View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0733_low_71 (Length: 306)
Name: NF0733_low_71
Description: NF0733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0733_low_71 |
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Alignment Details
Target: chr8 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 108 - 238
Target Start/End: Original strand, 32614324 - 32614454
Alignment:
| Q |
108 |
atctcaaattaatgattgagatcgtttaaagttgattttgttattgtgtaatttgatttgtctgatttcaaattaatggccgatatcgtttactaagtgt |
207 |
Q |
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| T |
32614324 |
atctcaaattaatgattgagatcgtttaaagttgattttgttattgtgtaatttgatttgtccgatgtcaaattaatggccgatatagtttaccaagtgt |
32614423 |
T |
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| Q |
208 |
aaacaagtgcttttaaagaattttgaagtct |
238 |
Q |
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| T |
32614424 |
aaacaagtgcttttaaagaattttgaagtct |
32614454 |
T |
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Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 125 - 199
Target Start/End: Complemental strand, 30241592 - 30241519
Alignment:
| Q |
125 |
gagatcgtttaaagttgattttgttattgtgtaatttgatttgtctgatttcaaattaatggccgatatcgttta |
199 |
Q |
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| T |
30241592 |
gagatcgtttaaagttg-ttttgttattgtgtaatctgagatgtctgatttcagattaatggtcaagatcgttta |
30241519 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 159
Target Start/End: Original strand, 50488179 - 50488231
Alignment:
| Q |
107 |
aatctcaaattaatgattgagatcgtttaaagttgattttgttattgtgtaat |
159 |
Q |
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| T |
50488179 |
aatctcaaattaacagtcgagatcgtttaaaattgattttggtattgtgtaat |
50488231 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 126 - 183
Target Start/End: Complemental strand, 23344163 - 23344106
Alignment:
| Q |
126 |
agatcgtttaaagttgattttgttattgtgtaatttgatttgtctgatttcaaattaa |
183 |
Q |
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| T |
23344163 |
agatcgtttaaacttgattttgttattgtgtaatctgaattgtccgatctcaaattaa |
23344106 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 108 - 199
Target Start/End: Original strand, 30000664 - 30000755
Alignment:
| Q |
108 |
atctcaaattaatgattgagatcgtttaaagttgattttgttattgtgtaatttgatttgtctgatttcaaattaatggccgatatcgttta |
199 |
Q |
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| T |
30000664 |
atctcaaattaacggtcgagattgtttgaaaatgattttgttatcgtgtaatttggacagtctggtttcaaattaatggctgagatcgttta |
30000755 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 139 - 183
Target Start/End: Complemental strand, 18169971 - 18169927
Alignment:
| Q |
139 |
ttgattttgttattgtgtaatttgatttgtctgatttcaaattaa |
183 |
Q |
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| T |
18169971 |
ttgattttgttattgtgtaatttgagccgtctgattttaaattaa |
18169927 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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