View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0733_low_55 (Length: 336)
Name: NF0733_low_55
Description: NF0733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0733_low_55 |
 | |
|
| [»] scaffold0050 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 172; Significance: 2e-92; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 26 - 221
Target Start/End: Complemental strand, 8736001 - 8735806
Alignment:
| Q |
26 |
atcaacaacacagaaacaattacttgcttcaaaagcatcgtaaaacatgaagtggattcgtgcacctatttgagaatataaagttcttgtttctaccctc |
125 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
8736001 |
atcaacaacacagaaacaattacttgcttcaaaagcatcgtaaaacatgaagtggattcgtgcacctatttgagaatataaagttcttgtttctactctc |
8735902 |
T |
|
| Q |
126 |
cctataaataaaccaagaccacggcaacctcttaattcaatcaaccatctcatgaacattggcagctttcccgttaaaatgaatatcgttaccttc |
221 |
Q |
| |
|
||||||||||||||||||||||| |||| |||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
8735901 |
cctataaataaaccaagaccacgacaacagcttaattcgatcaaccatctcatgaacattggcagctttcccgttgaaatgaatatcgttaccttc |
8735806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 45 - 217
Target Start/End: Complemental strand, 8717122 - 8716950
Alignment:
| Q |
45 |
ttacttgcttcaaaagcatcgtaaaacatgaagtggattcgtgcacctatttgagaatataaagttcttgtttctaccctccctataaataaaccaagac |
144 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| || |||||||||||||| | ||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
8717122 |
ttacttgcttcaaaagcatcgtaaaacatgaagtggatttgtccacctatttgagaagacaaagttcttgtttctacccgccctataaataaaccaagac |
8717023 |
T |
|
| Q |
145 |
cacggcaacctcttaattcaatcaaccatctcatgaacattggcagctttcccgttaaaatgaatatcgttac |
217 |
Q |
| |
|
|| | |||| |||||||| | |||||||||||||||||||| || |||||||||||||| |||||||||||| |
|
|
| T |
8717022 |
catgacaacagcttaattcgaccaaccatctcatgaacattgacatctttcccgttaaaaagaatatcgttac |
8716950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 222 - 259
Target Start/End: Complemental strand, 8735780 - 8735743
Alignment:
| Q |
222 |
ggccaaattaaatgagtcacttttttaacccttctttc |
259 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8735780 |
ggccaaattaaatgagtcacttttttaacccttctttc |
8735743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0050 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0050
Description:
Target: scaffold0050; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 78 - 172
Target Start/End: Complemental strand, 72059 - 71965
Alignment:
| Q |
78 |
tggattcgtgcacctatttgagaatataaagttcttgtttctaccctccctataaataaaccaagaccacggcaacctcttaattcaatcaacca |
172 |
Q |
| |
|
||||||||| ||| |||||||||| | || ||||| |||||||| || || ||||||||||||||| | ||||| |||||| |||||||||| |
|
|
| T |
72059 |
tggattcgtccacgtatttgagaagacaagattcttatttctaccgtctctgataataaaccaagaccatgacaaccacttaatacaatcaacca |
71965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 4913 times since January 2019
Visitors: 4840