View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0733_low_73 (Length: 298)
Name: NF0733_low_73
Description: NF0733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0733_low_73 |
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Alignment Details
Target: chr2 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 87 - 201
Target Start/End: Original strand, 29453247 - 29453361
Alignment:
| Q |
87 |
agacttatataatttcaattaagaaagtaagcattaaagaactggaattaaaggtataaagaattagtgacaaattaaattgatgattagattggagaga |
186 |
Q |
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| T |
29453247 |
agacttatataatttcaattaagaaagtaagcattaaagaactggaactaaaggtataaaggattagtgacaaattaaattgatgattagattggagaga |
29453346 |
T |
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| Q |
187 |
gcataatcatataat |
201 |
Q |
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| T |
29453347 |
gcataatcatataat |
29453361 |
T |
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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 95 - 178
Target Start/End: Original strand, 29264881 - 29264968
Alignment:
| Q |
95 |
ataatttcaattaagaaagtaagcattaaagaactggaattaaaggt----ataaagaattagtgacaaattaaattgatgattagat |
178 |
Q |
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| T |
29264881 |
ataatttcaattaagaaaataagcatcaaagaaatggaattagcgatttaaataaagaatcagtgacagatgaaattgatgattagat |
29264968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 129 - 197
Target Start/End: Complemental strand, 35264116 - 35264046
Alignment:
| Q |
129 |
tggaattaaaggtataaagaat----tagtgacaaattaaattgatgattagattggagagagcataatcata |
197 |
Q |
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| T |
35264116 |
tggaattaaaggtataaacaatcgattagtgacagattaaattgatgattagat--cagagagcataatcata |
35264046 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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