View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0733_low_47 (Length: 351)

Name: NF0733_low_47
Description: NF0733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0733_low_47
NF0733_low_47
[»] chr2 (7 HSPs)
chr2 (25-184)||(41524975-41525135)
chr2 (34-186)||(41524793-41524945)
chr2 (93-186)||(41524629-41524722)
chr2 (229-340)||(41524476-41524586)
chr2 (229-340)||(41524645-41524756)
chr2 (229-340)||(41524809-41524930)
chr2 (93-186)||(41524460-41524552)
[»] chr3 (4 HSPs)
chr3 (34-186)||(3175663-3175818)
chr3 (34-186)||(3175846-3176004)
chr3 (21-152)||(3175517-3175648)
chr3 (257-340)||(3175679-3175765)
[»] chr5 (4 HSPs)
chr5 (31-180)||(20964054-20964209)
chr5 (34-172)||(20964243-20964381)
chr5 (256-340)||(20964295-20964379)
chr5 (43-116)||(20963970-20964043)
[»] chr1 (4 HSPs)
chr1 (28-186)||(24541041-24541202)
chr1 (34-180)||(24540867-24541013)
chr1 (256-340)||(24540877-24540961)
chr1 (43-116)||(24541210-24541283)


Alignment Details
Target: chr2 (Bit Score: 121; Significance: 6e-62; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 25 - 184
Target Start/End: Complemental strand, 41525135 - 41524975
Alignment:
Q  25 catcaacatcaacatcattcaccatcccataccccttcacatgttcacactcctttacattctcgtttccctgcaaaa-cgcccaacccatcatcgtcat 123  Q
    ||||| |||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||    
T  41525135 catcagcatcaacatcattcaccatcccctaccccttcgcatgttcacactcctttacattctcgtttccctgcaaaaccccccaacccatcatcgtcat 41525036  T
Q  124 cactctccagctcatgcccctattaagcctccgattcacactcctttacatcctccttacc 184  Q
    ||||||| ||||||||||||||||||||||| | ||||||||||||||||||||| |||||    
T  41525035 cactctctagctcatgcccctattaagcctctggttcacactcctttacatcctctttacc 41524975  T

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Target: chr2; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 34 - 186
Target Start/End: Complemental strand, 41524945 - 41524793
Alignment:
Q  34 caacatcattcaccatcccataccccttcacatgttcacactcctttacattctcgtttccctgcaaaacgcccaacccatcatcgtcatcactctccag 133  Q
    ||||| || |||||||||| | | ||||| |||||||| ||||||||| || |||||  ||||||||||| |||||||||||||||||||||||||||||    
T  41524945 caacaccactcaccatcccctgctccttcccatgttcatactcctttatatcctcgtcaccctgcaaaacccccaacccatcatcgtcatcactctccag 41524846  T
Q  134 ctcatgcccctattaagcctccgattcacactcctttacatcctccttaccct 186  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  41524845 ctcatgcccctattaagcctccggttcacactcctttacatcctccttaccct 41524793  T

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Target: chr2; HSP #3
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 93 - 186
Target Start/End: Complemental strand, 41524722 - 41524629
Alignment:
Q  93 ccctgcaaaacgcccaacccatcatcgtcatcactctccagctcatgcccctattaagcctccgattcacactcctttacatcctccttaccct 186  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  41524722 ccctgcaaaacccccaacccatcatcgtcatcactctccagctcatgcccctattaagcctccggttcacactcctttacatcctccttaccct 41524629  T

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Target: chr2; HSP #4
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 229 - 340
Target Start/End: Complemental strand, 41524586 - 41524476
Alignment:
Q  229 tcccctgctccttcccatgttcatactctcgtcaccctgcaaaacccccaatccattgtcatcgtcactctcctgctcaaacccctattaagcctccggc 328  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| |||||| ||||||||||||||||| |||||||||| |||| |     
T  41524586 tcccctgctccttcccatgttcatactcttgtcaccctgcaaaacccccaacccatcgtcatcatcactctcctgctcaaatccctattaagtctcc-gt 41524488  T
Q  329 tcacacaccttt 340  Q
    ||||||||||||    
T  41524487 tcacacaccttt 41524476  T

