View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0733_low_91 (Length: 281)

Name: NF0733_low_91
Description: NF0733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0733_low_91
NF0733_low_91
[»] chr7 (16 HSPs)
chr7 (1-202)||(11279090-11279290)
chr7 (1-208)||(36222750-36222962)
chr7 (1-202)||(46846760-46846957)
chr7 (1-201)||(33312593-33312792)
chr7 (1-190)||(23107597-23107785)
chr7 (1-202)||(17863542-17863742)
chr7 (1-202)||(17866801-17867001)
chr7 (1-202)||(24783003-24783203)
chr7 (41-202)||(23313690-23313849)
chr7 (1-202)||(6966745-6966945)
chr7 (1-202)||(23760056-23760256)
chr7 (1-204)||(36843385-36843587)
chr7 (1-202)||(294462-294662)
chr7 (1-199)||(9765398-9765590)
chr7 (80-199)||(35773058-35773176)
chr7 (92-199)||(3862435-3862540)
[»] chr5 (10 HSPs)
chr5 (1-200)||(26712793-26712991)
chr5 (1-200)||(26982531-26982729)
chr5 (1-202)||(33574686-33574886)
chr5 (4-202)||(11989268-11989465)
chr5 (1-202)||(15532648-15532848)
chr5 (1-202)||(15542830-15543030)
chr5 (1-199)||(14616876-14617073)
chr5 (1-201)||(22159342-22159542)
chr5 (1-202)||(34405446-34405646)
chr5 (3-167)||(7650400-7650562)
[»] chr3 (6 HSPs)
chr3 (1-198)||(39563958-39564153)
chr3 (1-202)||(22626760-22626960)
chr3 (5-202)||(11139021-11139216)
chr3 (1-202)||(13979088-13979284)
chr3 (1-147)||(47411841-47411988)
chr3 (1-147)||(35366028-35366174)
[»] scaffold0500 (1 HSPs)
scaffold0500 (1-201)||(2290-2489)
[»] chr2 (8 HSPs)
chr2 (1-202)||(40017575-40017775)
chr2 (1-147)||(16294550-16294697)
chr2 (1-202)||(31527987-31528187)
chr2 (1-202)||(23673792-23673992)
chr2 (1-148)||(31626199-31626347)
chr2 (1-202)||(36326522-36326720)
chr2 (3-200)||(32576136-32576331)
chr2 (1-147)||(13709721-13709868)
[»] chr6 (15 HSPs)
chr6 (1-199)||(16883277-16883474)
chr6 (1-200)||(22247158-22247356)
chr6 (1-200)||(22221323-22221521)
chr6 (1-202)||(13017637-13017837)
chr6 (1-202)||(20527610-20527810)
chr6 (1-202)||(1838071-1838272)
chr6 (1-202)||(19665111-19665312)
chr6 (1-202)||(14790216-14790416)
chr6 (1-202)||(14795244-14795444)
chr6 (1-202)||(15534686-15534887)
chr6 (1-202)||(32704702-32704901)
chr6 (43-199)||(32426969-32427123)
chr6 (1-160)||(12983826-12983989)
chr6 (1-147)||(12980939-12981089)
chr6 (114-202)||(15537881-15537966)
[»] chr4 (6 HSPs)
chr4 (1-200)||(12171582-12171780)
chr4 (1-202)||(26063141-26063341)
chr4 (1-195)||(26060192-26060385)
chr4 (1-202)||(647651-647851)
chr4 (1-196)||(650923-651117)
chr4 (1-202)||(2541483-2541682)
[»] scaffold0063 (1 HSPs)
scaffold0063 (1-201)||(7440-7639)
[»] chr1 (13 HSPs)
chr1 (1-202)||(13492860-13493060)
chr1 (1-202)||(13495585-13495785)
chr1 (1-200)||(16190619-16190822)
chr1 (1-202)||(27282555-27282755)
chr1 (1-202)||(34065942-34066142)
chr1 (1-139)||(22104817-22104956)
chr1 (42-202)||(1936225-1936383)
chr1 (1-202)||(32506302-32506501)
chr1 (108-202)||(10759719-10759811)
chr1 (1-202)||(23990536-23990735)
chr1 (1-147)||(15296980-15297130)
chr1 (1-160)||(22456938-22457100)
chr1 (108-160)||(49147745-49147797)
[»] scaffold0567 (1 HSPs)
scaffold0567 (1-202)||(6258-6457)
[»] chr8 (4 HSPs)
chr8 (1-200)||(12575747-12575945)
chr8 (3-193)||(44007909-44008097)
chr8 (96-196)||(41779220-41779318)
chr8 (1-132)||(13096686-13096819)
[»] scaffold0352 (1 HSPs)
scaffold0352 (1-195)||(3051-3248)
[»] scaffold0665 (1 HSPs)
scaffold0665 (1-202)||(92-292)
[»] scaffold0264 (1 HSPs)
scaffold0264 (1-91)||(24631-24722)
[»] scaffold0440 (1 HSPs)
scaffold0440 (1-54)||(9606-9660)


Alignment Details
Target: chr7 (Bit Score: 143; Significance: 4e-75; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 11279290 - 11279090
Alignment:
Q  1 acttaggttaaacctattacctagttcagagttaaaagggagg-ttagtggtcattcaatttccatgatcaatatgcattttcataaagctagggctagt 99  Q
    ||||||||||||||||||||||||||||||||||||||  ||| ||||||||||||||||||| ||||||||||||||| ||||||||||||||| ||||    
T  11279290 acttaggttaaacctattacctagttcagagttaaaagccagggttagtggtcattcaatttctatgatcaatatgcatgttcataaagctagggttagt 11279191  T
Q  100 ggtcgattataaacatacaaaaagcattaaacacaaggtaatatgaataaagactaaacttttattgaatatttcaaaggagttcaacaaattagggttc 199  Q
     |||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| ||| ||||||||||||||||||||||||||||    
T  11279190 agtcgatgataaacatacaaaaagcattaagcacaaggtaatatgaataaagactaaactttcattg-ata-ttcaaaggagttcaacaaattagggttc 11279093  T
Q  200 cca 202  Q
    |||    
T  11279092 cca 11279090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 36222750 - 36222962
Alignment:
Q  1 acttaggttaaacctattacctagttcagagttaaaagggagg-ttagtggtcattcaatttccatgatcaatatgcattttcataaagctagggctagt 99  Q
    |||||||||||| |||||| |||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  36222750 acttaggttaaatctattagctagttcagagttaaaagcgagggttagtggtcattcaatttccatgatcaatatgcatgttcataaagctagggctagt 36222849  T
Q  100 ggtcgattataaacatacaaaaagcattaaacacaaggtaatatgaa-taaagactaaacttttattgaatat----ttcaaaggagttcaacaaattag 194  Q
     |||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||    |||||| ||||||||||||||||    
T  36222850 agtcgatgataaacatacaaaaagcattaaacacaaggtaatatgaattaaagactaaactttcattgaatatgatattcaaa-gagttcaacaaattag 36222948  T
Q  195 ggttcccacaggtt 208  Q
    | |||||| |||||    
T  36222949 gattcccataggtt 36222962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 46846760 - 46846957
Alignment:
Q  1 acttaggttaaacctattacctagttcagagttaaaagggagg-ttagtggtcattcaatttccatgatcaatatgcattttcataaagctagggctagt 99  Q
    |||||||||||||||||||| |||||||||||||||||  ||| |||||| |||||||||||||||||||||||||||| ||||   |||||||| || |    
T  46846760 acttaggttaaacctattacttagttcagagttaaaagtcagggttagtgatcattcaatttccatgatcaatatgcatgttca---agctagggttaat 46846856  T
Q  100 ggtcgattataaacatacaaaaagcattaaacacaaggtaatatgaataaagactaaacttttattgaatatttcaaaggagttcaacaaattagggttc 199  Q
     |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||||||||||||||||||||    
T  46846857 agtcgatgataaacatacaaaaagcattaaacacaaggtaatatgaataaagactaaactttcattg-ata-ttcaaaggagttcaacaaattagggttc 46846954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 33312792 - 33312593
Alignment:
Q  1 acttaggttaaacctattacctagttcagagttaaaagggagg-ttagtggtcattcaatttccatgatcaatatgcattttcataaagctagggctagt 99  Q
    ||||||||||||| ||||||||||||||||||||||||  ||| ||||||||||||||||||| ||||||||||||||| ||||||||||||||| || |    
T  33312792 acttaggttaaacatattacctagttcagagttaaaagtcagggttagtggtcattcaatttctatgatcaatatgcatattcataaagctagggttaat 33312693  T
Q  100 ggtcgattataaacatacaaaaagcattaaacacaaggtaatatgaataaagactaaacttttattgaatatttcaaaggagttcaacaaattagggttc 199  Q
     |||||| ||||||||||| || ||||||||||||||||||||||||||||||||||| ||| ||| |||  ||||| ||||||||||||||||||||||    
