaaactgcatatggttttcagaacattttgtaatgttttcatttcgagtcat 293  Q
    |||||||||||||||||||||||  || ||| ||| ||||||||||||| || ||  |||||||||| |||||||||| ||||||||| |||||||||||    
T  2505904 tttcagtcatttttatttagtttcgatccaaaatagaggagttttagaacaattgtctatggttttcggaacattttgcaatgttttcttttcgagtcat 2505805  T
Q  294 ttaattctagtttttctgaaacttagtaatt 324  Q
     ||||||||||||| | ||||| ||| ||||    
T  2505804 gtaattctagttttcccgaaacatagcaatt 2505774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 194 - 309
Target Start/End: Original strand, 17887766 - 17887881
Alignment:
Q  194 tttcagtcatttttatttagttttaattcaagataaaggagttttagaaaaactgcatatggttttcagaacattttgtaatgttttcatttcgagtcat 293  Q
    ||||||||||||||| |||||||| || ||||||| |||||||||||| ||| ||| |||||||||  | |||||||||||||||||||||| |||||||    
T  17887766 tttcagtcatttttagttagttttgatccaagatagaggagttttagagaaattgcctatggttttagggacattttgtaatgttttcattttgagtcat 17887865  T
Q  294 ttaattctagtttttc 309  Q
     ||||| || ||||||    
T  17887866 gtaattgtactttttc 17887881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 201 - 307
Target Start/End: Complemental strand, 21228514 - 21228408
Alignment:
Q  201 catttttatttagttttaattcaagataaaggagttttagaaaaactgcatatggttttcagaacattttgtaatgttttcatttcgagtcatttaattc 300  Q
    ||||||||||||||||| || |||| || ||||||||||||  || ||| |||||||||  | ||||||| ||||||||||||||||| |||| |||||     
T  21228514 catttttatttagttttgatccaagttacaggagttttagagcaattgcctatggtttttgggacattttttaatgttttcatttcgaatcatgtaatta 21228415  T
Q  301 tagtttt 307  Q
    |||||||    
T  21228414 tagtttt 21228408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 201 - 299
Target Start/End: Complemental strand, 21229149 - 21229051
Alignment:
Q  201 catttttatttagttttaattcaagataaaggagttttagaaaaactgcatatggttttcagaacattttgtaatgttttcatttcgagtcatttaatt 299  Q
    ||||||||||||||||| || |||| || ||||||||||||  || ||| |||||||||  | ||||||| ||||||||||||||||| |||| |||||    
T  21229149 catttttatttagttttgatccaagttacaggagttttagagcaattgcctatggtttttgggacattttttaatgttttcatttcgaatcatgtaatt 21229051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 251 - 305
Target Start/End: Complemental strand, 12865214 - 12865159
Alignment:
Q  251 tatggttttcaga-acattttgtaatgttttcatttcgagtcatttaattctagtt 305  Q
    ||||||||| ||| |||||||||||||||||||| ||||||||| |||||||||||    
T  12865214 tatggttttaagagacattttgtaatgttttcatatcgagtcatgtaattctagtt 12865159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 264 - 307
Target Start/End: Original strand, 16799156 - 16799199
Alignment:
Q  264 acattttgtaatgttttcatttcgagtcatttaattctagtttt 307  Q
    ||||||||||||||||||||||||| |||| |||||||||||||    
T  16799156 acattttgtaatgttttcatttcgaatcatgtaattctagtttt 16799199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 264 - 306
Target Start/End: Complemental strand, 1280441 - 1280399
Alignment:
Q  264 acattttgtaatgttttcatttcgagtcatttaattctagttt 306  Q
    |||||||||| ||||||||||||||||||| ||||||||||||    
T  1280441 acattttgtattgttttcatttcgagtcatgtaattctagttt 1280399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 268 - 309
Target Start/End: Complemental strand, 1465445 - 1465404
Alignment:
Q  268 tttgtaatgttttcatttcgagtcatttaattctagtttttc 309  Q
    |||||||||||||||||||||||||| ||||| |||||||||    
T  1465445 tttgtaatgttttcatttcgagtcatgtaattatagtttttc 1465404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 307
Target Start/End: Original strand, 10479431 - 10479546