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Target: chr2; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 229 - 340
Target Start/End: Complemental strand, 41524756 - 41524645
Alignment:
Q  229 tcccctgctccttcccatgttcatactctcgtcaccctgcaaaacccccaatccattgtcatcgtcactctcctgctcaaacccctattaagcctccggc 328  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||  || || ||||||||| |||||  ||||||||||||||||||     
T  41524756 tcccctgctccttcccatgttcatactcttgtcaccctgcaaaacccccaacccatcatcgtcatcactctccagctcatgcccctattaagcctccggt 41524657  T
Q  329 tcacacaccttt 340  Q
    |||||| |||||    
T  41524656 tcacactccttt 41524645  T

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Target: chr2; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 229 - 340
Target Start/End: Complemental strand, 41524930 - 41524809
Alignment:
Q  229 tcccctgctccttcccatgttcatactc----------tcgtcaccctgcaaaacccccaatccattgtcatcgtcactctcctgctcaaacccctatta 318  Q
    ||||||||||||||||||||||||||||          ||||||||||||||||||||||| ||||  || || ||||||||| |||||  |||||||||    
T  41524930 tcccctgctccttcccatgttcatactcctttatatcctcgtcaccctgcaaaacccccaacccatcatcgtcatcactctccagctcatgcccctatta 41524831  T
Q  319 agcctccggctcacacaccttt 340  Q
    ||||||||| |||||| |||||    
T  41524830 agcctccggttcacactccttt 41524809  T

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Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 93 - 186
Target Start/End: Complemental strand, 41524552 - 41524460
Alignment:
Q  93 ccctgcaaaacgcccaacccatcatcgtcatcactctccagctcatgcccctattaagcctccgattcacactcctttacatcctccttaccct 186  Q
    ||||||||||| ||||||||||| || |||||||||||| |||||   |||||||||| ||||| ||||||| ||||||| ||||||| |||||    
T  41524552 ccctgcaaaacccccaacccatcgtcatcatcactctcctgctcaaatccctattaagtctccg-ttcacacacctttacttcctcctcaccct 41524460  T

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Target: chr3 (Bit Score: 82; Significance: 1e-38; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 34 - 186
Target Start/End: Complemental strand, 3175818 - 3175663
Alignment:
Q  34 caacatcattcaccatcccataccccttcacatgttcacactcctttacattctcgtttccctgcaaaacgcccaacccatcatcgtcatca---ctctc 130  Q
    |||||||| ||||||||||   ||||||| |||||||||||||||||||||  ||||  ||||||||||| |||||||||||||| ||||||   |||||    
T  3175818 caacatcactcaccatcccccgccccttcccatgttcacactcctttacatcatcgtcaccctgcaaaacccccaacccatcatcatcatcatcactctc 3175719  T
Q  131 cagctcatgcccctattaagcctccgattcacactcctttacatcctccttaccct 186  Q
    | ||||||||||||||||||||| || ||||||||||||||||||||||| |||||    
T  3175718 ctgctcatgcccctattaagccttcgtttcacactcctttacatcctcctcaccct 3175663  T

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Target: chr3; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 34 - 186
Target Start/End: Complemental strand, 3176004 - 3175846
Alignment:
Q  34 caacatcattcaccatcccataccccttcacatgttcacactcctttacattctcgtttccctgcaaaacgcccaacccatcatcgtcatca------ct 127  Q
    |||||||| |||||||||| | | ||||| ||||||||||||||||||||| |||||   ||||||||||  ||||||||||||| ||||||      ||    
T  3176004 caacatcactcaccatcccttgctccttctcatgttcacactcctttacatcctcgtcatcctgcaaaacctccaacccatcatcatcatcatcatcact 3175905  T
Q  128 ctccagctcatgcccctattaagcctccgattcacactcctttacatcctccttaccct 186  Q
    |||| |||||||||||||||||  ||||| ||||||||||||||||||||||| |||||    
T  3175904 ctcctgctcatgcccctattaaaactccggttcacactcctttacatcctcctcaccct 3175846  T