T  33312692 agtcgatgataaacatacataaggcattaaacacaaggtaatatgaataaagactaaattttcatt-aat-gttcaatggagttcaacaaattagggttc 33312595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 23107785 - 23107597
Alignment:
Q  1 acttaggttaaacctattacctagttcagagttaaaagggaggtt-agtggtcattcaatttccatgatcaatatgcattttcataaagctagggctagt 99  Q
    |||||||||||||||||||||||||||||||| |||||   || | |||||||||||||| || |  |||||| ||||| ||||||| | ||||| || |    
T  23107785 acttaggttaaacctattacctagttcagagtcaaaagtctgggtcagtggtcattcaatctctactatcaatttgcatattcataacgttagggttaat 23107686  T
Q  100 ggtcgattataaacatacaaaaagcattaaacacaaggtaatatgaataaagactaaacttttattgaatatttcaaaggagttcaacaaa 190  Q
     |||||| |||||||| |||||||||||||||| || ||||||||||||||||||||||||| |||||  | |||||||||||||||||||    
T  23107685 agtcgatgataaacatgcaaaaagcattaaacaaaaagtaatatgaataaagactaaactttcattga--aattcaaaggagttcaacaaa 23107597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 17863542 - 17863742
Alignment:
Q  1 acttaggttaaacctattacctagttcagagttaaaagggagg-ttagtggtcattcaatttccatgatcaatatgcattttcataaagctagggctagt 99  Q
    ||||||||||||| |||||||||| ||||||| |||||  ||| |||||||||||| ||| || | ||||| | ||||| ||||||||||||||| ||||    
T  17863542 acttaggttaaacttattacctagatcagagtcaaaagccagggttagtggtcatttaatctctaagatcagtttgcatattcataaagctagggttagt 17863641  T
Q  100 ggtcgattataaacatacaaaaagcattaaacacaaggtaatatgaataaagactaaacttttattgaatatttcaaaggagttcaacaaattagggttc 199  Q
     ||| || ||||||||||||||||||| ||||| || ||||||||||| || |||| ||||| | || ||| ||||||||||||||||||||||||||||    
T  17863642 agtcaatgataaacatacaaaaagcataaaacataaagtaatatgaattaaaactagactttcaatg-ata-ttcaaaggagttcaacaaattagggttc 17863739  T
Q  200 cca 202  Q
    |||    
T  17863740 cca 17863742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 17866801 - 17867001
Alignment:
Q  1 acttaggttaaacctattacctagttcagagttaaaagggagg-ttagtggtcattcaatttccatgatcaatatgcattttcataaagctagggctagt 99  Q
    ||||||||||||| |||||||||| ||||||| |||||  ||| |||||||||||| ||| || | ||||| | ||||| ||||||||||||||| ||||    
T  17866801 acttaggttaaacttattacctagatcagagtcaaaagccagggttagtggtcatttaatctctaagatcagtttgcatattcataaagctagggttagt 17866900  T
Q  100 ggtcgattataaacatacaaaaagcattaaacacaaggtaatatgaataaagactaaacttttattgaatatttcaaaggagttcaacaaattagggttc 199  Q
     ||| || ||||||||||||||||||| ||||| || ||||||||||| || |||| ||||| | || ||| ||||||||||||||||||||||||||||    
T  17866901 agtcaatgataaacatacaaaaagcataaaacataaagtaatatgaattaaaactagactttcaatg-ata-ttcaaaggagttcaacaaattagggttc 17866998  T
Q  200 cca 202  Q
    |||    
T  17866999 cca 17867001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 24783203 - 24783003
Alignment:
Q  1 acttaggttaaacctattacctagttcagagttaaaagggagg-ttagtggtcattcaatttccatgatcaatatgcattttcataaagctagggctagt 99  Q
    ||||||||||||| |||||||||| ||||||| |||||  ||| |||||||||||||||| || | ||||||| ||||| |||||||||||| || ||||    
T  24783203 acttaggttaaacttattacctagatcagagtcaaaagccagggttagtggtcattcaatctctaagatcaatttgcatattcataaagctatggttagt 24783104  T
Q  100 ggtcgattataaacatacaaaaagcattaaacacaaggtaatatgaataaagactaaacttttattgaatatttcaaaggagttcaacaaattagggttc 199  Q
     |||||| ||||||||||||||||||| ||||| || |||||||| || || |||| ||||| |||| ||| ||||||||||||||||||| || |||||    
T  24783103 agtcgatgataaacatacaaaaagcatcaaacataaagtaatatggattaaaactagactttcattg-ata-ttcaaaggagttcaacaaactacggttc 24783006  T
Q  200 cca 202  Q
    |||    
T  24783005 cca 24783003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 41 - 202
Target Start/End: Original strand, 23313690 - 23313849
Alignment:
Q  41 aggttagtggtcattcaatttccatgatcaatatgcattttcataaagctagggctagtggtcgattataaacatacaaaaagcattaaacacaaggtaa 140  Q
    ||||||||||||||||||| || | ||||||| ||||| ||||||||||||||| | || |||||| ||||||||||||||||||||||||| || ||||    
T  23313690 aggttagtggtcattcaatctctaagatcaatttgcatattcataaagctagggtttgtagtcgatgataaacatacaaaaagcattaaacataaagtaa 23313789  T
Q  141 tatgaataaagactaaacttttattgaatatttcaaaggagttcaacaaattagggttccca 202  Q
     |||||||||||||| ||||| |||| ||| |||||||||||| |||||||||| |||||||    
T  23313790 catgaataaagactagactttcattg-ata-ttcaaaggagtttaacaaattagagttccca 23313849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 6966945 - 6966745
Alignment:
Q  1 acttaggttaaacctattacctagttcagagttaaaagggagg-ttagtggtcattcaatttccatgatcaatatgcattttcataaagctagggctagt 99  Q
    ||||||||||||| |||||||||| ||||||| |||||  ||| |||||||||||| ||| || | ||||| | || || ||||||||||||||| ||||    
T  6966945 acttaggttaaacttattacctagatcagagtcaaaagccagggttagtggtcatttaatctctaagatcagtttgaatattcataaagctagggttagt 6966846  T
Q  100 ggtcgattataaacatacaaaaagcattaaacacaaggtaatatgaataaagactaaacttttattgaatatttcaaaggagttcaacaaattagggttc 199  Q
     ||| || ||||||||||||||||||| ||||| || ||||||||||| || |||| ||||| | || ||| ||||||||||||||||||||||||||||    
T  6966845 agtcaatgataaacatacaaaaagcataaaacataaagtaatatgaattaaaactagactttcaatg-ata-ttcaaaggagttcaacaaattagggttc 6966748  T
Q  200 cca 202  Q
    |||    
T  6966747 cca 6966745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 23760056 - 23760256
Alignment:
Q  1 acttaggttaaacctattacctagttcagagttaaaagggagg-ttagtggtcattcaatttccatgatcaatatgcattttcataaagctagggctagt 99  Q
    ||||||||||||||||||||||| ||| ||||||||||  ||| ||||||||||||||||||| ||||||||||||||| ||||  | ||||||  || |    
T  23760056 acttaggttaaacctattacctaattcggagttaaaagccagggttagtggtcattcaatttctatgatcaatatgcatattcacgacgctaggattaat 23760155  T
Q  100 ggtcgattataaacatacaaaaagcattaaacacaaggtaatatgaataaagactaaacttttattgaatatttcaaaggagttcaacaaattagggttc 199  Q
     ||| || |||||| |||| || | | ||| ||||| |||||||||||||| |||||||||| ||| |||  ||||||||||||||||||||||||||||    
T  23760156 agtctatcataaacgtacataaggtactaagcacaaagtaatatgaataaaaactaaactttcatt-aat-gttcaaaggagttcaacaaattagggttc 23760253  T
Q  200 cca 202  Q
    |||    
T  23760254 cca 23760256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 36843385 - 36843587
Alignment:
Q  1 acttaggttaaacctattacctagttcagagttaaaagggagg-ttagtggtcattcaatttccatgatcaatatgcattttcataaagctagggctagt 99  Q
    ||||||||||||| |||||||||| ||||||| |||||  ||| |||||||||||||||| || |  |||||| ||||| ||||||||||||||| ||||    
T  36843385 acttaggttaaacttattacctagatcagagtcaaaagccaggattagtggtcattcaatctctaacatcaatttgcatattcataaagctagggttagt 36843484  T
Q  100 ggtcgattataaaca-tacaaaaagcattaaacacaaggtaatatgaataaagactaaacttttattgaatatttcaaaggagttcaacaaattagggtt 198  Q
     ||| || ||||||| || |||||||||||||||||| |||||||||||||| |||| ||||| |||||    |||||| |||||||||||||||| |||    
T  36843485 agtcaatgataaacaatataaaaagcattaaacacaaagtaatatgaataaaaactagactttcattga--cattcaaa-gagttcaacaaattagagtt 36843581  T
Q  199 cccaca 204  Q
    ||||||    
T  36843582 cccaca 36843587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 294662 - 294462
Alignment:
