View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0733_low_72 (Length: 302)
Name: NF0733_low_72
Description: NF0733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0733_low_72 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 175; Significance: 3e-94; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 14 - 227
Target Start/End: Complemental strand, 51866714 - 51866503
Alignment:
| Q |
14 |
gaactgttctggcttcctgctttttattatctatcatggtcattaccaaaaatatactttgtattcaaaaggtgtcattcatctgaatttattatttttg |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| |
|
|
| T |
51866714 |
gaactgttctggcttcctgctttttattatctatcatggtcattaccaaaaatatactttgtattcaaaaggtgtcc--catctgaatttattattattg |
51866617 |
T |
|
| Q |
114 |
tgttggtttgcatgtcaccaccccctcatctcacaatctgctatgtcttaatttaggacaaatttatgacaaaatcctgaatttattattatcatattaa |
213 |
Q |
| |
|
||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
51866616 |
tgttggtttacctgtcaccaccccctcatctcacaatctgctatgtcttaatttatgacaaatttatgacaaaatcctgaatttatcattatcatattaa |
51866517 |
T |
|
| Q |
214 |
aatatgccatgatg |
227 |
Q |
| |
|
||| |||||||||| |
|
|
| T |
51866516 |
aatgtgccatgatg |
51866503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 3553 times since January 2019
Visitors: 4814