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Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 21 - 152
Target Start/End: Complemental strand, 3175648 - 3175517
Alignment:
Q  21 acatcatcaacatcaacatcattcaccatcccataccccttcacatgttcacactcctttacattctcgtttccctgcaaaacgcccaacccatcatcgt 120  Q
    |||||| || || |||||||| ||||| |||| | ||||||| ||||||||||||||||||||| |||||  ||||  |||||  || |||||| ||| |    
T  3175648 acatcaccaccaccaacatcactcaccttcccctgccccttcccatgttcacactcctttacatcctcgtcaccctaaaaaaccacccacccattatcat 3175549  T
Q  121 catcactctccagctcatgcccctattaagcc 152  Q
    || |||||||| ||||||||||| ||||||||    
T  3175548 caccactctcctgctcatgcccccattaagcc 3175517  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 257 - 340
Target Start/End: Complemental strand, 3175765 - 3175679
Alignment:
Q  257 tcgtcaccctgcaaaacccccaatc---cattgtcatcgtcactctcctgctcaaacccctattaagcctccggctcacacaccttt 340  Q
    ||||||||||||||||||||||| |   |||  ||||| |||||||||||||||  |||||||||||||| ||  |||||| |||||    
T  3175765 tcgtcaccctgcaaaacccccaacccatcatcatcatcatcactctcctgctcatgcccctattaagccttcgtttcacactccttt 3175679  T

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Target: chr5 (Bit Score: 81; Significance: 4e-38; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 31 - 180
Target Start/End: Original strand, 20964054 - 20964209
Alignment:
Q  31 catcaacatcattcaccatcccataccccttcacatgttcacactcctttacattctcgtttccctgcaaaacgcccaacc------catcatcgtcatc 124  Q
    |||||||||||||||||||||| ||| ||||| ||||||||||||||| ||||| |||||  ||||||||||| |||||||      ||||||| |||||    
T  20964054 catcaacatcattcaccatcccctactccttcccatgttcacactcctatacatcctcgtcaccctgcaaaacccccaacccatcatcatcatcatcatc 20964153  T
Q  125 actctccagctcatgcccctattaagcctccgattcacactcctttacatcctcct 180  Q
    ||||||| || ||||||||||||||||||||| |||||||||||||||||| ||||    
T  20964154 actctcccgcacatgcccctattaagcctccggttcacactcctttacatcatcct 20964209  T

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Target: chr5; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 34 - 172
Target Start/End: Original strand, 20964243 - 20964381
Alignment:
Q  34 caacatcattcaccatcccataccccttcacatgttcacactcctttacattctcgtttccctgcaaaacgcccaacccatcatcgtcatcactctccag 133  Q
    |||||||| ||||||||||   ||||||||||| ||||||||||||||||| |||||  ||||||||||| ||| |||||| ||| |||||||||||| |    
T  20964243 caacatcactcaccatcccccgccccttcacattttcacactcctttacatcctcgtcaccctgcaaaaccccccacccattatcatcatcactctcctg 20964342  T
Q  134 ctcatgcccctattaagcctccgattcacactcctttac 172  Q
    |||||||||||||||| |||||  ||||||| |||||||    
T  20964343 ctcatgcccctattaaacctccagttcacacacctttac 20964381  T