Q  1 acttaggttaaacctattacctagttcagagttaaaagggagg-ttagtggtcattcaatttccatgatcaatatgcattttcataaagctagggctagt 99  Q
    ||||||||||||| |||||||||| ||||||| |||||  ||| |||||||||||||||| || | ||||||| ||||| |||||||| |||| | || |    
T  294662 acttaggttaaacttattacctagatcagagtcaaaagccagggttagtggtcattcaatctctaagatcaatttgcatattcataaaactagagttaat 294563  T
Q  100 ggtcgattataaacatacaaaaagcattaaacacaaggtaatatgaataaagactaaacttttattgaatatttcaaaggagttcaacaaattagggttc 199  Q
     ||  || |||||||||||| |||||||||||| || ||||||||||| || | || ||||| |||| ||| ||||||||||||||||||| ||||||||    
T  294562 agttcatgataaacatacaataagcattaaacataaagtaatatgaattaaaattatactttcattg-ata-ttcaaaggagttcaacaaactagggttc 294465  T
Q  200 cca 202  Q
    |||    
T  294464 cca 294462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 9765590 - 9765398
Alignment:
Q  1 acttaggttaaacctattacctagttcagagttaaaagggagg-ttagtggtcattcaatttccatgatcaatatgcattttcataaagctagggctagt 99  Q
    ||||| ||||||| ||||||||||  |||||| |||||  ||| ||||||||||||||||      ||||||| ||||| | ||||||||||||| || |    
T  9765590 acttaagttaaacttattacctagaccagagtcaaaagtcagggttagtggtcattcaatc-----gatcaatttgcatatccataaagctagggttaat 9765496  T
Q  100 ggtcgattataaacatacaaaaagcattaaacacaaggtaatatgaataaagactaaacttttattgaatatttcaaaggagttcaacaaattagggttc 199  Q
     ||||||  ||||||| ||||| |||||||||| || |||||||||||||| |||| |||||||||  ||| ||||||| ||||||||||||||||||||    
T  9765495 agtcgatggtaaacatgcaaaacgcattaaacataaagtaatatgaataaaaactagacttttatt-cata-ttcaaagaagttcaacaaattagggttc 9765398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 80 - 199
Target Start/End: Original strand, 35773058 - 35773176
Alignment:
Q  80 ttcataaagctagggctagtggtcgattataaaca-tacaaaaagcattaaacacaaggtaatatgaataaagactaaacttttattgaatatttcaaag 178  Q
    ||||||||| ||||| |||| || ||| ||||||| ||||||||||||| ||||||| |||||||||||||| |||||||||| |||||    ||||||     
T  35773058 ttcataaagttagggttagtagttgatgataaacaatacaaaaagcatttaacacaaagtaatatgaataaaaactaaactttcattga--cattcaaat 35773155  T
Q  179 gagttcaacaaattagggttc 199  Q
    |||||||||||||||| ||||    
T  35773156 gagttcaacaaattagagttc 35773176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 92 - 199
Target Start/End: Original strand, 3862435 - 3862540
Alignment:
Q  92 gggctagtggtcgattataaacatacaaaaagcattaaacacaaggtaatatgaataaagactaaacttttattgaatatttcaaaggagttcaacaaat 191  Q
    |||||||| ||| || ||||||||||| ||||||||||| ||||| | |||| |||||| |||| ||||| |||| |||||| |||||||||||||||||    
T  3862435 gggctagtagtcaataataaacatacacaaagcattaaaaacaagatgatataaataaaaactagactttcattg-atattt-aaaggagttcaacaaat 3862532  T
Q  192 tagggttc 199  Q
    ||||||||    
T  3862533 tagggttc 3862540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 130; Significance: 2e-67; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 26712793 - 26712991
Alignment:
Q  1 acttaggttaaacctattacctagttcagagttaaaagggagg-ttagtggtcattcaatttccatgatcaatatgcattttcataaagctagggctagt 99  Q
    ||||||||||||||||||||||||||||||||||||||  ||| ||||||||||||||||||| ||||||||||||||| ||||||||||||||| || |    
T  26712793 acttaggttaaacctattacctagttcagagttaaaagccagggttagtggtcattcaatttctatgatcaatatgcatattcataaagctagggttaat 26712892  T
Q  100 ggtcgattataaacatacaaaaagcattaaacacaaggtaatatgaataaagactaaacttttattgaatatttcaaaggagttcaacaaattagggttc 199  Q
     ||| || ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||    ||||||||||||||||||||||||||||    
T  26712893 agtcaatgataaacatacataaagcattaaacacaaggtaatatgaataaagactaaactttcattga--tgttcaaaggagttcaacaaattagggttc 26712990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 26982531 - 26982729
Alignment:
Q  1 acttaggttaaacctattacctagttcagagttaaaagggagg-ttagtggtcattcaatttccatgatcaatatgcattttcataaagctagggctagt 99  Q
    ||||||||||||||||||||||||||||||||||||||  ||| ||||||||||||||||||| ||||||||||||||| ||||||||||||||| || |    
T  26982531 acttaggttaaacctattacctagttcagagttaaaagccagggttagtggtcattcaatttctatgatcaatatgcatattcataaagctagggttaat 26982630  T
Q  100 ggtcgattataaacatacaaaaagcattaaacacaaggtaatatgaataaagactaaacttttattgaatatttcaaaggagttcaacaaattagggttc 199  Q
     ||| || ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||    ||||||||||||||||||||||||||||    
T  26982631 agtcaatgataaacatacataaagcattaaacacaaggtaatatgaataaagactaaactttcattga--tgttcaaaggagttcaacaaattagggttc 26982728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 33574886 - 33574686
Alignment:
Q  1 acttaggttaaacctattacctagttcagagttaaaagggagg-ttagtggtcattcaatttccatgatcaatatgcattttcataaagctagggctagt 99  Q
    ||||||||||||||||||||||| ||||||||||||||  ||| ||||||||||||||||||| ||||||||||||||| ||||||||||||||| || |    
T  33574886 acttaggttaaacctattacctaattcagagttaaaagttagggttagtggtcattcaatttctatgatcaatatgcatattcataaagctagggttaat 33574787  T
Q  100 ggtcgattataaacatacaaaaagcattaaacacaaggtaatatgaataaagactaaacttttattgaatatttcaaaggagttcaacaaattagggttc 199  Q
     ||| || ||||||||||| || |||||||||||||||||||||||||||| |||||||||| |||||    ||||||||||||||||||||||||||||    
T  33574786 agtctatcataaacatacataaggcattaaacacaaggtaatatgaataaaaactaaactttcattga--tgttcaaaggagttcaacaaattagggttc 33574689  T
Q  200 cca 202  Q
    |||    
T  33574688 cca 33574686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 4 - 202
Target Start/End: Original strand, 11989268 - 11989465
Alignment:
Q  4 taggttaaacctattacctagttcagagttaaaaggga-ggttagtggtcattcaatttccatgatcaatatgcattttcataaagctagggctagtggt 102  Q
    ||||||||||||| ||||||| ||||||| ||||| || |||||||||||||||||| || | ||||||| || || ||||||||||||||| |||| ||    
T  11989268 taggttaaacctaatacctagatcagagtcaaaagcgaaggttagtggtcattcaatctctaagatcaatttgtatattcataaagctagggttagtagt 11989367  T
Q  103 cgattataaacatacaaaaagcattaaacacaaggtaatatgaataaagactaaacttttattgaatatttcaaaggagttcaacaaattagggttccca 202  Q
    |||| ||||||||||||||||||||||||| || |||||||||||||| |||| ||||| |||| ||| |||||||||||||||||||||||||||||||    
T  11989368 cgatgataaacatacaaaaagcattaaacataaagtaatatgaataaaaactagactttcattg-ata-ttcaaaggagttcaacaaattagggttccca 11989465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 15532648 - 15532848
Alignment:
Q  1 acttaggttaaacctattacctagttcagagttaaaagggagg-ttagtggtcattcaatttccatgatcaatatgcattttcataaagctagggctagt 99  Q
    ||||||||||||||||||||||| ||||||||||||||  ||| ||||||||||||||||||| ||||||||||||||| ||||||| ||||||| || |    
T  15532648 acttaggttaaacctattacctaattcagagttaaaagccagggttagtggtcattcaatttctatgatcaatatgcatattcataacgctagggttaat 15532747  T
Q  100 ggtcgattataaacatacaaaaagcattaaacacaaggtaatatgaataaagactaaacttttattgaatatttcaaaggagttcaacaaattagggttc 199  Q
     ||| || |||||| |||| || ||||||| ||||| |||||| ||||||| |||||||||| |||||    ||||||||||||||||||||||||||||    
T  15532748 agtctatcataaacgtacataaggcattaagcacaaagtaataagaataaaaactaaactttcattga--tgttcaaaggagttcaacaaattagggttc 15532845  T