Alignment:
Q  194 tttcagtcatttttatttagttttaattcaagataaaggagttttagaaaaactg--catatggttttcagaacattttgtaatgttttcatttcgagtc 291  Q
    ||||||||||||||||||||||| |||||||  || ||||||||||||   | ||   || |  |||| || | ||||||||||||||||||||| ||||    
T  10479431 tttcagtcatttttatttagtttaaattcaaattagaggagttttagagcgattgttgatgttttttttaggatattttgtaatgttttcatttcaagtc 10479530  T
Q  292 atttaattctagtttt 307  Q
    || ||||| |||||||    
T  10479531 atgtaattttagtttt 10479546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 285
Target Start/End: Original strand, 26133236 - 26133328
Alignment:
Q  194 tttcagtcatttttattt-agttttaattcaagataaaggagttttagaaaaactgcatatggttttcagaacattttgtaatgttttcattt 285  Q
    ||||| |||||||| ||| |||||| ||  ||| || ||||| ||||||| || ||  |||||||||||| ||||||||||||||||||||||    
T  26133236 tttcaatcatttttttttcagttttgatcaaagttataggagatttagaagaattgactatggttttcaggacattttgtaatgttttcattt 26133328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 78
Target Start/End: Complemental strand, 15867727 - 15867677
Alignment:
Q  28 gcttaaatgcattattgacctcttaacttttaaaaagttacgattttgacc 78  Q
    ||||||||||||| |  ||||||||||||||||||||||  ||||||||||    
T  15867727 gcttaaatgcattttccacctcttaacttttaaaaagttgtgattttgacc 15867677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 307
Target Start/End: Original strand, 14968727 - 14968768
Alignment:
Q  266 attttgtaatgttttcatttcgagtcatttaattctagtttt 307  Q
    ||||||||||||||| |||||||||||| |||||| ||||||    
T  14968727 attttgtaatgtttttatttcgagtcatgtaattcgagtttt 14968768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 307
Target Start/End: Original strand, 15398203 - 15398244
Alignment:
Q  266 attttgtaatgttttcatttcgagtcatttaattctagtttt 307  Q
    ||||||||||||||| |||||||||||| |||||| ||||||    
T  15398203 attttgtaatgtttttatttcgagtcatgtaattcgagtttt 15398244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 305
Target Start/End: Complemental strand, 21546491 - 21546450
Alignment:
Q  264 acattttgtaatgttttcatttcgagtcatttaattctagtt 305  Q
    |||||||||||||||||||| || |||||| |||||||||||    
T  21546491 acattttgtaatgttttcatatcaagtcatgtaattctagtt 21546450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 6e-25; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 194 - 315
Target Start/End: Original strand, 51118517 - 51118639
Alignment:
Q  194 tttcagtcatttttatttagttttaattcaagat-aaaggagttttagaaaaactgcatatggttttcagaacattttgtaatgttttcatttcgagtca 292  Q
    |||||||||||||||||||||||| || ||| || ||||||||||||||| || ||| |||||||||| | |  | |||||||||||||||||||| |||    
T  51118517 tttcagtcatttttatttagttttgatccaaaattaaaggagttttagaacaattgcctatggttttcgggaattattgtaatgttttcatttcgaatca 51118616  T
Q  293 tttaattctagtttttctgaaac 315  Q
    | ||||||||||||| |||||||    
T  51118617 tgtaattctagttttcctgaaac 51118639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 194 - 308
Target Start/End: Original strand, 25530767 - 25530881
Alignment:
Q  194 tttcagtcatttttatttagttttaattcaagataaaggagttttagaaaaactgcatatggttttcagaacattttgtaatgttttcatttcgagtcat 293  Q
    ||||||||||||||||||||||||||| ||| ||| |||||| |||||| ||||   ||| |||||  | ||||||| || || ||||  || |||||||    
T  25530767 tttcagtcatttttatttagttttaatccaaaatagaggagtattagaacaactatttatagtttttgggacattttttagtgctttctatttgagtcat 25530866  T
Q  294 ttaattctagttttt 308  Q
     ||||||||||||||    
T  25530867 ataattctagttttt 25530881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 194 - 241