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Target: chr5; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 256 - 340
Target Start/End: Original strand, 20964295 - 20964379
Alignment:
Q  256 ctcgtcaccctgcaaaacccccaatccattgtcatcgtcactctcctgctcaaacccctattaagcctccggctcacacaccttt 340  Q
    |||||||||||||||||||||| | ||||| ||||| |||||||||||||||  |||||||||| ||||| | ||||||||||||    
T  20964295 ctcgtcaccctgcaaaaccccccacccattatcatcatcactctcctgctcatgcccctattaaacctccagttcacacaccttt 20964379  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 43 - 116
Target Start/End: Original strand, 20963970 - 20964043
Alignment:
Q  43 tcaccatcccataccccttcacatgttcacactcctttacattctcgtttccctgcaaaacgcccaacccatca 116  Q
    |||||||||||| | ||||| ||||||||||||||||||||| ||| |  |||||| |||| ||| ||||||||    
T  20963970 tcaccatcccatgcaccttctcatgttcacactcctttacatcctcctcaccctgctaaacccccgacccatca 20964043  T

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Target: chr1 (Bit Score: 76; Significance: 4e-35; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 28 - 186
Target Start/End: Complemental strand, 24541202 - 24541041
Alignment:
Q  28 caacatcaacatcattcaccatcccataccccttcacatgttcacactcctttacattctcgtttccctgcaaaacgcccaacccatcatcgt---catc 124  Q
    |||||||||||||| |||||||||| ||| ||||| ||||||||| ||||||||||| |||||  ||| ||||||| |||||| ||||||| |   || |    
T  24541202 caacatcaacatcactcaccatcccctacgccttcccatgttcaccctcctttacatcctcgtcacccagcaaaacccccaactcatcatcatcaacaac 24541103  T
Q  125 actctccagctcatgcccctattaagcctccgattcacactcctttacatcctccttaccct 186  Q
    ||||||| |||||| ||||||||||| ||||| ||||||||||||||||||||||| |||||    
T  24541102 actctcctgctcattcccctattaagtctccggttcacactcctttacatcctcctcaccct 24541041  T

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Target: chr1; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 34 - 180
Target Start/End: Complemental strand, 24541013 - 24540867
Alignment:
Q  34 caacatcattcaccatcccataccccttcacatgttcacactcctttacattctcgtttccctgcaaaacgcccaacccatcatcgtcatcactctccag 133  Q
    |||||||| |||||||||| | ||||||| ||||||||||||||||||||| |||||  ||||||||||| ||| |||||| ||| |||||| ||||| |    
T  24541013 caacatcactcaccatcccctgccccttcccatgttcacactcctttacatcctcgtcaccctgcaaaaccccccacccattatcatcatcattctcctg 24540914  T
Q  134 ctcatgcccctattaagcctccgattcacactcctttacatcctcct 180  Q
    | ||||| ||||||||||||||| ||||||  ||||||| |||||||    
T  24540913 cccatgctcctattaagcctccggttcacaaacctttacttcctcct 24540867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 256 - 340
Target Start/End: Complemental strand, 24540961 - 24540877
Alignment:
Q  256 ctcgtcaccctgcaaaacccccaatccattgtcatcgtcactctcctgctcaaacccctattaagcctccggctcacacaccttt 340  Q
    |||||||||||||||||||||| | ||||| ||||| ||| |||||||| ||  | |||||||||||||||| ||||| ||||||    
T  24540961 ctcgtcaccctgcaaaaccccccacccattatcatcatcattctcctgcccatgctcctattaagcctccggttcacaaaccttt 24540877  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 43 - 116
Target Start/End: Complemental strand, 24541283 - 24541210
Alignment:
Q  43 tcaccatcccataccccttcacatgttcacactcctttacattctcgtttccctgcaaaacgcccaacccatca 116  Q
    |||||||||||| | ||||| ||||||||||||||||||||| ||| |  |||||| |||| ||| ||||||||    
T  24541283 tcaccatcccatgcaccttctcatgttcacactcctttacatcctcctcaccctgctaaacccccgacccatca 24541210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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