Q  200 cca 202  Q
    |||    
T  15532846 cca 15532848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 15542830 - 15543030
Alignment:
Q  1 acttaggttaaacctattacctagttcagagttaaaagggagg-ttagtggtcattcaatttccatgatcaatatgcattttcataaagctagggctagt 99  Q
    ||||||||||||||||||||||| ||||||||||||||  ||| ||||||||||||||||||| ||||||||||||||| ||||||| ||||||| || |    
T  15542830 acttaggttaaacctattacctaattcagagttaaaagccagggttagtggtcattcaatttctatgatcaatatgcatattcataacgctagggttaat 15542929  T
Q  100 ggtcgattataaacatacaaaaagcattaaacacaaggtaatatgaataaagactaaacttttattgaatatttcaaaggagttcaacaaattagggttc 199  Q
     ||| || |||||| |||| || ||||||| ||||| |||||| ||||||| |||||||||| |||||    ||||||||||||||||||||||||||||    
T  15542930 agtctatcataaacgtacataaggcattaagcacaaagtaataagaataaaaactaaactttcattga--tgttcaaaggagttcaacaaattagggttc 15543027  T
Q  200 cca 202  Q
    |||    
T  15543028 cca 15543030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 14616876 - 14617073
Alignment:
Q  1 acttaggttaaacctattacctagttcagagttaaaaggga-ggttagtggtcattcaatttccatgatcaatatgcattttcataaagctagggctagt 99  Q
    ||||||||||||| |||||||||| ||||||| |||||  | |||||||||||||||||| || | ||||||| ||||| ||||||||| ||||| ||||    
T  14616876 acttaggttaaacttattacctagatcagagtcaaaagccatggttagtggtcattcaatctctaagatcaatttgcatattcataaagttagggttagt 14616975  T
Q  100 ggtcgattataaacatacaaaaagcattaaacacaaggtaatatgaataaagactaaacttttattgaatatttcaaaggagttcaacaaattagggttc 199  Q
      ||||| ||||||||||||||||||||||||| || ||||||||||| || |||| ||||| |||| |||||| |||||||||||||||| ||||||||    
T  14616976 attcgatgataaacatacaaaaagcattaaacataaagtaatatgaattaaaactagactttcattg-atattt-aaaggagttcaacaaactagggttc 14617073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 22159542 - 22159342
Alignment:
Q  1 acttaggttaaacctattacctagttcagagttaaaagggagg-ttagtggtcattcaatttccatgatcaatatgcattttcataaagctagggctagt 99  Q
    |||||||||||||||||||||||| ||||||| |||||  ||| ||| |||||||||||| || |  |||||| || || |||||||||||| || ||||    
T  22159542 acttaggttaaacctattacctagatcagagtcaaaagccagggttaatggtcattcaatctctaacatcaatttgtatattcataaagctatggttagt 22159443  T
Q  100 ggtcgattataaaca-tacaaaaagcattaaacacaaggtaatatgaataaagactaaacttttattgaatatttcaaaggagttcaacaaattagggtt 198  Q
     |||||| ||||||| ||||||||||||||||||||| |||||||||||||| |||| ||||| |||||    |||||||||||||||||||||||||||    
T  22159442 agtcgatgataaacaatacaaaaagcattaaacacaaagtaatatgaataaaaactagactttcattga--cattcaaaggagttcaacaaattagggtt 22159345  T
Q  199 ccc 201  Q
    |||    
T  22159344 ccc 22159342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 34405646 - 34405446
Alignment:
Q  1 acttaggttaaacctattacctagttcagagttaaaagggagg-ttagtggtcattcaatttccatgatcaatatgcattttcataaagctagggctagt 99  Q
    ||||| ||||||| |||||||||| ||||||| |||||  ||| |||||||||||| ||| || | ||||| | ||||| ||||||||||||||| ||||    
T  34405646 acttaagttaaacttattacctagatcagagtcaaaagccagggttagtggtcatttaatctctaagatcagtttgcatattcataaagctagggttagt 34405547  T
Q  100 ggtcgattataaacatacaaaaagcattaaacacaaggtaatatgaataaagactaaacttttattgaatatttcaaaggagttcaacaaattagggttc 199  Q
     ||| || ||||||||||||||||||| ||||| || ||||||||||| || |||| ||||| | || ||| ||||||||||||||||||||||||||||    
T  34405546 agtcaatgataaacatacaaaaagcataaaacataaagtaatatgaattaaaactagactttcaatg-ata-ttcaaaggagttcaacaaattagggttc 34405449  T
Q  200 cca 202  Q
    |||    
T  34405448 cca 34405446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 3 - 167
Target Start/End: Original strand, 7650400 - 7650562
Alignment:
Q  3 ttaggttaaacctattacctagttcagagttaaaagggaggttagtggtcattcaatttccatgatcaatatgcattttcataaagctagggctagtggt 102  Q
    ||||||||||| ||||||||||||| |||| ||||| |  ||||||||| ||||||| || | ||||||| ||||| ||||||||| ||||| |||| ||    
T  7650400 ttaggttaaacttattacctagttctgagtcaaaagcg--gttagtggttattcaatctctaagatcaatttgcatattcataaagttagggttagtagt 7650497  T
Q  103 cgattataaacatacaaaaagcattaaacacaaggtaatatgaataaagactaaacttttattga 167  Q
    |||| ||||||||||||||| ||||||||| || |||| |||||||||||||| ||||| |||||    
T  7650498 cgatgataaacatacaaaaaacattaaacataaagtaacatgaataaagactagactttcattga 7650562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 119; Significance: 7e-61; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 39563958 - 39564153
Alignment:
Q  1 acttaggttaaacctattacctagttcagagttaaaagggagg-ttagtggtcattcaatttccatgatcaatatgcattttcataaagctagggctagt 99  Q
    |||||||||||||||||||||||||||||| |||||||  ||| ||||||||||||||||||| ||||||||||||||| ||||||||||||||| || |    
T  39563958 acttaggttaaacctattacctagttcaga-ttaaaagtcagggttagtggtcattcaatttctatgatcaatatgcatattcataaagctagggttaat 39564056  T
Q  100 ggtcgattataaacatacaaaaagcattaaacacaaggtaatatgaataaagactaaacttttattgaatatttcaaaggagttcaacaaattagggtt 198  Q
     ||| || ||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| |||  |||||||||||||||||||||||||||    
T  39564057 agtcaatgataaacatacataaagcattaaacacaaggtaatatgaataaagactaaactttcatt-aat-gttcaaaggagttcaacaaattagggtt 39564153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 22626760 - 22626960
Alignment:
Q  1 acttaggttaaacctattacctagttcagagttaaaagggagg-ttagtggtcattcaatttccatgatcaatatgcattttcataaagctagggctagt 99  Q
    ||||||||||||||||||||||| ||||||||||||||  ||| ||||||||||||||||||| ||||||||||||||| ||||||| ||||||| || |    
T  22626760 acttaggttaaacctattacctaattcagagttaaaagccagggttagtggtcattcaatttctatgatcaatatgcatattcataacgctagggttaat 22626859  T
Q  100 ggtcgattataaacatacaaaaagcattaaacacaaggtaatatgaataaagactaaacttttattgaatatttcaaaggagttcaacaaattagggttc 199  Q
     ||| || ||||||||||| || ||||||| ||||| |||||||||||||| |||||||||| |||||    ||||||||||||||||||||||||||||    
T  22626860 agtctatcataaacatacataaggcattaagcacaaagtaatatgaataaaaactaaactttcattga--tgttcaaaggagttcaacaaattagggttc 22626957  T
Q  200 cca 202  Q
    |||    
T  22626958 cca 22626960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 5 - 202
Target Start/End: Original strand, 11139021 - 11139216
Alignment:
Q  5 aggttaaacctattacctagttcagagttaaaagggagg-ttagtggtcattcaatttccatgatcaatatgcattttcataaagctagggctagtggtc 103  Q
    |||||||||||||||| || ||||||||||||||  ||| ||||||| ||||||||||| ||||||||||||||| ||||||| ||||||| || | ||     
T  11139021 aggttaaacctattac-tatttcagagttaaaagccagggttagtggccattcaatttctatgatcaatatgcatattcataacgctagggttaatagtt 11139119  T
Q  104 gattataaacatacaaaaagcattaaacacaaggtaatatgaataaagactaaacttttattgaatatttcaaaggagttcaacaaattagggttccca 202  Q
     || ||||||||||| || ||||||| ||||| |||||||||||||| |||||||||| |||||    |||||||||||||||||||||||||||||||    
T  11139120 tatcataaacatacataaggcattaagcacaaagtaatatgaataaaaactaaactttcattga--tgttcaaaggagttcaacaaattagggttccca 11139216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 13979284 - 13979088
