View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0733_low_80 (Length: 289)

Name: NF0733_low_80
Description: NF0733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0733_low_80
NF0733_low_80
[»] chr7 (2 HSPs)
chr7 (47-217)||(47142719-47142889)
chr7 (138-217)||(20070200-20070277)
[»] chr1 (3 HSPs)
chr1 (47-214)||(29682178-29682345)
chr1 (126-217)||(25424391-25424480)
chr1 (95-131)||(25424286-25424322)
[»] chr8 (2 HSPs)
chr8 (126-214)||(24031764-24031850)
chr8 (88-131)||(24031911-24031954)
[»] chr2 (1 HSPs)
chr2 (129-214)||(22805241-22805325)
[»] chr5 (1 HSPs)
chr5 (85-131)||(22304601-22304647)


Alignment Details
Target: chr7 (Bit Score: 155; Significance: 3e-82; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 47 - 217
Target Start/End: Original strand, 47142719 - 47142889
Alignment:
Q  47 gtgagatgaataatatagggtgtgcacacttctttaagttttgatcgctgtcgtacgcgatcaaaaataagtattttaaaacaagaacagaaactacgaa 146  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  47142719 gtgagatgaataatatagggtgtgcacacttctttaagttttgatcgttgtcgtacgcgatcaaaaataagtatttgaaaacaagaacagaaactacgaa 47142818  T
Q  147 ttcaaaaatataaattggggcggattctgtttgcctcacagaacaatttgcaaattaagagagattcagtt 217  Q
    ||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||    
T  47142819 ttcaaaaatataaattggggcggtttctgtttgcctcgcagaacaatttgcaaattaagagagattcagtt 47142889  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 138 - 217
Target Start/End: Original strand, 20070200 - 20070277
Alignment:
Q  138 aactacgaattcaaaaatataaattggggcggattctgtttgcctcacagaacaatttgcaaattaagagagattcagtt 217  Q
    ||||||||||||||||||||||||||||  || || ||||| | | |  |||||| ||||||||||||||||||| ||||    
T  20070200 aactacgaattcaaaaatataaattggg--ggtttttgttttctttatggaacaagttgcaaattaagagagattaagtt 20070277  T

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Target: chr1 (Bit Score: 140; Significance: 2e-73; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 47 - 214
Target Start/End: Original strand, 29682178 - 29682345
Alignment:
Q  47 gtgagatgaataatatagggtgtgcacacttctttaagttttgatcgctgtcgtacgcgatcaaaaataagtattttaaaacaagaacagaaactacgaa 146  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29682178 gtgagatgaataatatagggtgtgcacacttctttaagttttgatcgttgtcgtacgcgatcaaaaataagtattttaaaacaagaacagaaactacgaa 29682277  T
Q  147 ttcaaaaatataaattggggcggattctgtttgcctcacagaacaatttgcaaattaagagagattca 214  Q
    ||||||||||||||||||||| | || ||||||||||||| |||||||| |||||||| |||||||||    
T  29682278 ttcaaaaatataaattggggctgtttttgtttgcctcacaaaacaattttcaaattaaaagagattca 29682345  T

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Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 126 - 217
Target Start/End: Original strand, 25424391 - 25424480
Alignment:
Q  126 aacaagaacagaaactacgaattcaaaaatataaattggggcggattctgtttgcctcacagaacaatttgcaaattaagagagattcagtt 217  Q
    ||||||||||  | |||||||||||||| ||||||||||||  | || ||||||| |||| ||||||||||||| |||||||||||||||||    
T  25424391 aacaagaacatcagctacgaattcaaaagtataaattgggg--gtttttgtttgcttcacggaacaatttgcaatttaagagagattcagtt 25424480  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 95 - 131
Target Start/End: Original strand, 25424286 - 25424322
Alignment:
Q  95 tgtcgtacgcgatcaaaaataagtattttaaaacaag 131  Q
    |||||| | ||||||||||||||||||||||||||||    
T  25424286 tgtcgtgcacgatcaaaaataagtattttaaaacaag 25424322  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 126 - 214
Target Start/End: Complemental strand, 24031850 - 24031764
Alignment:
Q  126 aacaagaacagaaactacgaattcaaaaatataaattggggcggattctgtttgcctcacagaacaatttgcaaattaagagagattca 214  Q
    ||||||||||| | ||| ||||||||||||||||||||||  || || ||||||| |||| |||||| |||||||||| |||| |||||    
T  24031850 aacaagaacagcagctatgaattcaaaaatataaattggg--gggttttgtttgcttcacggaacaacttgcaaattaggagaaattca 24031764  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 88 - 131
Target Start/End: Complemental strand, 24031954 - 24031911
Alignment:
Q  88 tgatcgctgtcgtacgcgatcaaaaataagtattttaaaacaag 131  Q
    |||||| |||||| | ||||||||||||||||||||||||||||    
T  24031954 tgatcgttgtcgtgcacgatcaaaaataagtattttaaaacaag 24031911  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 129 - 214
Target Start/End: Original strand, 22805241 - 22805325
Alignment:
Q  129 aagaacagaaactacgaattcaaaaatataaattggggcggattctgtttgcctcacagaacaatttgcaaattaagagagattca 214  Q
    |||||||| | ||| ||||||||||||||||||||||| || || ||||||| |||| |||||| |||||||||| |||| |||||    
T  22805241 aagaacagcagctatgaattcaaaaatataaattgggg-gggttttgtttgcttcacggaacaacttgcaaattaggagaaattca 22805325  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 131
Target Start/End: Complemental strand, 22304647 - 22304601
Alignment:
Q  85 ttttgatcgctgtcgtacgcgatcaaaaataagtattttaaaacaag 131  Q
    ||||||||| ||||||   ||||||||||||||||||||||||||||    
T  22304647 ttttgatcgttgtcgtggacgatcaaaaataagtattttaaaacaag 22304601  T

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