Target Start/End: Original strand, 3462100 - 3462147
Alignment:
Q  194 tttcagtcatttttatttagttttaattcaagataaaggagttttaga 241  Q
    ||||||||||||||||||||||| | |||||||||||||| |||||||    
T  3462100 tttcagtcatttttatttagtttaatttcaagataaaggaattttaga 3462147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 203 - 339
Target Start/End: Original strand, 20290470 - 20290606
Alignment:
Q  203 tttttatttagttttaattcaagataaaggagttttagaaaaactgcatatggttttcagaacattttgtaatgttttcatttcgagtc-atttaattct 301  Q
    ||||||||||| ||| || ||||||  | ||||||||||| |||||| |||| ||||  ||  |||||||||||||||||||||| ||| || |||||      
T  20290470 tttttatttaggtttgatccaagattgaagagttttagaacaactgcctatgatttttggat-attttgtaatgttttcatttcgtgtcaatgtaattaa 20290568  T
Q  302 agtttttctgaaacttagtaattccaagttgtttttga 339  Q
    |||||| | ||||| ||  ||||||||| |||||||||    
T  20290569 agttttcccgaaacctaacaattccaagatgtttttga 20290606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 230 - 307
Target Start/End: Complemental strand, 30510848 - 30510771
Alignment:
Q  230 aggagttttagaaaaactgcatatggttttcagaacattttgtaatgttttcatttcgagtcatttaattctagtttt 307  Q
    ||||||||||||| || ||  |||||||| | | |||||||||||||||||||||| || |||| ||||| |||||||    
T  30510848 aggagttttagaataattgtttatggtttgcgggacattttgtaatgttttcattttgaatcatgtaattttagtttt 30510771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 251 - 325
Target Start/End: Complemental strand, 3003060 - 3002986
Alignment:
Q  251 tatggttttcagaacattttgtaatgttttcatttcgagtcatttaattctagtttttctgaaacttagtaattc 325  Q
    |||| ||||||| | ||||||||||||||||  || ||||||| |||||||| |||| ||||||| ||| |||||    
T  3003060 tatgattttcaggatattttgtaatgttttctatttgagtcatgtaattctacttttcctgaaacatagcaattc 3002986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 307
Target Start/End: Original strand, 7487477 - 7487554
Alignment:
Q  230 aggagttttagaaaaactgcatatggttttcagaacattttgtaatgttttcatttcgagtcatttaattctagtttt 307  Q
    |||||||||| || || |||||||| |||   | ||||||  |||||||||| ||||||||||| |||||||||||||    
T  7487477 aggagttttataacaattgcatatgatttaagggacatttcataatgttttcgtttcgagtcatgtaattctagtttt 7487554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 75
Target Start/End: Original strand, 36658525 - 36658570
Alignment:
Q  30 ttaaatgcattattgacctcttaacttttaaaaagttacgattttg 75  Q
    ||||||| ||| |||||| ||||||||||||||| |||||||||||    
T  36658525 ttaaatgtatttttgaccccttaacttttaaaaaattacgattttg 36658570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 6e-22; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 194 - 315
Target Start/End: Complemental strand, 20268450 - 20268329
Alignment:
Q  194 tttcagtcatttttatttagttttaattcaagataaaggagttttagaaaaactgcatatggttttcagaacattttgtaatgttttcatttcgagtcat 293  Q
    ||||| |||||||||||| ||||| ||  |  ||| ||||||||||||| || ||  |||||||||| ||| ||||||||||||||||||||||||||||    
T  20268450 tttcaatcatttttatttggttttgatctataatagaggagttttagaacaattggttatggttttcggaatattttgtaatgttttcatttcgagtcat 20268351  T
Q  294 ttaattctagtttttctgaaac 315  Q
     ||||||||||||  |||||||    
T  20268350 gtaattctagtttccctgaaac 20268329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 194 - 315
Target Start/End: Complemental strand, 21055079 - 21054958
Alignment:
Q  194 tttcagtcatttttatttagttttaattcaagataaaggagttttagaaaaactgcatatggttttcagaacattttgtaatgttttcatttcgagtcat 293  Q
    ||||| |||||||||||| ||||| ||  |  ||| ||||||||||||| || ||  |||||||||| ||| ||||||||||||||||||||||||||||    