Alignment:
Q  1 acttaggttaaacctattacctagttcagagttaaaagggaggtt-agtggtcattcaatttccatgatcaatatgcattttcataaagctagggctagt 99  Q
    ||||| |||||| |||||||||||||||||||  ||||  ||| | |||||||||||||| || | ||||||| ||||||| |||||||||||||  |||    
T  13979284 acttaagttaaaactattacctagttcagagtcgaaagtcagggtcagtggtcattcaatctctacgatcaatttgcattt-cataaagctagggtcagt 13979186  T
Q  100 ggtcgattataaacatacaaaaagcattaaacacaaggtaatatgaataaagactaaacttttattgaatatttcaaaggagttcaacaaattagggttc 199  Q
     |||||| ||||   ||| |||| ||||||||| || |||||||||| |||||||||||||| ||| ||   ||||||||||||||||||||||||||||    
T  13979185 agtcgatgataa---tacgaaaaacattaaacaaaaagtaatatgaaaaaagactaaactttcatttaaa--ttcaaaggagttcaacaaattagggttc 13979091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 47411988 - 47411841
Alignment:
Q  1 acttaggttaaacctattacctagttcagagttaaaagggaggt-tagtggtcattcaatttccatgatcaatatgcattttcataaagctagggctagt 99  Q
    |||||||||||||||||||||||| ||||||| |||||| |||  ||||| |||||||| ||| | ||||||| | ||| ||||  ||| ||| ||||||    
T  47411988 acttaggttaaacctattacctagatcagagtcaaaaggcaggactagtgatcattcaagttctaagatcaattttcatattcaagaagttagtgctagt 47411889  T
Q  100 ggtcgattataaacatacaaaaagcattaaacacaaggtaatatgaat 147  Q
     ||| || ||||||||||||| | ||||||||||||||||||||||||    
T  47411888 agtcaataataaacatacaaacaacattaaacacaaggtaatatgaat 47411841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 35366174 - 35366028
Alignment:
Q  1 acttaggttaaacctattacctagttcagagttaaaag-ggaggttagtggtcattcaatttccatgatcaatatgcattttcataaagctagggctagt 99  Q
    |||||||||||||||||||||||| ||||||| |||||   ||| |||||||||||||| ||  | ||||||| ||||  ||||  | ||||| ||||||    
T  35366174 acttaggttaaacctattacctagatcagagtcaaaagccaaggctagtggtcattcaagttttaagatcaatttgcacattcacgatgctagtgctagt 35366075  T
Q  100 ggtcgattataaacatacaaaaagcattaaacacaaggtaatatgaat 147  Q
     ||| || ||||||||| ||| | ||||||||||||||||||||||||    
T  35366074 agtcaataataaacata-aaacaacattaaacacaaggtaatatgaat 35366028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0500 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: scaffold0500
Description:

Target: scaffold0500; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 2489 - 2290
Alignment:
Q  1 acttaggttaaacctattacctagttcagagttaaaagggagg-ttagtggtcattcaatttccatgatcaatatgcattttcataaagctagggctagt 99  Q
    |||||||| ||||||||||||||||||||||| |||||  ||| |||||||||||| | |||| ||||||||||||||| ||||||||||||||| || |    
T  2489 acttaggtcaaacctattacctagttcagagtaaaaagccagggttagtggtcatttattttctatgatcaatatgcatattcataaagctagggttaat 2390  T
Q  100 ggtcgattataaacatacaaaaagcattaaacacaaggtaatatgaataaagactaaacttttattgaatatttcaaaggagttcaacaaattagggttc 199  Q
     || ||| ||||||||||| |||||||||||||||| ||||||||||||||||||||||||| |||||  | ||||||||||||||||||||||||||||    
T  2389 agttgatgataaacatacataaagcattaaacacaaagtaatatgaataaagactaaactttcattga--agttcaaaggagttcaacaaattagggttc 2292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 112; Significance: 1e-56; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 40017775 - 40017575
Alignment:
Q  1 acttaggttaaacctattacctagttcagagttaaaagggaggtt-agtggtcattcaatttccatgatcaatatgcattttcataaagctagggctagt 99  Q
    ||||||||||||| |||||||||||||| ||| |||||  ||| | |||||||||||||| || | ||||||| ||||| ||||||||| |||||  |||    
T  40017775 acttaggttaaacttattacctagttcaaagtcaaaagccagggtcagtggtcattcaatctctacgatcaatttgcatattcataaagatagggtcagt 40017676  T
Q  100 ggtcgattataaacatacaaaaagcattaaacacaaggtaatatgaataaagactaaacttttattgaatatttcaaaggagttcaacaaattagggttc 199  Q
     |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||  | ||||||||||||||||||||||||||||    
T  40017675 agtcgatgataaacatacaaaaagcattaaacacaaggtaatatgaataaagactaaactttcattga--aattcaaaggagttcaacaaattagggttc 40017578  T
Q  200 cca 202  Q
    |||    
T  40017577 cca 40017575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 16294697 - 16294550
Alignment:
Q  1 acttaggttaaacctattacctagttcagagttaaaagggag-gttagtggtcattcaatttccatgatcaatatgcattttcataaagctagggctagt 99  Q
    |||||||||||||||||||| |||||||||||||||||  || |||||||||||||||||||| ||||||||||||||| ||||||||||||||| ||||    
T  16294697 acttaggttaaacctattacatagttcagagttaaaagccagagttagtggtcattcaatttctatgatcaatatgcatattcataaagctagggttagt 16294598  T
Q  100 ggtcgattataaacatacaaaaagcattaaacacaaggtaatatgaat 147  Q
     |||||| ||||||||||| ||||||||||||||||||||||||||||    
T  16294597 agtcgatgataaacatacacaaagcattaaacacaaggtaatatgaat 16294550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 31528187 - 31527987
Alignment:
Q  1 acttaggttaaacctattacctagttcagagttaaaagggagg-ttagtggtcattcaatttccatgatcaatatgcattttcataaagctagggctagt 99  Q
    ||||||||||||||||||||||| ||||||||||||||  ||| ||||||||||||||||||| ||||||||||||||| ||||||| ||||||| || |    
T  31528187 acttaggttaaacctattacctaattcagagttaaaagccagggttagtggtcattcaatttctatgatcaatatgcatattcataacgctagggttaat 31528088  T
Q  100 ggtcgattataaacatacaaaaagcattaaacacaaggtaatatgaataaagactaaacttttattgaatatttcaaaggagttcaacaaattagggttc 199  Q
     ||| || |||||| |||| || ||||||| ||||| |||||| ||||||| |||||||||| |||||    ||||||||||||||||||||||||||||    
T  31528087 agtctatcataaacgtacataaggcattaagcacaaagtaataagaataaaaactaaactttcattga--tgttcaaaggagttcaacaaattagggttc 31527990  T
Q  200 cca 202  Q
    |||    
T  31527989 cca 31527987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 23673792 - 23673992
Alignment:
Q  1 acttaggttaaacctattacctagttcagagttaaaagggaggt-tagtggtcattcaatttccatgatcaatatgcattttcataaagctagggctagt 99  Q
    ||||||||||||| |||||||||| ||||||| |||||  |||  ||||||||||||||| || | ||||||| ||||| ||||||||| ||||| ||||    
T  23673792 acttaggttaaacttattacctagatcagagtcaaaagtcagggatagtggtcattcaatctctaagatcaatttgcatattcataaagttagggttagt 23673891  T
Q  100 ggtcgattataaacatacaaaaagcattaaacacaaggtaatatgaataaagactaaacttttattgaatatttcaaaggagttcaacaaattagggttc 199  Q
     |||||| ||||||||||||||||||||||||| || ||||||||||| || |||| ||||| |||| ||| |||||||||||||||||||||| |||||    
T  23673892 agtcgatgataaacatacaaaaagcattaaacataaagtaatatgaattaaaactagactttcattg-ata-ttcaaaggagttcaacaaattaaggttc 23673989  T
Q  200 cca 202  Q
    |||    
T  23673990 cca 23673992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 31626347 - 31626199
Alignment:
Q  1 acttaggttaaacctattacctagttcagagttaaaagggagg-ttagtggtcattcaatttccatgatcaatatgcattttcataaagctagggctagt 99  Q
    ||||||||||||||||||||||||||||||||||||||  ||| ||||||||||||||||||| || ||||||||| || ||||||||||||||| || |    
T  31626347 acttaggttaaacctattacctagttcagagttaaaagccagggttagtggtcattcaatttctataatcaatatgtatattcataaagctagggttaat 31626248  T
Q  100 ggtcgattataaacatacaaaaagcattaaacacaaggtaatatgaata 148  Q
     |||||| ||||||||||| ||| ||||||||||| |||||||||||||    
