View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0733_low_60 (Length: 324)
Name: NF0733_low_60
Description: NF0733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0733_low_60 |
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| [»] scaffold0294 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 92; Significance: 1e-44; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 78 - 215
Target Start/End: Complemental strand, 5380637 - 5380503
Alignment:
| Q |
78 |
agcaaaggcagcagcaccacgaagagcctctctccatttcggcgacttatctttcttcttcttcttcgaaagtttgctcaagagactctcaaacgcttgt |
177 |
Q |
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| T |
5380637 |
agcaaaggcagcagccccatgaagagcctctctccatttcagcgtcttatctttcttcttcttc---gaaagtttgctcaagagactttcaaaagcttgt |
5380541 |
T |
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| Q |
178 |
ccaaactcaccagtttggtgacgtacctcggagggatc |
215 |
Q |
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| T |
5380540 |
ccaaactcaccagtttggtgacgtacctccaagggatc |
5380503 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 136 - 203
Target Start/End: Complemental strand, 5174359 - 5174292
Alignment:
| Q |
136 |
ttcttcttcgaaagtttgctcaagagactctcaaacgcttgtccaaactcaccagtttggtgacgtac |
203 |
Q |
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| T |
5174359 |
ttcttctttgaaattctgctcaagagactttggaacgcttttccaaactcacctgtttggtgtcgtac |
5174292 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 136 - 203
Target Start/End: Complemental strand, 5276105 - 5276038
Alignment:
| Q |
136 |
ttcttcttcgaaagtttgctcaagagactctcaaacgcttgtccaaactcaccagtttggtgacgtac |
203 |
Q |
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| T |
5276105 |
ttcttctttgaaattctgctcaagagactttggaacgcttttccaaactcacctgtttggtgtcgtac |
5276038 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 137 - 203
Target Start/End: Original strand, 5692812 - 5692878
Alignment:
| Q |
137 |
tcttcttcgaaagtttgctcaagagactctcaaacgcttgtccaaactcaccagtttggtgacgtac |
203 |
Q |
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| T |
5692812 |
tcttctttgaaattctgctcaagagactttggaacgcttttccaaactcacctgtttggtgtcgtac |
5692878 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0294 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0294
Description:
Target: scaffold0294; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 80 - 131
Target Start/End: Original strand, 11770 - 11821
Alignment:
| Q |
80 |
caaaggcagcagcaccacgaagagcctctctccatttcggcgacttatcttt |
131 |
Q |
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| T |
11770 |
caaagccagtagcaccacgaagagcctctctccatttcggcgacttatcttt |
11821 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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