T  21055079 tttcaatcatttttatttggttttgatctataatagaggagttttagaacaattggttatggttttcggaatattttgtaatgttttcatttcgagtcat 21054980  T
Q  294 ttaattctagtttttctgaaac 315  Q
     ||||||||||||  |||||||    
T  21054979 gtaattctagtttccctgaaac 21054958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 230 - 303
Target Start/End: Complemental strand, 27305742 - 27305669
Alignment:
Q  230 aggagttttagaaaaactgcatatggttttcagaacattttgtaatgttttcatttcgagtcatttaattctag 303  Q
    ||||||||||| |||| ||  ||||||||||||||||||||||||| ||||||||||||||||| |||||||||    
T  27305742 aggagttttagtaaaaatgtctatggttttcagaacattttgtaatattttcatttcgagtcatgtaattctag 27305669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 194 - 307
Target Start/End: Complemental strand, 33983174 - 33983061
Alignment:
Q  194 tttcagtcatttttatttagttttaattcaagataaaggagttttagaaaaactgcatatggttttcagaacattttgtaatgttttcatttcgagtcat 293  Q
    |||| |||||||||||||| |||| ||  ||| |  ||||||||||||  ||  || |||||||||| |||||||||||||| ||||||||| |||| ||    
T  33983174 tttcggtcatttttatttacttttgatctaagttgtaggagttttagatcaatagcctatggttttcggaacattttgtaatattttcattttgagtaat 33983075  T
Q  294 ttaattctagtttt 307  Q
      ||||||| ||||    
T  33983074 gcaattctaatttt 33983061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 299
Target Start/End: Complemental strand, 17970534 - 17970468
Alignment:
Q  233 agttttagaaaaactgcatatggttttcagaacattttgtaatgttttcatttcgagtcatttaatt 299  Q
    |||||||||| || ||| | ||||||||||||  |||| |||||||||||||| ||||||| |||||    
T  17970534 agttttagaacaattgcttctggttttcagaatcttttttaatgttttcattttgagtcatgtaatt 17970468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 194 - 292
Target Start/End: Original strand, 26613776 - 26613874
Alignment:
Q  194 tttcagtcatttttatttagttttaattcaagataaaggagttttagaaaaactgcatatggttttcagaacattttgtaatgttttcatttcgagtca 292  Q
    |||||||||||||||||||||||| ||  ||  || |||| |||||||| || ||| |||||| ||  | | |||||||||| |||||||||| |||||    
T  26613776 tttcagtcatttttatttagttttcatctaaattagaggaattttagaataattgcctatggtatttgggaaattttgtaattttttcatttctagtca 26613874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 308
Target Start/End: Original strand, 12656308 - 12656353
Alignment:
Q  263 aacattttgtaatgttttcatttcgagtcatttaattctagttttt 308  Q
    ||||||||||||||||||| ||||||||| | ||||||||| ||||    
T  12656308 aacattttgtaatgttttcttttcgagtcgtgtaattctagctttt 12656353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 9e-21; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 194 - 309
Target Start/End: Complemental strand, 10828574 - 10828459
Alignment:
Q  194 tttcagtcatttttatttagttttaattcaagataaaggagttttagaaaaactgcatatggttttcagaacattttgtaatgttttcatttcgagtcat 293  Q
    |||||||||||||  || |||||| ||||||  ||  |||||||||||| || ||||||||||||  || ||||||||||||||||||||||||||||||    
T  10828574 tttcagtcattttacttaagtttttattcaaattattggagttttagaacaattgcatatggtttaaaggacattttgtaatgttttcatttcgagtcat 10828475  T
Q  294 ttaattctagtttttc 309  Q
      ||||| ||||||||    
T  10828474 gcaattcaagtttttc 10828459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 194 - 307
Target Start/End: Complemental strand, 34104979 - 34104866
Alignment:
Q  194 tttcagtcatttttatttagttttaattcaagataaaggagttttagaaaaactgcatatggttttcagaacattttgtaatgttttcatttcgagtcat 293  Q
    ||||| ||||||||||||| |||| || |||| ||  ||| || || || || ||||| ||||||||||||||||||||||| ||||||||| |||||||    