T  31626247 agtcgatgataaacatacataaaacattaaacacagggtaatatgaata 31626199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 36326720 - 36326522
Alignment:
Q  1 acttaggttaaacctattacctagttcagagttaaaagggagg-ttagtggtcattcaatttccatgatcaatatgcattttcataaagctagggctagt 99  Q
    ||||||||||||| |||||||||| ||| ||| |||||  ||| |||||||||||||||| || | |||| || ||||| ||||||||||||||| ||||    
T  36326720 acttaggttaaacttattacctagatcaaagtcaaaagccagggttagtggtcattcaatctctaagatcgatttgcatattcataaagctagggttagt 36326621  T
Q  100 ggtcgattataaacatacaaaaagcattaaacacaaggtaatatgaataaagactaaacttttattgaatatttcaaaggagttcaacaaattagggttc 199  Q
     |||||| ||||||  ||||||||||||||||| || ||||||||||| || |||| ||||| |||| ||| |||||| |||||||||||| ||||||||    
T  36326620 agtcgatgataaac--acaaaaagcattaaacataaagtaatatgaattaaaactagactttcattg-ata-ttcaaatgagttcaacaaactagggttc 36326525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 3 - 200
Target Start/End: Original strand, 32576136 - 32576331
Alignment:
Q  3 ttaggttaaacctattacctagttcagagttaaaagggaggtt-agtggtcattcaatttccatgatcaatatgcattttcataaagctagggctagtgg 101  Q
    ||||||||||| |||||||||||||| ||| |||||  ||| | |||| ||||||||| |  | ||||||| ||||| ||||||||| ||||   ||| |    
T  32576136 ttaggttaaacatattacctagttcatagtcaaaagacagggtcagtgatcattcaatctatacgatcaatttgcatattcataaagttaggatcagtag 32576235  T
Q  102 tcgattataaacatacaaaaagcattaaacacaaggtaatatgaataaagactaaacttttattgaatatttcaaaggagttcaacaaattagggttcc 200  Q
    || || |||||||| ||||||||||||| || || |||||||| |||||||||||||||| ||||||   |||||||||||||||||||||||||||||    
T  32576236 tcaatgataaacatgcaaaaagcattaa-caaaaagtaatatggataaagactaaactttcattgaaa--ttcaaaggagttcaacaaattagggttcc 32576331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 13709868 - 13709721
Alignment:
Q  1 acttaggttaaacctattacctagttcagagttaaaagggagg-ttagtggtcattcaatttccatgatcaatatgcattttcataaagctagggctagt 99  Q
    |||| |||||||| ||| |||||| ||||||| ||||   ||| |||||||||||||||| || | ||||||| | ||| ||||||||||||||| ||||    
T  13709868 acttgggttaaacttatcacctaggtcagagtcaaaatccagggttagtggtcattcaatctctaagatcaatttacatattcataaagctagggttagt 13709769  T
Q  100 ggtcgattataaacatacaaaaagcattaaacacaaggtaatatgaat 147  Q
     |||||| ||||||||||||||||||||||||| || |||||||||||    
T  13709768 agtcgatgataaacatacaaaaagcattaaacataaagtaatatgaat 13709721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 108; Significance: 3e-54; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 16883474 - 16883277
Alignment:
Q  1 acttaggttaaacctattacctagttcagagttaaaagggagg-ttagtggtcattcaatttccatgatcaatatgcattttcataaagctagggctagt 99  Q
    ||||||||||||| |||||||||||||||||| ||||| |||| |||||||||||||||| || | ||||||| ||||| ||||||||||||||| ||||    
T  16883474 acttaggttaaacttattacctagttcagagtcaaaagtgagggttagtggtcattcaatctctaagatcaatttgcatattcataaagctagggttagt 16883375  T
Q  100 ggtcgattataaacatacaaaaagcattaaacacaaggtaatatgaataaagactaaacttttattgaatatttcaaaggagttcaacaaattagggttc 199  Q
     |||||| ||||||||||||||||||||||| | || |||| |||||||||||||| ||||| |||| ||| ||||||||||||||||||||||||||||    
T  16883374 agtcgatgataaacatacaaaaagcattaaagataaagtaacatgaataaagactagactttcattg-ata-ttcaaaggagttcaacaaattagggttc 16883277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 22247356 - 22247158
Alignment:
Q  1 acttaggttaaacctattacctagttcagagttaaaagggagg-ttagtggtcattcaatttccatgatcaatatgcattttcataaagctagggctagt 99  Q
    |||||||||||||||||||||| |||||||||||||||  ||| ||||||||||||||||||| ||||||||||||||| |||||||||||| || || |    
T  22247356 acttaggttaaacctattacctggttcagagttaaaagccagggttagtggtcattcaatttctatgatcaatatgcatattcataaagctatggttaat 22247257  T
Q  100 ggtcgattataaacatacaaaaagcattaaacacaaggtaatatgaataaagactaaacttttattgaatatttcaaaggagttcaacaaattagggttc 199  Q
     ||| || ||||||||||| || |||||||||||||||||||||||||||| || ||||||| |||||    |||||| |||||||||||||||||||||    
T  22247256 agtctatcataaacatacataaggcattaaacacaaggtaatatgaataaaaaccaaactttcattga--tgttcaaaagagttcaacaaattagggttc 22247159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 22221521 - 22221323
Alignment:
Q  1 acttaggttaaacctattacctagttcagagttaaaagggagg-ttagtggtcattcaatttccatgatcaatatgcattttcataaagctagggctagt 99  Q
    ||||||||||||||||||||||  || ||| |||||||  ||| ||||||||||||||||||| ||||||||||||||| ||||||||||||||| || |    
T  22221521 acttaggttaaacctattaccttttttagatttaaaagccagggttagtggtcattcaatttctatgatcaatatgcatattcataaagctagggttaat 22221422  T
Q  100 ggtcgattataaacatacaaaaagcattaaacacaaggtaatatgaataaagactaaacttttattgaatatttcaaaggagttcaacaaattagggttc 199  Q
     ||| || ||||||||||| || |||||||||||||||||||||||||||| |||||||||| |||||    |||||| |||||||||||||||||||||    
T  22221421 agtctatcataaacatacataaggcattaaacacaaggtaatatgaataaaaactaaactttcattga--tgttcaaaagagttcaacaaattagggttc 22221324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 13017637 - 13017837
Alignment:
Q  1 acttaggttaaacctattacctagttcagagttaaaagggagg-ttagtggtcattcaatttccatgatcaatatgcattttcataaagctagggctagt 99  Q
    ||||||||||||||||||||||| ||||||||||| ||  ||| ||||||||||||||||||| ||||||||||||||| ||||||| ||||||| || |    
T  13017637 acttaggttaaacctattacctaattcagagttaagagccagggttagtggtcattcaatttctatgatcaatatgcatattcataacgctagggttaat 13017736  T
Q  100 ggtcgattataaacatacaaaaagcattaaacacaaggtaatatgaataaagactaaacttttattgaatat-ttcaaaggagttcaacaaattagggtt 198  Q
     ||| || |||||| |||| || ||||||| ||||| |||||||||||||| |||||||||| |||   ||| |||||||||||||||||||||||||||    
T  13017737 agtctatcataaacgtacataaggcattaagcacaaagtaatatgaataaaaactaaactttcatt---tatgttcaaaggagttcaacaaattagggtt 13017833  T
Q  199 ccca 202  Q
    ||||    
T  13017834 ccca 13017837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 20527610 - 20527810
Alignment:
Q  1 acttaggttaaacctattacctagttcagagttaaaagggagg-ttagtggtcattcaatttccatgatcaatatgcattttcataaagctagggctagt 99  Q
    ||||||||||||| |||||||||||||||||| |||||  ||| |||||||||||||||| || |  |||||| ||||| ||||||||||||||| |||     
T  20527610 acttaggttaaacttattacctagttcagagtcaaaagccagggttagtggtcattcaatctctaaaatcaatttgcatattcataaagctagggttagg 20527709  T
Q  100 ggtcgattataaacatacaaaaagcattaaacacaaggtaatatgaataaagactaaacttttattgaatatttcaaaggagttcaacaaattagggttc 199  Q
     |||||| ||||||||||||||||||||||| | || |||||||||||||||| || ||||| |||| ||| ||||||||||||||||| |||| |||||    
T  20527710 agtcgatgataaacatacaaaaagcattaaatataaagtaatatgaataaagattagactttcattg-ata-ttcaaaggagttcaacacattaaggttc 20527807  T
Q  200 cca 202  Q
    |||    
T  20527808 cca 20527810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 1838272 - 1838071
Alignment:
Q  1 acttaggttaaacctattacctagttcagagttaaaagggagg-ttagtggtcattcaatttccatgatcaatatgcattttcataaagctagggctagt 99  Q
