View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0733_low_77 (Length: 293)

Name: NF0733_low_77
Description: NF0733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0733_low_77
NF0733_low_77
[»] chr3 (2 HSPs)
chr3 (121-284)||(3113221-3113395)
chr3 (147-282)||(28879569-28879705)
[»] chr6 (2 HSPs)
chr6 (119-284)||(27336357-27336533)
chr6 (119-284)||(27397097-27397273)
[»] chr8 (2 HSPs)
chr8 (150-284)||(32536017-32536151)
chr8 (126-284)||(39548705-39548877)
[»] chr1 (3 HSPs)
chr1 (142-284)||(6841414-6841567)
chr1 (119-233)||(26500687-26500801)
chr1 (177-219)||(12806742-12806784)
[»] chr2 (1 HSPs)
chr2 (119-239)||(3272751-3272875)
[»] scaffold0128 (1 HSPs)
scaffold0128 (67-113)||(10243-10289)


Alignment Details
Target: chr3 (Bit Score: 133; Significance: 3e-69; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 121 - 284
Target Start/End: Complemental strand, 3113395 - 3113221
Alignment:
Q  121 gattggatcttctcctgtgactggagagtccagtggaatcctagccattaaatgataaatagatgtgaggaattaaat-----------gtcaaaatgaa 209  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||           |||||||||||    
T  3113395 gattggatcttctcctgtgactggagagtccagtggaatcctaaccattaaatgataaatagatgtgaggaattaaataggaattaaatgtcaaaatgaa 3113296  T
Q  210 gagagataatgtatttaatggtttagatttaaacagtagaaaactggagaaagttttcacaggagggaatctgct 284  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3113295 gagagataatgtatttaatggtttagatttaaacagtagaaaactggagaaagttttcacaggagggaatctgct 3113221  T

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Target: chr3; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 147 - 282
Target Start/End: Complemental strand, 28879705 - 28879569
Alignment:
Q  147 agtccagtggaatcctagccattaaatgataaatagatgtgaggaattaaatgtcaaaatgaagagagataatgtatttaatggtttagat-ttaaacag 245  Q
    ||||||||| ||||||||||||||||| |||| || |||||||||||||||| |||||||||| |||||||||||| |||||||||||||| |||||| |    
T  28879705 agtccagtgtaatcctagccattaaataataattacatgtgaggaattaaatatcaaaatgaatagagataatgtacttaatggtttagatgttaaaccg 28879606  T
Q  246 tagaaaactggagaaagttttcacaggagggaatctg 282  Q
    |||||||||| ||||||| |||||| |||| ||||||    
T  28879605 tagaaaactgcagaaagtattcacaagaggaaatctg 28879569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 131; Significance: 5e-68; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 119 - 284
Target Start/End: Complemental strand, 27336533 - 27336357
Alignment:
Q  119 gggattggatcttctcctgtgactggagagtccagtggaatcctagccattaaatgataaatagatgtga-----------ggaattaaatgtcaaaatg 207  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||           |||||||||||||||||||    
T  27336533 gggattggatcttctcctgtgactggagagtcctgtggaatcctagccattaaatgataaatacatgtgaagaattaaataggaattaaatgtcaaaatg 27336434  T
Q  208 aagagagataatgtatttaatggtttagatttaaacagtagaaaactggagaaagttttcacaggagggaatctgct 284  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27336433 aagagagataatgtatttaatggtttagatttaaacagtagaaaactggagaaagttttcacaggagggaatctgct 27336357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 119 - 284
Target Start/End: Complemental strand, 27397273 - 27397097
Alignment:
Q  119 gggattggatcttctcctgtgactggagagtccagtggaatcctagccattaaatgataaatagatgtga-----------ggaattaaatgtcaaaatg 207  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||           |||||||||||||||||||    
T  27397273 gggattggatcttctcctgtgactggagagtcctgtggaatcctagccattaaatgataaatacatgtgaagaattaaataggaattaaatgtcaaaatg 27397174  T
Q  208 aagagagataatgtatttaatggtttagatttaaacagtagaaaactggagaaagttttcacaggagggaatctgct 284  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27397173 aagagagataatgtatttaatggtttagatttaaacagtagaaaactggagaaagttttcacaggagggaatctgct 27397097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 127; Significance: 1e-65; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 150 - 284
Target Start/End: Original strand, 32536017 - 32536151
Alignment:
Q  150 ccagtggaatcctagccattaaatgataaatagatgtgaggaattaaatgtcaaaatgaagagagataatgtatttaatggtttagatttaaacagtaga 249  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32536017 ccagtggaatcctagccattaaatgataaatacatgtgaggaattaaatgtcaaaatgaagagagataatgtatttaatggtttagatttaaacagtaga 32536116  T
Q  250 aaactggagaaagttttcacaggagggaatctgct 284  Q
    |||||||||||||||||||||||||||||| ||||    
T  32536117 aaactggagaaagttttcacaggagggaatatgct 32536151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 126 - 284
Target Start/End: Original strand, 39548705 - 39548877
Alignment:
Q  126 gatcttctcctgtgactggagagtccagtggaatcctagccattaaatgataaatagatgtga--------------ggaattaaatgtcaaaatgaaga 211  Q
    ||||||||| |||||| ||||||||||||||||||||||||||||||| ||||||| ||||||              |  ||||||| ||||||||||||    
T  39548705 gatcttctcttgtgaccggagagtccagtggaatcctagccattaaataataaatacatgtgatatttgttgaatttgacattaaatatcaaaatgaaga 39548804  T
Q  212 gagataatgtatttaatggtttagatttaaacagtagaaaactggagaaagttttcacaggagggaatctgct 284  Q
    || ||||| ||||||||||||||||||||||||||||||||||||| |||||||||| ||| || ||||||||    
T  39548805 gaaataatatatttaatggtttagatttaaacagtagaaaactggaaaaagttttcagaggtggaaatctgct 39548877  T

