View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0733_low_76 (Length: 297)
Name: NF0733_low_76
Description: NF0733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0733_low_76 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 8 - 297
Target Start/End: Original strand, 47964936 - 47965205
Alignment:
| Q |
8 |
ccaacaatatgtatccaaagttgcaaagtgaataataacttttgcaggagaaacagggaaatgtttaaaattattagatttttcgtgttaaagtttttac |
107 |
Q |
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| T |
47964936 |
ccaacaaaatgtatccaaagttgaaaagtgaataataacttttgcaggagaaacagggaaatgtttaaaattattagatttttcgtgttaaagtttttac |
47965035 |
T |
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| Q |
108 |
tatttatgtttctatttgttctaaatgtatatgcgttgttttaaattgaaattcaataaaaatatattactgtttgtcacacacatcaccacctttagaa |
207 |
Q |
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| T |
47965036 |
tatttatgtttctatttgttctaaatgtatatgcgttgttttaaattgaaattcaataaaaatatattaatgtttgtcacacacatcaccacctttagaa |
47965135 |
T |
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| Q |
208 |
ttgatggtatggaagaaggttttctctcatataattgttggaacaccggtgtctagggatcatcatcaagctgagttttgagaacaacat |
297 |
Q |
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|||| |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
47965136 |
ttga--------------------tctcatgtaattgttggaacaccggtgtctcgggatcatcatcaagctgagttttgagaacaacat |
47965205 |
T |
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