    |||||||||||||||||||||||| ||||||| |||||  ||| |||||||||||||||| || |  |||||| ||||| ||||||||| ||||| ||||    
T  1838272 acttaggttaaacctattacctagatcagagtcaaaagtcagggttagtggtcattcaatctctaacatcaatttgcatattcataaagttagggttagt 1838173  T
Q  100 ggtcgattataaaca-tacaaaaagcattaaacacaaggtaatatgaataaagactaaacttttattgaatatttcaaaggagttcaacaaattagggtt 198  Q
     |||||| ||||||| ||||||||||||| ||||||| |||||||||||||| |||| ||||| |||||    ||||||||||||||| |||||||||||    
T  1838172 agtcgatgataaacaatacaaaaagcatttaacacaaagtaatatgaataaaaactagactttcattga--cattcaaaggagttcaataaattagggtt 1838075  T
Q  199 ccca 202  Q
    ||||    
T  1838074 ccca 1838071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 19665111 - 19665312
Alignment:
Q  1 acttaggttaaacctattacctagttcagagttaaaagggagg-ttagtggtcattcaatttccatgatcaatatgcattttcataaagctagggctagt 99  Q
    |||||||||||||||||||||||| ||||| |||||||  ||| |||||| ||||||||| || |  |||||| ||||| ||||||||||||||| ||||    
T  19665111 acttaggttaaacctattacctagatcagaattaaaagtcagggttagtgatcattcaatctctaacatcaatttgcatattcataaagctagggttagt 19665210  T
Q  100 ggtcgattataaaca-tacaaaaagcattaaacacaaggtaatatgaataaagactaaacttttattgaatatttcaaaggagttcaacaaattagggtt 198  Q
     |||||| ||||||| ||||||||||||| ||||||| |||||||||||||| |||| ||||| |||||    |||||| ||||||||||||||||||||    
T  19665211 agtcgatgataaacaatacaaaaagcatttaacacaaagtaatatgaataaaaactagactttcattga--cattcaaatgagttcaacaaattagggtt 19665308  T
Q  199 ccca 202  Q
    ||||    
T  19665309 ccca 19665312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 14790416 - 14790216
Alignment:
Q  1 acttaggttaaacctattacctagttcagagttaaaagggagg-ttagtggtcattcaatttccatgatcaatatgcattttcataaagctagggctagt 99  Q
    ||||||||||||| |||||||||| ||||||| |||||  ||| |||||||||||| ||| || | ||||| | ||||| ||||||||||||||| ||||    
T  14790416 acttaggttaaacttattacctagatcagagtcaaaagccagggttagtggtcatttaatctctaagatcagtttgcatattcataaagctagggttagt 14790317  T
Q  100 ggtcgattataaacatacaaaaagcattaaacacaaggtaatatgaataaagactaaacttttattgaatatttcaaaggagttcaacaaattagggttc 199  Q
     ||| || ||||||||||||||||||| ||||| || ||||||||||| || |||| ||||| | || ||| ||||||||||||||||||||||||||||    
T  14790316 agtcaatgataaacatacaaaaagcataaaacataaagtaatatgaattaaaactagactttcaatg-ata-ttcaaaggagttcaacaaattagggttc 14790219  T
Q  200 cca 202  Q
    |||    
T  14790218 cca 14790216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 14795444 - 14795244
Alignment:
Q  1 acttaggttaaacctattacctagttcagagttaaaagggagg-ttagtggtcattcaatttccatgatcaatatgcattttcataaagctagggctagt 99  Q
    ||||||||||||| |||||||||| ||||||| |||||  ||| |||||||||||| ||| || | ||||| | ||||| ||||||||||||||| ||||    
T  14795444 acttaggttaaacttattacctagatcagagtcaaaagccagggttagtggtcatttaatctctaagatcagtttgcatattcataaagctagggttagt 14795345  T
Q  100 ggtcgattataaacatacaaaaagcattaaacacaaggtaatatgaataaagactaaacttttattgaatatttcaaaggagttcaacaaattagggttc 199  Q
     ||| || ||||||||||||||||||| ||||| || ||||||||||| || |||| ||||| | || ||| ||||||||||||||||||||||||||||    
T  14795344 agtcaatgataaacatacaaaaagcataaaacataaagtaatatgaattaaaactagactttcaatg-ata-ttcaaaggagttcaacaaattagggttc 14795247  T
Q  200 cca 202  Q
    |||    
T  14795246 cca 14795244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 15534887 - 15534686
Alignment:
Q  1 acttaggttaaacctattacctagttcagagttaaaagggaggtt-agtggtcattcaatttccatgatcaatatgcattttcataaagctagggctagt 99  Q
    ||||| ||||||||||||||| || |||||||||||||  | ||| |||||||| ||||| || |  |||||| | ||| ||||||||||||||| ||||    
T  15534887 acttatgttaaacctattaccaagatcagagttaaaagtcaagtttagtggtcactcaatctctaacatcaattttcatattcataaagctagggttagt 15534788  T
Q  100 ggtcgattataaaca-tacaaaaagcattaaacacaaggtaatatgaataaagactaaacttttattgaatatttcaaaggagttcaacaaattagggtt 198  Q
     |||||| ||||||| ||||||||||||| ||||||| |||||||||||||| |||| ||||| |||||    |||||||||||||||||||||||||||    
T  15534787 agtcgatgataaacaatacaaaaagcatttaacacaaagtaatatgaataaaaactagactttcattga--cattcaaaggagttcaacaaattagggtt 15534690  T
Q  199 ccca 202  Q
    ||||    
T  15534689 ccca 15534686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 32704702 - 32704901
Alignment:
Q  1 acttaggttaaacctattacctagttcagagttaaaagggagg-ttagtggtcattcaatttccatgatcaatatgcattttcataaagctagggctagt 99  Q
    ||||||||||||| |||||| ||| ||||||| |||||  ||| |||||||||||| ||| || | ||||| | ||||| ||||||||||||||| ||||    
T  32704702 acttaggttaaacttattacttagatcagagtcaaaagccagggttagtggtcatttaatctctaagatcagtttgcatattcataaagctagggttagt 32704801  T
Q  100 ggtcgattataaacatacaaaaagcattaaacacaaggtaatatgaataaagactaaacttttattgaatatttcaaaggagttcaacaaattagggttc 199  Q
     ||| || ||||||||||||||| ||||||||| || ||||| ||| | || |||| ||||| |||| ||| ||||||||||||||||||||||||||||    
T  32704802 agtcaatgataaacatacaaaaaacattaaacataaagtaat-tgacttaaaactagactttcattg-ata-ttcaaaggagttcaacaaattagggttc 32704898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 43 - 199
Target Start/End: Complemental strand, 32427123 - 32426969
Alignment:
Q  43 gttagtggtcattcaatttccatgatcaatatgcattttcataaagctagggctagtggtcgattataaacatacaaaaagcattaaacacaaggtaata 142  Q
    ||||||||||||||||| || | |||| || |||||  || |||||| |||| ||||||||||| ||||||||||||||||||||||||| || ||||||    
T  32427123 gttagtggtcattcaatctctaagatcgatttgcatactcctaaagccagggttagtggtcgatgataaacatacaaaaagcattaaacataaagtaata 32427024  T
Q  143 tgaataaagactaaacttttattgaatatttcaaaggagttcaacaaattagggttc 199  Q
    | ||| || |||| ||||| |||| ||| ||||||||||||||||||| ||||||||    
T  32427023 taaattaaaactagactttcattg-ata-ttcaaaggagttcaacaaactagggttc 32426969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 160
Target Start/End: Original strand, 12983826 - 12983989
Alignment:
Q  1 acttaggttaaacctattacctagttcagagttaaaagggaggt-tagtggtcattcaatttccatgatcaatatgcattttcataaa-gctagggctag 98  Q
    ||||||||||||| |||||||||| ||||||| |||||  |||  |||||||||||||| ||| | ||||| | ||||| |||| ||| ||||| |||||    
T  12983826 acttaggttaaacatattacctagatcagagtcaaaagtcagggctagtggtcattcaagttctaagatcagtttgcatattcaaaaacgctagtgctag 12983925  T
Q  99 tggtcgatt--ataaacatacaaaaagcattaaacacaaggtaatatgaataaagactaaactt 160  Q
    |  || ||   ||||||||||| | |||||||||||||||||||||||||| || |||| ||||    
T  12983926 tactcaatataataaacatacagacagcattaaacacaaggtaatatgaattaaaactagactt 12983989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 147
Target Start/End: Original strand, 12980939 - 12981089
Alignment:
Q  1 acttaggttaaacctattacctagttcagagttaaaagggaggt-tagtggtcattcaatttccatgatcaatatgcattttcataaa-gctagggctag 98  Q
    ||||||||||||| |||||||||| ||||||| |||||  |||  |||||||||||||| ||| | ||||| | ||||| |||| ||| ||||| |||||    
T  12980939 acttaggttaaacatattacctagatcagagtcaaaagtcagggctagtggtcattcaagttctaagatcagtttgcatattcaaaaacgctagtgctag 12981038  T
Q  99 tggtcgatt--ataaacatacaaaaagcattaaacacaaggtaatatgaat 147  Q
