View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0733_low_63 (Length: 321)

Name: NF0733_low_63
Description: NF0733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0733_low_63
NF0733_low_63
[»] chr3 (3 HSPs)
chr3 (205-321)||(33757704-33757820)
chr3 (206-321)||(13179622-13179737)
chr3 (207-321)||(13184281-13184395)
[»] chr2 (3 HSPs)
chr2 (207-321)||(21465005-21465119)
chr2 (207-321)||(44794490-44794604)
chr2 (207-321)||(44794971-44795085)
[»] chr1 (1 HSPs)
chr1 (207-321)||(37260632-37260746)
[»] scaffold0065 (1 HSPs)
scaffold0065 (207-319)||(33516-33628)
[»] scaffold0671 (1 HSPs)
scaffold0671 (206-321)||(2349-2464)
[»] scaffold0359 (1 HSPs)
scaffold0359 (207-321)||(8503-8617)
[»] scaffold0003 (1 HSPs)
scaffold0003 (207-321)||(289187-289301)
[»] chr7 (3 HSPs)
chr7 (207-321)||(16157251-16157365)
chr7 (207-321)||(21368381-21368495)
chr7 (207-311)||(22707434-22707536)
[»] chr6 (2 HSPs)
chr6 (207-321)||(21299132-21299246)
chr6 (220-301)||(9344343-9344424)
[»] chr8 (3 HSPs)
chr8 (206-321)||(16417291-16417406)
chr8 (207-321)||(18774040-18774154)
chr8 (206-319)||(17459592-17459705)
[»] scaffold0002 (1 HSPs)
scaffold0002 (206-321)||(127251-127366)
[»] chr5 (1 HSPs)
chr5 (207-321)||(22821033-22821147)
[»] chr4 (2 HSPs)
chr4 (211-321)||(11475867-11475977)
chr4 (207-310)||(34455975-34456079)


Alignment Details
Target: chr3 (Bit Score: 101; Significance: 5e-50; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 205 - 321
Target Start/End: Original strand, 33757704 - 33757820
Alignment:
Q  205 ggtgatgaacactattttgtgaaaattgttcatattttacttttaattatgaattgataaaagttgcttgctgaaagattatataaaggcacaaaacgca 304  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||| ||    
T  33757704 ggtgatgaacactattttgtgaaaattgttcatatttgacttttaattatgaattgataaaagttgcttgctgaaagattaattaaaggcacaaaacaca 33757803  T
Q  305 agaaatgaactaaaaat 321  Q
    |||||||||||||||||    
T  33757804 agaaatgaactaaaaat 33757820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 206 - 321
Target Start/End: Original strand, 13179622 - 13179737
Alignment:
Q  206 gtgatgaacactattttgtgaaaattgttcatattttacttttaattatgaattgataaaagttgcttgctgaaagattatataaaggcacaaaacgcaa 305  Q
    |||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| |||  |||| ||||||||| |||    
T  13179622 gtgatgaacactattttgtgaaaattgttcatatttgacttttaatcatgaattgataaaagttgcttgctgaaagtttaattaaaagcacaaaacacaa 13179721  T
Q  306 gaaatgaactaaaaat 321  Q
    ||||||||||||||||    
T  13179722 gaaatgaactaaaaat 13179737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 207 - 321
Target Start/End: Original strand, 13184281 - 13184395
Alignment:
Q  207 tgatgaacactattttgtgaaaattgttcatattttacttttaattatgaattgataaaagttgcttgctgaaagattatataaaggcacaaaacgcaag 306  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| |||  |||| ||||||||| ||||    
T  13184281 tgatgaacactattttgtgaaaattgttcatatttgacttttaatcatgaattgataaaagttgcttgctgaaagtttaattaaaagcacaaaacacaag 13184380  T
Q  307 aaatgaactaaaaat 321  Q
    |||||||||||||||    
T  13184381 aaatgaactaaaaat 13184395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 99; Significance: 7e-49; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 207 - 321
Target Start/End: Original strand, 21465005 - 21465119
Alignment:
Q  207 tgatgaacactattttgtgaaaattgttcatattttacttttaattatgaattgataaaagttgcttgctgaaagattatataaaggcacaaaacgcaag 306  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||| ||||    
T  21465005 tgatgaacactattttgtgaaaattgttcatatttgacttttaattatgaattgataaaagttgcttgctgaaagattaattaaaggcacaaaacacaag 21465104  T
Q  307 aaatgaactaaaaat 321  Q
    |||||||||||||||    
