View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0733_low_64 (Length: 320)
Name: NF0733_low_64
Description: NF0733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0733_low_64 |
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Alignment Details
Target: chr3 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 5 - 227
Target Start/End: Complemental strand, 47245699 - 47245478
Alignment:
| Q |
5 |
atgattcaccttaagagataaatttcttgcacaaatatgttaattgaagatctaattgcacattcatgactttgattcctaaagcggttagcccgcataa |
104 |
Q |
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| T |
47245699 |
atgattcaccttaagagataaatttcttgcacaaatatgttaattgaagatctaattgcgcattcatgactttgattcctaaagcggttagcccgcataa |
47245600 |
T |
|
| Q |
105 |
gttatcagattttcaactgattccttcattagttgtatttatatattcatttcatctcactcgacctttgtaaatagtagacaaattttggatgatatag |
204 |
Q |
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| T |
47245599 |
gttatcagattttcaactgattccatcattagttgtatttatatgtttatttaatctcattcgacctttgtaaatagtagacaaattttggatgatatag |
47245500 |
T |
|
| Q |
205 |
ttatcgctaagaaggtggttgat |
227 |
Q |
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|||||| |||||||||||||||| |
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| T |
47245499 |
ttatcg-taagaaggtggttgat |
47245478 |
T |
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