View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0733_low_67 (Length: 314)
Name: NF0733_low_67
Description: NF0733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0733_low_67 |
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Alignment Details
Target: chr8 (Bit Score: 135; Significance: 2e-70; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 20 - 158
Target Start/End: Original strand, 44309401 - 44309539
Alignment:
| Q |
20 |
tgcaacatttttcgtcattaatagatatgcattttgcgtcatcaatttagtagactttttgatgttgcattggataaggaaaaattggttgcagatatgt |
119 |
Q |
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| T |
44309401 |
tgcaacatttttcgtcattaatagatatacattttgcgtcatcaatttagtagactttttgatgttgcattggataaggaaaaattggttgcagatatgt |
44309500 |
T |
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| Q |
120 |
ttgaagaggagggttgagttaaaatgaatttcaacaaaa |
158 |
Q |
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| T |
44309501 |
ttgaagaggagggttgagttaaaatgaatttcaacaaaa |
44309539 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 155 - 255
Target Start/End: Original strand, 44309978 - 44310078
Alignment:
| Q |
155 |
aaaaaggtccaacttctcataatagctttccaaaaaccttgtcttgagatgcatactatgaactaccaccagtccattgtgaaagagattgacataattg |
254 |
Q |
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| T |
44309978 |
aaaaaggtccaacttctcataatagctttccaaaaaccttgtcttgagatgcatactatgaactaccaccagtccattgtgaaagagattgacataattg |
44310077 |
T |
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| Q |
255 |
t |
255 |
Q |
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| T |
44310078 |
t |
44310078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 253 - 285
Target Start/End: Original strand, 44310094 - 44310126
Alignment:
| Q |
253 |
tgttcagctataggaaacctataacatcaaagc |
285 |
Q |
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| T |
44310094 |
tgttcagctataggaaacctataacatcaaagc |
44310126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 133; Significance: 4e-69; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 7 - 200
Target Start/End: Original strand, 18701145 - 18701354
Alignment:
| Q |
7 |
gaagcaaaggccctgcaacatttttcgtcattaatagatatgcattttgcgtcatcaatttagtagactttttgatgttgcattggataaggaaaaattg |
106 |
Q |
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||||||||||||||| ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| ||||||||| |||||||| |
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| T |
18701145 |
gaagcaaaggccctggaacatttttcgtcattaatagatatacattttgtgtcatcaatttagtagactttttgatgttgcgttggataagtaaaaattg |
18701244 |
T |
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| Q |
107 |
gttgcagatatgtttgaagaggagggttgagttaaaatgaatttc----------------aacaaaaaggtccaacttctcataatagctttccaaaaa |
190 |
Q |
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| T |
18701245 |
gttgcagatatgtttgaagaggagggttgagttaaaatgaatttcaatagacagtaaataaaataaaaaggtccaacttctcataatagctttccaaaaa |
18701344 |
T |
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| Q |
191 |
ccttgtcttg |
200 |
Q |
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| T |
18701345 |
ccttgtcttg |
18701354 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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