T  21465105 aaatgaactaaaaat 21465119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 207 - 321
Target Start/End: Original strand, 44794490 - 44794604
Alignment:
Q  207 tgatgaacactattttgtgaaaattgttcatattttacttttaattatgaattgataaaagttgcttgctgaaagattatataaaggcacaaaacgcaag 306  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||  |||||||||||||| ||||    
T  44794490 tgatgaacactattttgtgaaaattgttcatatttgacttttaatcatgaattgataaaagttgcttgctgaaagattaattaaaggcacaaaacacaag 44794589  T
Q  307 aaatgaactaaaaat 321  Q
    |||||||||||||||    
T  44794590 aaatgaactaaaaat 44794604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 207 - 321
Target Start/End: Complemental strand, 44795085 - 44794971
Alignment:
Q  207 tgatgaacactattttgtgaaaattgttcatattttacttttaattatgaattgataaaagttgcttgctgaaagattatataaaggcacaaaacgcaag 306  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||  |||||||||||||| ||||    
T  44795085 tgatgaacactattttgtgaaaattgttcatatttgacttttaatcatgaattgataaaagttgcttgctgaaagattaattaaaggcacaaaacacaag 44794986  T
Q  307 aaatgaactaaaaat 321  Q
    |||||||||||||||    
T  44794985 aaatgaactaaaaat 44794971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 99; Significance: 7e-49; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 207 - 321
Target Start/End: Complemental strand, 37260746 - 37260632
Alignment:
Q  207 tgatgaacactattttgtgaaaattgttcatattttacttttaattatgaattgataaaagttgcttgctgaaagattatataaaggcacaaaacgcaag 306  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||| ||||    
T  37260746 tgatgaacactattttgtgaaaattgttcatatttgacttttaattatgaattgataaaagttgcttgctgaaagattaattaaaggcacaaaacacaag 37260647  T
Q  307 aaatgaactaaaaat 321  Q
    |||||||||||||||    
T  37260646 aaatgaactaaaaat 37260632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 207 - 319
Target Start/End: Original strand, 33516 - 33628
Alignment:
Q  207 tgatgaacactattttgtgaaaattgttcatattttacttttaattatgaattgataaaagttgcttgctgaaagattatataaaggcacaaaacgcaag 306  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||| ||||    
T  33516 tgatgaacactattttgtgaaaattgttcatatttgacttttaattatgaattgataaaagttgcttgctgaaagattaattaaaggcacaaaacacaag 33615  T
Q  307 aaatgaactaaaa 319  Q
    |||||||||||||    
T  33616 aaatgaactaaaa 33628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0671 (Bit Score: 96; Significance: 5e-47; HSPs: 1)
Name: scaffold0671
Description:

Target: scaffold0671; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 206 - 321
Target Start/End: Complemental strand, 2464 - 2349
Alignment:
Q  206 gtgatgaacactattttgtgaaaattgttcatattttacttttaattatgaattgataaaagttgcttgctgaaagattatataaaggcacaaaacgcaa 305  Q
    |||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||| |||    
T  2464 gtgatgaacactattttgagaaaattgttcatatttgacttttaattatgaattgataaaagttgcttgctgaaagattaattaaaggcacaaaacacaa 2365  T
Q  306 gaaatgaactaaaaat 321  Q
    ||||||||||||||||    
T  2364 gaaatgaactaaaaat 2349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0359 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: scaffold0359
Description:

Target: scaffold0359; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 207 - 321
Target Start/End: Original strand, 8503 - 8617
Alignment:
Q  207 tgatgaacactattttgtgaaaattgttcatattttacttttaattatgaattgataaaagttgcttgctgaaagattatataaaggcacaaaacgcaag 306  Q
    ||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||| ||||    
T  8503 tgatgaacactatttcgtgaaaattgttcatatttgacttttaattatgaattgataaaagttgcttgctgaaagattaattaaaggcacaaaacacaag 8602  T
Q  307 aaatgaactaaaaat 321  Q
    |||||||||||||||    
T  8603 aaatgaactaaaaat 8617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 207 - 321