T  34104979 tttcaatcatttttatttaattttgatccaagttaggggaattataaaacaattgcatgtggttttcagaacattttgtaatattttcattttgagtcat 34104880  T
Q  294 ttaattctagtttt 307  Q
      ||||||||||||    
T  34104879 gcaattctagtttt 34104866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 235 - 307
Target Start/End: Original strand, 21448734 - 21448806
Alignment:
Q  235 ttttagaaaaactgcatatggttttcagaacattttgtaatgttttcatttcgagtcatttaattctagtttt 307  Q
    |||||||| || ||| |||| ||||| | |||||||||||||||||||||| ||||||| |||||||||||||    
T  21448734 ttttagaacaattgcctatgattttcgggacattttgtaatgttttcattttgagtcatgtaattctagtttt 21448806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 194 - 308
Target Start/End: Complemental strand, 27912125 - 27912012
Alignment:
Q  194 tttcagtcattttt-atttagttttaattcaagataaaggagttttagaaaaactgcatatggttttcagaacattttgtaatgttttcatttcgagtca 292  Q
    |||||||||||||| ||||||||||||| ||| ||| |||||| |||||| || ||  |||| ||||||| |||||||||||||||| |  || ||||||    
T  27912125 tttcagtcattttttatttagttttaatccaaaatagaggagtattagaacaattgtctatgattttcaggacattttgtaatgtttgctatttgagtca 27912026  T
Q  293 tttaattctagttttt 308  Q
      ||||||||||||||    
T  27912025 --taattctagttttt 27912012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 201 - 307
Target Start/End: Original strand, 31260668 - 31260776
Alignment:
Q  201 catttttatttag-ttttaattcaagataaaggagttttagaaaaactgcatatggttttc-agaacattttgtaatgttttcatttcgagtcatttaat 298  Q
    ||||||||||||  |||| || ||||||| ||||||||||||  || ||| |||  ||||| ||||||||||||||||||||||| |||| |||| ||||    
T  31260668 catttttatttaaattttgatccaagatagaggagttttagagcaattgcctatttttttccagaacattttgtaatgttttcatatcgattcatgtaat 31260767  T
Q  299 tctagtttt 307  Q
    | |||||||    
T  31260768 tatagtttt 31260776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 308
Target Start/End: Original strand, 21536942 - 21537056
Alignment:
Q  194 tttcagtcatttttatttagttttaattcaagataaaggagttttagaaaaactgcatatggttttcagaacattttgtaatgttttcatttcgagtcat 293  Q
    ||||||||||||||| |||||||| || |||  || |||||||||| || || ||| | || ||||  | ||||||||| || |||| |||| |||||||    
T  21536942 tttcagtcatttttagttagttttgatccaaattataggagttttaaaacaattgcctgtgatttttgggacattttgtgatctttttattttgagtcat 21537041  T
Q  294 ttaattctagttttt 308  Q
     ||||||||||||||    
T  21537042 gtaattctagttttt 21537056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 194 - 307
Target Start/End: Original strand, 32415866 - 32415979
Alignment:
Q  194 tttcagtcatttttatttagttttaattcaagataaaggagttttagaaaaactgcatatggttttcagaacattttgtaatgttttcatttcgagtcat 293  Q
    ||||||| ||||||||| || ||| || |||| || ||||||||||||| || | | |||||||||  | ||||||||||||||||||||||| ||||||    
T  32415866 tttcagtaatttttattcagcttttatccaagttacaggagttttagaacaatttcctatggtttttgggacattttgtaatgttttcatttcaagtcat 32415965  T
Q  294 ttaattctagtttt 307  Q
     |||||||||||||    
T  32415966 gtaattctagtttt 32415979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 198 - 310
Target Start/End: Complemental strand, 28280339 - 28280227
Alignment:
Q  198 agtcatttttatttagttttaattcaagataaaggagttttagaaaaactgcatatggttttcagaacattttgtaatgttttcatttcgagtcatttaa 297  Q
    ||||||||||||||||||||||| ||| ||| |||||| |||||| || ||  |||||||||  | |||||||||||||||||   || |||| || |||    
T  28280339 agtcatttttatttagttttaatccaaaatagaggagtattagaacaattgtctatggtttttgggacattttgtaatgttttatatttgagttatgtaa 28280240  T
Q  298 ttctagtttttct 310  Q
