View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0733_low_78 (Length: 292)
Name: NF0733_low_78
Description: NF0733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0733_low_78 |
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Alignment Details
Target: chr8 (Bit Score: 94; Significance: 6e-46; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 108 - 244
Target Start/End: Complemental strand, 13079663 - 13079526
Alignment:
| Q |
108 |
tataaataattatcaataaaaccaaacataacataatattttttaccctttgttattgttgtttcgatataatgaatgaatcaatctc-nnnnnnnnnnn |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13079663 |
tataaataattatcaataaaaccaaacataacataatattttttaccctttgttattgttgtttcgatataatgaatgaatcaatctctttttatttttt |
13079564 |
T |
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| Q |
207 |
nctgagtgctttttcatttcattcaactctctctgctc |
244 |
Q |
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| T |
13079563 |
tctgagtgctttttcatttcattcaactctctctgctc |
13079526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 53 - 95
Target Start/End: Complemental strand, 13079751 - 13079709
Alignment:
| Q |
53 |
cacagagaaagagagggagtttcacacatgacatgattcgata |
95 |
Q |
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| T |
13079751 |
cacagagaaagagagggagtttcacacatgacatgattcgata |
13079709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 84; Significance: 6e-40; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 108 - 195
Target Start/End: Original strand, 19340437 - 19340524
Alignment:
| Q |
108 |
tataaataattatcaataaaaccaaacataacataatattttttaccctttgttattgttgtttcgatataatgaatgaatcaatctc |
195 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19340437 |
tataaataattatcaataaaaccaaacgtaacataatattttttaccctttgttattgttgtttcgatataatgaatgaatcaatctc |
19340524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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