View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0733_low_79 (Length: 290)
Name: NF0733_low_79
Description: NF0733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0733_low_79 |
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Alignment Details
Target: chr7 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 11 - 261
Target Start/End: Complemental strand, 22550330 - 22550080
Alignment:
| Q |
11 |
catagggaaggacgatgagcttctaaagactgacatcagaaccatagctagacctgatgttgcagaagtctgtcttcaggtatcttatttaatcattata |
110 |
Q |
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| T |
22550330 |
catagggaaggacgatgagcttctaaagactgacatcagaaccatagctagacctgatgttgcagaagtctgtcttcaggtatcttatttaatcattata |
22550231 |
T |
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| Q |
111 |
atctgtatatggaaacaaataagctatctccagagttgtcaatggcagattgcagaaattagctgtttgttcagattctgctatgctacactatagcgcc |
210 |
Q |
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| T |
22550230 |
atctgtatatggaaacaaataagctctctccagtgttgtcaatggcagatcgcagaaattagctgtttgttcagattctgctatgctacactatagcgcc |
22550131 |
T |
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| Q |
211 |
actgtagccgttatacgacaaaactttgtactaaataagatattccagaac |
261 |
Q |
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| T |
22550130 |
actgtagccgttattcgacaaaactttgtactaaataagatattccagaac |
22550080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 141 - 200
Target Start/End: Original strand, 34925249 - 34925308
Alignment:
| Q |
141 |
cagagttgtcaatggcagattgcagaaattagctgtttgttcagattctgctatgctaca |
200 |
Q |
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| T |
34925249 |
cagagttgtcaattgcagatcgtggaaaatagcagtttgttcaaattctgctatgctaca |
34925308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 198
Target Start/End: Original strand, 28802709 - 28802758
Alignment:
| Q |
149 |
tcaatggcagattgcagaaattagctgtttgttcagattctgctatgcta |
198 |
Q |
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| T |
28802709 |
tcaattgccgattgcagaaaatagcggtttgttcagattccgctatgcta |
28802758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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