    || ||||||||||    
T  28280239 ttatagtttttct 28280227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 194 - 309
Target Start/End: Complemental strand, 23032726 - 23032611
Alignment:
Q  194 tttcagtcatttttatttagttttaattcaagataaaggagttttagaaaaactgcatatggttttcagaacattttgtaatgttttcatttcgagtcat 293  Q
    ||||| |||||||||||||||||| ||  ||  || ||||||||||||  || ||  ||||||||||   ||||||||||||  ||||||||| | ||||    
T  23032726 tttcaatcatttttatttagttttgatctaaactagaggagttttagagcaattgactatggttttcgagacattttgtaattctttcatttcaattcat 23032627  T
Q  294 ttaattctagtttttc 309  Q
     |||||||||||||||    
T  23032626 gtaattctagtttttc 23032611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 204 - 341
Target Start/End: Complemental strand, 20680631 - 20680493
Alignment:
Q  204 ttttatttag-ttttaattcaagataaaggagttttagaaaaactgcatatggttttcagaacattttgtaatgttttcatttcgagtcatttaattcta 302  Q
    |||||||||| ||||||| |||  || |||| ||||||||||| ||| |||  ||||| | | |||||||||| |||| |||||||||||| |||| ||     
T  20680631 ttttatttagattttaatccaatttagaggaattttagaaaaattgcctatctttttcgggatattttgtaatttttttatttcgagtcatgtaatcctt 20680532  T
Q  303 gtttttctgaaacttagtaattccaagttgtttttgatg 341  Q
    ||||||| |||||   ||| ||| ||| |||||||||||    
T  20680531 gtttttcggaaacaatgtagttctaaggtgtttttgatg 20680493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 35 - 74
Target Start/End: Complemental strand, 7187481 - 7187442
Alignment:
Q  35 tgcattattgacctcttaacttttaaaaagttacgatttt 74  Q
    |||||||||||| ||||||||||||||||||| |||||||    
T  7187481 tgcattattgacatcttaacttttaaaaagttgcgatttt 7187442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 309
Target Start/End: Original strand, 20102969 - 20103043
Alignment:
Q  235 ttttagaaaaactgcatatggttttcagaacattttgtaatgttttcatttcgagtcatttaattctagtttttc 309  Q
    |||||||| || | ||||||||||   | |||||| ||||||||||||| || |||||| |||||||||||||||    
T  20102969 ttttagaacaatttcatatggtttaagggacatttcgtaatgttttcatatccagtcatgtaattctagtttttc 20103043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 325
Target Start/End: Complemental strand, 26456106 - 26456045
Alignment:
Q  264 acattttgtaatgttttcatttcgagtcatttaattctagtttttctgaaacttagtaattc 325  Q
    |||||||||||||||||||| | |||| || |||||| |||||| |||||||| || |||||    
T  26456106 acattttgtaatgttttcatattgagttatgtaattcaagttttcctgaaactaagcaattc 26456045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 85
Target Start/End: Complemental strand, 463049 - 463013
Alignment:
Q  49 cttaacttttaaaaagttacgattttgaccatctaac 85  Q
    |||||||||||||||||| ||||||||||| ||||||    
T  463049 cttaacttttaaaaagttgcgattttgaccctctaac 463013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 194 - 293
Target Start/End: Complemental strand, 42153695 - 42153596
Alignment:
Q  194 tttcagtcatttttatttagttttaattcaagataaaggagttttagaaaaactgcatatggttttcagaacattttgtaatgttttcatttcgagtcat 293  Q
    ||||||||||||||||||||||||  | |||  || | ||||||||||| || ||| |||||||||| | ||||||| ||||||||||||||||||||||    
T  42153695 tttcagtcatttttatttagttttgttccaaattatatgagttttagaacaattgcctatggttttcgggacattttctaatgttttcatttcgagtcat 42153596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 266 - 301
Target Start/End: Original strand, 27747651 - 27747686
Alignment:
Q  266 attttgtaatgttttcatttcgagtcatttaattct 301  Q
    |||||||||||||||||||||||||||| |||||||    
T  27747651 attttgtaatgttttcatttcgagtcatataattct 27747686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 25 - 72