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Target: chr1 (Bit Score: 104; Significance: 7e-52; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 142 - 284
Target Start/End: Complemental strand, 6841567 - 6841414
Alignment:
Q  142 tggagagtccagtggaatcctagccattaaatgataaatagatgtgaggaattaaat-----------gtcaaaatgaagagagataatgtatttaatgg 230  Q
    |||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||           ||||||||||||||||||||||||||||||||    
T  6841567 tggagagtccggtggaatcctagccattaaatgataaatacatgtgaggaattaaatagaaattaaatgtcaaaatgaagagagataatgtatttaatgg 6841468  T
Q  231 tttagatttaaacagtagaaaactggagaaagttttcacaggagggaatctgct 284  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  6841467 tttagatttaaacggtagaaaactggagaaagttttcacaggagggaatctgct 6841414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 119 - 233
Target Start/End: Complemental strand, 26500801 - 26500687
Alignment:
Q  119 gggattggatcttctcctgtgactggagagtccagtggaatcctagccattaaatgataaatagatgtgaggaattaaatgtcaaaatgaagagagataa 218  Q
    |||| |||||| |||||||||| |||||  ||||||| ||||||| ||||| ||| ||||||| |  | || |||||||||| | ||| || ||||||||    
T  26500801 gggaatggatcctctcctgtgattggaggatccagtgaaatcctaaccattgaataataaatacacataagcaattaaatgttataattaaaagagataa 26500702  T
Q  219 tgtatttaatggttt 233  Q
    | |||||||||||||    
T  26500701 tatatttaatggttt 26500687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 177 - 219
Target Start/End: Original strand, 12806742 - 12806784
Alignment:
Q  177 aaatagatgtgaggaattaaatgtcaaaatgaagagagataat 219  Q
    ||||| |||||||||||||||||| |||||||||| |||||||    
T  12806742 aaatacatgtgaggaattaaatgttaaaatgaagaaagataat 12806784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 119 - 239
Target Start/End: Complemental strand, 3272875 - 3272751
Alignment:
Q  119 gggattggatcttctcctgtgactggagagtccagtggaatcctagccattaaatgataaatagatgtgaggaattaaatgtcaaaatgaagaga----g 214  Q
    ||||||||||| |||||||| || ||||||||| ||| ||||| ||||||| ||| ||||||| |||||||||||||||||| ||||||||||||    |    
T  3272875 gggattggatcctctcctgtaacgggagagtccggtgtaatccaagccattgaataataaataaatgtgaggaattaaatgttaaaatgaagagagatag 3272776  T
Q  215 ataatgtatttaatggtttagattt 239  Q
    |||||||| ||||||||||||||||    
T  3272775 ataatgtacttaatggtttagattt 3272751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0128 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 67 - 113
Target Start/End: Original strand, 10243 - 10289
Alignment:
Q  67 tttgttttttgtccgaacttttaagcaaatgatagcgtcagttcccc 113  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||    
T  10243 tttgttttttgtccaaacttttaagcaaatgatagcgtcagttcccc 10289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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