Target Start/End: Complemental strand, 289301 - 289187
Alignment:
Q  207 tgatgaacactattttgtgaaaattgttcatattttacttttaattatgaattgataaaagttgcttgctgaaagattatataaaggcacaaaacgcaag 306  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||  ||||||| |||||| ||||    
T  289301 tgatgaacactattttgtgaaaattgttcatatttgacttttaattatgaattgataaaagttgcttgctgaaagattaattaaaggctcaaaacacaag 289202  T
Q  307 aaatgaactaaaaat 321  Q
    |||||||||||||||    
T  289201 aaatgaactaaaaat 289187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 95; Significance: 2e-46; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 207 - 321
Target Start/End: Complemental strand, 16157365 - 16157251
Alignment:
Q  207 tgatgaacactattttgtgaaaattgttcatattttacttttaattatgaattgataaaagttgcttgctgaaagattatataaaggcacaaaacgcaag 306  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||| | ||    
T  16157365 tgatgaacactattttgtgaaaattgttcatatttgacttttaattatgaattgataaaagttgcttgctgaaagattaattaaaggcacaaaacactag 16157266  T
Q  307 aaatgaactaaaaat 321  Q
    |||||||||||||||    
T  16157265 aaatgaactaaaaat 16157251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 207 - 321
Target Start/End: Original strand, 21368381 - 21368495
Alignment:
Q  207 tgatgaacactattttgtgaaaattgttcatattttacttttaattatgaattgataaaagttgcttgctgaaagattatataaaggcacaaaacgcaag 306  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||  |||||||||||||| || |    
T  21368381 tgatgaacactattttgtgaaaattgttcatatttgacttttaattatgaattgataaaagttgtttgctgaaagattaattaaaggcacaaaacacagg 21368480  T
Q  307 aaatgaactaaaaat 321  Q
    |||||||||||||||    
T  21368481 aaatgaactaaaaat 21368495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 207 - 311
Target Start/End: Original strand, 22707434 - 22707536
Alignment:
Q  207 tgatgaacactattttgtgaaaattgttcatattttacttttaattatgaattgataaaagttgcttgctgaaagattatataaaggcacaaaacgcaag 306  Q
    ||||||| ||||||| || ||||||||| |||||| |||||||||||||||||||||||||||||||| | ||||||||| || ||||||||||| ||||    
T  22707434 tgatgaatactattt-gtaaaaattgtttatatttgacttttaattatgaattgataaaagttgcttgattaaagattat-tataggcacaaaacacaag 22707531  T
Q  307 aaatg 311  Q
    |||||    
T  22707532 aaatg 22707536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 95; Significance: 2e-46; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 207 - 321
Target Start/End: Original strand, 21299132 - 21299246
Alignment:
Q  207 tgatgaacactattttgtgaaaattgttcatattttacttttaattatgaattgataaaagttgcttgctgaaagattatataaaggcacaaaacgcaag 306  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||  |||||||||||||| ||||    
T  21299132 tgatgaacactattttgtgaaaattgttcatatttgacttttaatcatgaattgataaaagttgcttgctgaaagattaattaaaggcacaaaacacaag 21299231  T
Q  307 aaatgaactaaaaat 321  Q
    |||||||||||||||    
T  21299232 aaatgaactaaaaat 21299246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 220 - 301
Target Start/End: Complemental strand, 9344424 - 9344343
Alignment:
Q  220 tttgtgaaaattgttcatattttacttttaattatgaattgataaaagttgcttgctgaaagattatataaaggcacaaaac 301  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||  || |||||||||||    
T  9344424 tttgtgaaaattgttcatatttgacttttaattatgaattgataaaagttgcttgctgaaatattaattataggcacaaaac 9344343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 92; Significance: 1e-44; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 206 - 321
Target Start/End: Original strand, 16417291 - 16417406
Alignment:
Q  206 gtgatgaacactattttgtgaaaattgttcatattttacttttaattatgaattgataaaagttgcttgctgaaagattatataaaggcacaaaacgcaa 305  Q
    ||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||  ||||||| |||||| |||    