Target Start/End: Original strand, 34257107 - 34257154
Alignment:
Q  25 taggcttaaatgcattattgacctcttaacttttaaaaagttacgatt 72  Q
    |||||||||||||||| || ||| |||||||||||||||||| |||||    
T  34257107 taggcttaaatgcatttttaaccccttaacttttaaaaagttgcgatt 34257154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 194 - 292
Target Start/End: Original strand, 16042699 - 16042797
Alignment:
Q  194 tttcagtcatttttatttagttttaattcaagataaaggagttttagaaaaactgcatatggttttcagaacattttgtaatgttttcatttcgagtca 292  Q
    ||||| ||||||||||||| |||| || ||| ||| || || ||||||  || | | ||| |||||| | | |||||||||||||||||||||||||||    
T  16042699 tttcaatcatttttatttaattttgatccaaaatagagaagctttagagcaattacctatagttttcgggatattttgtaatgttttcatttcgagtca 16042797  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 307
Target Start/End: Original strand, 19104003 - 19104080
Alignment:
Q  230 aggagttttagaaaaactgcatatggttttcagaacattttgtaatgttttcatttcgagtcatttaattctagtttt 307  Q
    |||| ||||||||||| | | |||| ||||  | ||||||||||||||||| ||||||||| || || ||||||||||    
T  19104003 aggaattttagaaaaattacttatgttttttgggacattttgtaatgtttttatttcgagttatgtatttctagtttt 19104080  T

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Target: chr6 (Bit Score: 47; Significance: 9e-18; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 246 - 308
Target Start/End: Original strand, 20404100 - 20404162
Alignment:
Q  246 ctgcatatggttttcagaacattttgtaatgttttcatttcgagtcatttaattctagttttt 308  Q
    ||||||||||||||||| ||||||||||||| |||||||||||||||| |||||||| |||||    
T  20404100 ctgcatatggttttcaggacattttgtaatgatttcatttcgagtcatgtaattctaattttt 20404162  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 202 - 308
Target Start/End: Original strand, 34395402 - 34395507
Alignment:
Q  202 atttttatttagttttaattcaagataaaggagttttagaaaaactgcatatggttttcagaacattttgtaatgttttcatttcgagtcatttaattct 301  Q
    ||||||||||||||||||| ||| ||| |||||| |||||| || |||||||| ||||||| ||| |||||| |||||||  || |||||   |||||||    
T  34395402 atttttatttagttttaatccaaaatagaggagtattagaacaattgcatatgattttcaggaca-tttgtattgttttctatttgagtcggataattct 34395500  T
Q  302 agttttt 308  Q
    |||||||    
T  34395501 agttttt 34395507  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 264 - 341
Target Start/End: Complemental strand, 15551046 - 15550969
Alignment:
Q  264 acattttgtaatgttttcatttcgagtcatttaattctagtttttctgaaacttagtaattccaagttgtttttgatg 341  Q
    |||| |||||||||||||||||| | |||| |||||||||||||||||||||  || |||||  || |||||||||||    
T  15551046 acatattgtaatgttttcatttcaaatcatgtaattctagtttttctgaaaccaagcaattcttaggtgtttttgatg 15550969  T

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Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 199 - 307
Target Start/End: Original strand, 12585860 - 12585967
Alignment:
Q  199 gtcatttttatttagttttaattcaagataaaggagttttagaaaaactgcatatggttttcagaacattttgtaatgttttcatttcgagtcatttaat 298  Q
    |||||||||||||| |||| || |||| || ||||||||||||| || | | |||  ||||| | ||||||| ||||||||||||||||||||||  |||    
T  12585860 gtcatttttattta-ttttgatccaagttagaggagttttagaagaatttcctatcattttcgggacattttttaatgttttcatttcgagtcatgcaat 12585958  T
Q  299 tctagtttt 307  Q
    ||| |||||    
T  12585959 tcttgtttt 12585967  T

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Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 198 - 271
Target Start/End: Complemental strand, 20723643 - 20723570
