View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0733_low_56 (Length: 328)
Name: NF0733_low_56
Description: NF0733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0733_low_56 |
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Alignment Details
Target: chr1 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 47965324 - 47965557
Alignment:
| Q |
1 |
acaatttcgtcgctgtttcaatggggaacccgttgagtaataatccaatctgccattcaccattttggttaatgaaagttcttcatctaaacttaaatat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47965324 |
acaatttcgtcgctgtttcaatggggaacccgttgagtaataatccaatccgccattcaccattttggttaatgaaagttcttcatctaaacttaaatat |
47965423 |
T |
|
| Q |
101 |
ttaatgtccaaatcaccaatatgaaactcctcttccagcttcttccacaagcttgaatcactttgtttagtaaccatttatccctatcatatttatcatt |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47965424 |
ttaatgtccaaatcaccaatatgaaactcctcttccagcttcttccacaagcttgaatcactttgtttagtaaccatttatccctatcatatttatcatt |
47965523 |
T |
|
| Q |
201 |
catgacattacacatcaaggatctgatgccaagt |
234 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| |
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| T |
47965524 |
catgacattacacaacaaggatctgatgccaagt |
47965557 |
T |
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