View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0733_low_86 (Length: 285)
Name: NF0733_low_86
Description: NF0733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0733_low_86 |
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Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 43 - 240
Target Start/End: Complemental strand, 26755952 - 26755755
Alignment:
| Q |
43 |
agcacagattgtttctcctatgagtttcacattttgatgttgacattactgtttcaaaagcttcaacaagcaatgcaaccttctttttcctggctggagc |
142 |
Q |
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| T |
26755952 |
agcacaaattgtttctcctatgagtttcacattttgatgttgacattactgtttcaaaagcttcaacaagcaatgcaaccttctttttcctggctggagc |
26755853 |
T |
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| Q |
143 |
aagtttagtgacagcttttctgagtgaaaaatcaagcatccattcctctgcattttttctatcatccatcatctgatgcttcagttcaaccttctctg |
240 |
Q |
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| T |
26755852 |
aagtttagtgacagcttttctgagtgaaaaatcaagcatccattcctctgcattttttctatcatccatcatctgatgcttcagttcaaccttctctg |
26755755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 87 - 235
Target Start/End: Original strand, 6039275 - 6039423
Alignment:
| Q |
87 |
attactgtttcaaaagcttcaacaagcaatgcaaccttctttttcctggctggagcaagtttagtgacagcttttctgagtgaaaaatcaagcatccatt |
186 |
Q |
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| T |
6039275 |
attacagtttcaaaggcttcaactagcaatgccactttcttctttctagcaggagcaagcttgttcacagcttgccttagtgcacaatcaaccatccaat |
6039374 |
T |
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| Q |
187 |
cctctgcattttttctatcatccatcatctgatgcttcagttcaacctt |
235 |
Q |
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| T |
6039375 |
cctctgcattctttctttcatccatcatttgatgcctcaaatcaacctt |
6039423 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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