View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0733_low_58 (Length: 326)
Name: NF0733_low_58
Description: NF0733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0733_low_58 |
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Alignment Details
Target: chr3 (Bit Score: 201; Significance: 1e-109; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 58 - 266
Target Start/End: Complemental strand, 48225847 - 48225639
Alignment:
| Q |
58 |
catttttgtttacttatcgttgtaatatccttttagggcagattatatggtactcctattaaatgtatatagtaaatttaataccacaaatagtatatac |
157 |
Q |
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| T |
48225847 |
catttgtgtttaattatcgttgtaatatccttttagggcagattatatggtactcctattaaatgtatatagtaaatttaataccacaaatagtatatac |
48225748 |
T |
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| Q |
158 |
atttacaaagagcatataaaattgagatattaactaaattgccaagttttcctaatttgaatgaaatttgcaatgcttgaattaaaacaatgatatgtgt |
257 |
Q |
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| T |
48225747 |
atttacaaagagcatataaaattgagatattaactaaattgccaagttttcctaatttgaatgaaatttgcaatgcttgaattaaaacaatgatatgtgt |
48225648 |
T |
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| Q |
258 |
ggcagagag |
266 |
Q |
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||||||||| |
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| T |
48225647 |
ggcagagag |
48225639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 45
Target Start/End: Complemental strand, 48225878 - 48225840
Alignment:
| Q |
7 |
tagattattctggtggtattcatctgccacgcatttgtg |
45 |
Q |
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|||||| | |||||||||||||||||||||||||||||| |
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| T |
48225878 |
tagattgtgctggtggtattcatctgccacgcatttgtg |
48225840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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