Alignment:
Q  198 agtcatttttatttagttttaattcaagataaaggagttttagaaaaactgcatatggttttcagaacattttg 271  Q
    |||||||||||||||||||| || |||| || || |||||||||| || ||||||||||| |  ||||||||||    
T  20723643 agtcatttttatttagtttttatccaagttagagaagttttagaacaattgcatatggttgttggaacattttg 20723570  T

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Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 25 - 76
Target Start/End: Original strand, 24084883 - 24084934
Alignment:
Q  25 taggcttaaatgcattattgacctcttaacttttaaaaagttacgattttga 76  Q
    ||||||||| || ||| ||||| ||||||||||||||||||| |||||||||    
T  24084883 taggcttaagtgtatttttgacatcttaacttttaaaaagttgcgattttga 24084934  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 307
Target Start/End: Original strand, 17358397 - 17358442
Alignment:
Q  262 gaacattttgtaatgttttcatttcgagtcatttaattctagtttt 307  Q
    ||||||| |||||||||||||| | ||||||| |||||||||||||    
T  17358397 gaacattctgtaatgttttcatattgagtcatgtaattctagtttt 17358442  T

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Target: scaffold0059 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 194 - 307
Target Start/End: Original strand, 63984 - 64097
Alignment:
Q  194 tttcagtcatttttatttagttttaattcaagataaaggagttttagaaaaactgcatatggttttcagaacattttgtaatgttttcatttcgagtcat 293  Q
    |||||||||||||||||||||||| || |||  || ||||||||||||| || ||  | |||||||  | ||||||| |||||||||| |||||||||||    
T  63984 tttcagtcatttttatttagttttgatccaaattagaggagttttagaacaattgtctttggtttttgggacattttataatgttttcttttcgagtcat 64083  T
Q  294 ttaattctagtttt 307  Q
     || ||||||||||    
T  64084 gtatttctagtttt 64097  T

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Target: scaffold0468 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0468
Description:

Target: scaffold0468; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 193 - 325
Target Start/End: Complemental strand, 2357 - 2225
Alignment:
Q  193 ctttcagtcatttttatttagttttaattcaagataaaggagttttagaaaaactgcatatggttttcagaacattttgtaatgttttcatttcgagtca 292  Q
    ||||| |||| |||||||||||||| || ||||||| || |||||||||| || ||   | | ||||  | | ||||| |||||||||||||||||||||    
T  2357 ctttcggtcacttttatttagttttgatccaagatagagaagttttagaacaattgtcaacgttttttgggatattttataatgttttcatttcgagtca 2258  T
Q  293 tttaattctagtttttctgaaacttagtaattc 325  Q
    | ||||||||||||| || |||| ||| |||||    
T  2257 tgtaattctagttttccttaaacatagcaattc 2225  T

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Target: scaffold0340 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0340
Description:

Target: scaffold0340; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 230 - 307
Target Start/End: Complemental strand, 16960 - 16883
Alignment:
Q  230 aggagttttagaaaaactgcatatggttttcagaacattttgtaatgttttcatttcgagtcatttaattctagtttt 307  Q
    |||||||||||||||  | | |||||||| ||| | ||||||||||||||||||||||| |||| |||||||| ||||    
T  16960 aggagttttagaaaattttcctatggtttgcaggatattttgtaatgttttcatttcgattcatgtaattctaatttt 16883  T

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Target: scaffold0321 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 46 - 78
Target Start/End: Original strand, 18747 - 18779
Alignment:
Q  46 cctcttaacttttaaaaagttacgattttgacc 78  Q
    ||||||||||||||||||||| |||||||||||    
T  18747 cctcttaacttttaaaaagttgcgattttgacc 18779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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