T  16417291 gtgatgaacactattttatgaaaattgttcatatttgacttttaattatgaattgataaaagttgcttgctgaaagattaattaaaggcgcaaaacacaa 16417390  T
Q  306 gaaatgaactaaaaat 321  Q
    ||||||||||||||||    
T  16417391 gaaatgaactaaaaat 16417406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 207 - 321
Target Start/End: Original strand, 18774040 - 18774154
Alignment:
Q  207 tgatgaacactattttgtgaaaattgttcatattttacttttaattatgaattgataaaagttgcttgctgaaagattatataaaggcacaaaacgcaag 306  Q
    |||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |||||||| |||||||||  |||||||||||||| ||||    
T  18774040 tgatgaacactattttgtgaaaattgatcatatttgacttttaattatgaattgataaaaattgcttgcagaaagattaattaaaggcacaaaacacaag 18774139  T
Q  307 aaatgaactaaaaat 321  Q
    |||||||||||||||    
T  18774140 aaatgaactaaaaat 18774154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 206 - 319
Target Start/End: Original strand, 17459592 - 17459705
Alignment:
Q  206 gtgatgaacactattttgtgaaaattgttcatattttacttttaattatgaattgataaaagttgcttgctgaaagattatataaaggcacaaaacgcaa 305  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||  ||||| | ||||||  ||    
T  17459592 gtgatgaacactattttgtgaaaattgttcatatttgacttttaattatgaattgataaaagttgcttgctgaaagattaattaaagtctcaaaacataa 17459691  T
Q  306 gaaatgaactaaaa 319  Q
    ||||||| ||||||    
T  17459692 gaaatgatctaaaa 17459705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 206 - 321
Target Start/End: Complemental strand, 127366 - 127251
Alignment:
Q  206 gtgatgaacactattttgtgaaaattgttcatattttacttttaattatgaattgataaaagttgcttgctgaaagattatataaaggcacaaaacgcaa 305  Q
    |||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| |||  |||| ||||||||| |||    
T  127366 gtgatgaacactattttgtgaaaattgttcatatttgacttttaatcatgaattgataaaagttgcttgctgaaagtttaattaaaagcacaaaacacaa 127267  T
Q  306 gaaatgaactaaaaat 321  Q
    ||||||||||||||||    
T  127266 gaaatgaactaaaaat 127251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 207 - 321
Target Start/End: Original strand, 22821033 - 22821147
Alignment:
Q  207 tgatgaacactattttgtgaaaattgttcatattttacttttaattatgaattgataaaagttgcttgctgaaagattatataaaggcacaaaacgcaag 306  Q
    |||| |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||  |||||| ||||||| ||||    
T  22821033 tgataaacactattttgtgaaaattgttcatatttgacttataattatgaattgataaaagttgcttgctgaaagattaattaaaggtacaaaacacaag 22821132  T
Q  307 aaatgaactaaaaat 321  Q
    |||||||||||||||    
T  22821133 aaatgaactaaaaat 22821147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 87; Significance: 1e-41; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 211 - 321
Target Start/End: Complemental strand, 11475977 - 11475867
Alignment:
Q  211 gaacactattttgtgaaaattgttcatattttacttttaattatgaattgataaaagttgcttgctgaaagattatataaaggcacaaaacgcaagaaat 310  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||  ||||||||||||||  |||||||    
T  11475977 gaacactattttgtgaaaattgttcatatttgacttttaattatgaattgataaaagttgattgctgaaagattaattaaaggcacaaaacttaagaaat 11475878  T
Q  311 gaactaaaaat 321  Q
    |||||||||||    
T  11475877 gaactaaaaat 11475867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 207 - 310
Target Start/End: Complemental strand, 34456079 - 34455975
Alignment:
Q  207 tgatgaacactattttgtgaaaattgttcatattttacttttaattatgaattgat-aaaagttgcttgctgaaagattatataaaggcacaaaacgcaa 305  Q
    ||||||||||| ||||||||||||||||||||||| |||||||||||||||||| | ||||||||||||||||||||||| ||| |||||||||||  ||    
T  34456079 tgatgaacactgttttgtgaaaattgttcatatttgacttttaattatgaattggtaaaaagttgcttgctgaaagattaaatataggcacaaaacataa 34455980  T
Q  306 gaaat 310  Q
    |||||    
T  34455979 gaaat 34455975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University