View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0733_low_42 (Length: 363)
Name: NF0733_low_42
Description: NF0733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0733_low_42 |
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Alignment Details
Target: chr8 (Bit Score: 189; Significance: 1e-102; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 76 - 280
Target Start/End: Original strand, 12962612 - 12962816
Alignment:
| Q |
76 |
atgaattaaatggaaggttagtaacttggagagaagcattagaagtgtatgacttatgcctaagtaggctatgatagacataatgcaattttagtaaaag |
175 |
Q |
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| T |
12962612 |
atgaattaaatggaaggttagtaacttggagagaagcattagaagtgtatgaattatgcctaagtaggctatgatagacataatgcaattttagtaaaag |
12962711 |
T |
|
| Q |
176 |
acaaagcattcttaacttagaggtgaaagtatgagatcatgtggtgccacatgttacacaatttatatattttgggttcatagtacaaaacgacagatat |
275 |
Q |
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| T |
12962712 |
acaaagcattcttaacttagaggtgaaagtatgagatcatgtggtgccacaagttacacaatttatatatcttgggttcatagtacaaaacgacatatat |
12962811 |
T |
|
| Q |
276 |
atata |
280 |
Q |
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||||| |
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| T |
12962812 |
atata |
12962816 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 272 - 331
Target Start/End: Original strand, 12962846 - 12962905
Alignment:
| Q |
272 |
atatatataaaaagagatgtaaacctttaatttaagcggggtggttgaaatagaggcata |
331 |
Q |
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| T |
12962846 |
atatatatataaagagatgtaaacctttaatttaagcggggtggttgaaatagaggcata |
12962905 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 79 - 134
Target Start/End: Complemental strand, 19294039 - 19293984
Alignment:
| Q |
79 |
aattaaatggaaggttagtaacttggagagaagcattagaagtgtatgacttatgc |
134 |
Q |
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| T |
19294039 |
aatttaatggaaggttagggacttggagacaaaccttagaagtgtatgacttatgc |
19293984 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 228 - 272
Target Start/End: Complemental strand, 32066874 - 32066830
Alignment:
| Q |
228 |
gttacacaatttatatattttgggttcatagtacaaaacgacaga |
272 |
Q |
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| T |
32066874 |
gttacacagtttaaatattttgggttcatagtacaaaatgacaga |
32066830 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 196 - 268
Target Start/End: Original strand, 7921574 - 7921646
Alignment:
| Q |
196 |
aggtgaaagtatgagatcatgtggtgccacatgttacacaatttatatattttgggttcatagtacaaaacga |
268 |
Q |
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| T |
7921574 |
aggtgaaagttggagatcatatcttaccacaagttacacgatttatatatcttggatccatagtacaaaacga |
7921646 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 79 - 134
Target Start/End: Complemental strand, 54788004 - 54787949
Alignment:
| Q |
79 |
aattaaatggaaggttagtaacttggagagaagcattagaagtgtatgacttatgc |
134 |
Q |
| |
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|||| ||||||||||||| ||||||||| || | ||||||||||||||||||||| |
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|
| T |
54788004 |
aatttaatggaaggttagggacttggagacaaaccttagaagtgtatgacttatgc |
54787949 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 170 - 269
Target Start/End: Original strand, 46145774 - 46145873
Alignment:
| Q |
170 |
taaaagacaaagcattcttaacttagaggtgaaagtatgagatcatgtggtgccacatgttacacaatttatatattttgggttcatagtacaaaacgac |
269 |
Q |
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|||||| | ||||||| ||||||||||||| ||||| ||||| |||| | ||||| |||| || |||| |||||||| || |||||||||||||||| |
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| T |
46145774 |
taaaaggcgaagcatttttaacttagaggttaaagttggagattatgtcataccacaagttatacggtttaaatattttgagtccatagtacaaaacgac |
46145873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 272
Target Start/End: Original strand, 48221426 - 48221507
Alignment:
| Q |
191 |
cttagaggtgaaagtatgagatcatgtggtgccacatgttacacaatttatatattttgggttcatagtacaaaacgacaga |
272 |
Q |
| |
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||||||||||||||| ||||||| | | ||||| |||||||| |||| |||| |||| |||||||||||||| |||||| |
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| T |
48221426 |
cttagaggtgaaagttgaagatcatatcataccacaagttacacattttaaatatcttggattcatagtacaaaatgacaga |
48221507 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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