    | ||| ||   ||||||||||| | | ||||||||||||||||||||||||    
T  12981039 tagtcaatataataaacatacagacaacattaaacacaaggtaatatgaat 12981089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 114 - 202
Target Start/End: Complemental strand, 15537966 - 15537881
Alignment:
Q  114 atacaaaaagcattaaacacaaggtaatatgaataaagactaaacttttattgaatatttcaaaggagttcaacaaattagggttccca 202  Q
    |||||||||||||||| || || ||| |||||||||| | || ||||| |||||    |||||||||||||||||||||||||||||||    
T  15537966 atacaaaaagcattaa-cataaagtactatgaataaaaattagactttcattgaca--ttcaaaggagttcaacaaattagggttccca 15537881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 106; Significance: 4e-53; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 12171780 - 12171582
Alignment:
Q  1 acttaggttaaacctattacctagttcagagttaaaagggagg-ttagtggtcattcaatttccatgatcaatatgcattttcataaagctagggctagt 99  Q
    ||||||||||||||||||||||| || ||| |||||||  ||| ||||||||||||||||||| ||||||||||||||| ||||||||||||||| || |    
T  12171780 acttaggttaaacctattacctaattaagaattaaaagccagggttagtggtcattcaatttctatgatcaatatgcatattcataaagctagggttaat 12171681  T
Q  100 ggtcgattataaacatacaaaaagcattaaacacaaggtaatatgaataaagactaaacttttattgaatatttcaaaggagttcaacaaattagggttc 199  Q
     ||| || ||||||||||| || |||||||||||||||||||||||||||| |||||||||| |||||    ||||||||||||||||||||| ||||||    
T  12171680 agtctatcataaacatacataaggcattaaacacaaggtaatatgaataaaaactaaactttcattga--tgttcaaaggagttcaacaaatttgggttc 12171583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 26063141 - 26063341
Alignment:
Q  1 acttaggttaaacctattacctagttcagagttaaaagggagg-ttagtggtcattcaatttccatgatcaatatgcattttcataaagctagggctagt 99  Q
    ||||||||||| |||||||||||| ||||||| |||||  ||| |||||||||||||||| || |  |||||| ||||| ||||||||||||||| || |    
T  26063141 acttaggttaa-cctattacctagatcagagtcaaaagccagggttagtggtcattcaatctctaacatcaatttgcatattcataaagctagggttatt 26063239  T
Q  100 ggtcgattataaaca-tacaaaaagcattaaacacaaggtaatatgaataaagactaaacttttattgaatatttcaaaggagttcaacaaattagggtt 198  Q
     |||||| ||||||| ||||||||||||||||||||| |||||||||||||| |||| ||||| |||||    |||||||||||||||||||| ||||||    
T  26063240 agtcgatgataaacaatacaaaaagcattaaacacaaagtaatatgaataaaaactagactttcattga--cattcaaaggagttcaacaaatcagggtt 26063337  T
Q  199 ccca 202  Q
    ||||    
T  26063338 ccca 26063341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 26060385 - 26060192
Alignment:
Q  1 acttaggttaaacctattacctagttcagagttaaaaggga-ggttagtggtcattcaatttccatgatcaatatgcattttcataaagctagggctagt 99  Q
    ||||| ||||||| |||||||||| ||||||| |||||  | |||||||||||||||||| || | ||||||| || || ||||| ||||||||| ||||    
T  26060385 acttaagttaaacatattacctagatcagagtcaaaagtcatggttagtggtcattcaatctctaagatcaatttgtatattcatgaagctagggttagt 26060286  T
Q  100 ggtcgattataaacatacaaaaagcattaaacacaaggtaatatgaataaagactaaacttttattgaatatttcaaaggagttcaacaaattagg 195  Q
     |||||| ||||||||||||||||||||||||| || ||||||||||||||  ||| |||||||||| ||| |||||| |||||||||||| ||||    
T  26060285 agtcgatgataaacatacaaaaagcattaaacataaagtaatatgaataaaatctagacttttattg-ata-ttcaaaagagttcaacaaactagg 26060192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 647651 - 647851
Alignment:
Q  1 acttaggttaaacctattacctagttcagagttaaaagggagg-ttagtggtcattcaatttccatgatcaatatgcattttcataaagctagggctagt 99  Q
    ||||||||||||| |||||||||| ||||||| |||||  ||| ||||||| |||| ||| || | ||||| | ||||| ||||||||||||||| ||||    
T  647651 acttaggttaaacttattacctagatcagagtcaaaagccagggttagtggccatttaatctctaagatcagtttgcatattcataaagctagggttagt 647750  T
Q  100 ggtcgattataaacatacaaaaagcattaaacacaaggtaatatgaataaagactaaacttttattgaatatttcaaaggagttcaacaaattagggttc 199  Q
     ||| || ||||||||||||||||||| ||||| || ||||||||||| || |||| ||||| | || ||| ||||||||||||||||||||||||||||    
T  647751 agtcaatgataaacatacaaaaagcataaaacataaagtaatatgaattaaaactagactttcaatg-ata-ttcaaaggagttcaacaaattagggttc 647848  T
Q  200 cca 202  Q
    |||    
T  647849 cca 647851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 650923 - 651117
Alignment:
Q  1 acttaggttaaacctattacctagttcagagttaaaagggagg-ttagtggtcattcaatttccatgatcaatatgcattttcataaagctagggctagt 99  Q
    ||||||||||||| |||||||||| ||||||| |||||  ||| ||||||| |||| ||| || | ||||| | ||||| ||||||||| ||||| |||     
T  650923 acttaggttaaacttattacctagatcagagtcaaaagccagggttagtggccatttaatctctaagatcagtttgcatattcataaagttagggttagg 651022  T
Q  100 ggtcgattataaacatacaaaaagcattaaacacaaggtaatatgaataaagactaaacttttattgaatatttcaaaggagttcaacaaattaggg 196  Q
       | || ||||||||||||||||||| ||||| || ||||||||||| || |||| ||||| | || ||| |||||||||||||||||||||||||    
T  651023 aaacaatgataaacatacaaaaagcataaaacataaagtaatatgaattaaaactagactttcaatg-ata-ttcaaaggagttcaacaaattaggg 651117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 2541682 - 2541483
Alignment:
Q  1 acttaggttaaacctattacctagttcagagttaaaagggag-gttagtggtcattcaatttccatgatcaatatgcattttcataaagctagggctagt 99  Q
    ||||||||||||| |   ||||||||||||||||||||   | ||||||||||| |||| ||| | |||||   ||||   | || |||||||| || ||    
T  2541682 acttaggttaaacattccacctagttcagagttaaaagccggtgttagtggtcaatcaagttctaagatcagcctgcaaacttatcaagctaggacttgt 2541583  T
Q  100 ggtcgattataaacatacaaaaagcattaaacacaaggtaatatgaataaagactaaacttttattgaatatttcaaaggagttcaacaaattagggttc 199  Q
     ||| || |||||||||| |||| ||||||||||||| ||||||||||||| |||| ||||||||||   || | |||||| ||||||||||||| ||||    
T  2541582 agtcaataataaacatacgaaaatcattaaacacaagataatatgaataaaaactagacttttattg---atatgaaaggaattcaacaaattagagttc 2541486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 7440 - 7639
Alignment:
Q  1 acttaggttaaacctattacctagttcagagttaaaagggagg-ttagtggtcattcaatttccatgatcaatatgcattttcataaagctagggctagt 99  Q
    ||||||||||||||||||||||||||| |||| |||||  ||| |||||||||| |||| ||| ||||||||||||||| ||||||||||||||| || |    
T  7440 acttaggttaaacctattacctagttctgagtaaaaagccagggttagtggtcaatcaaattctatgatcaatatgcatattcataaagctagggttaat 7539  T
Q  100 ggtcgattataaacatacaaaaagcattaaacacaaggtaatatgaataaagactaaacttttattgaatat-ttcaaaggagttcaacaaattagggtt 198  Q
     |||||| ||||||||||| |||||||||||| ||| |||||||||||||| |||||||||| |||   ||| |||||||||||||||||||||||||||    
T  7540 agtcgatgataaacatacataaagcattaaactcaaagtaatatgaataaaaactaaactttcatt---tatgttcaaaggagttcaacaaattagggtt 7636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 99; Significance: 6e-49; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 13493060 - 13492860
Alignment:
Q  1 acttaggttaaacctattacctagttcagagttaaaagggagg-ttagtggtcattcaatttccatgatcaatatgcattttcataaagctagggctagt 99  Q
    ||||||||||||| |||||||||| ||||||| |||||  ||| |||||||||||||||| || | ||||||| ||||| ||||||||||||||| ||||    
T  13493060 acttaggttaaacttattacctagatcagagtcaaaagccagggttagtggtcattcaatctctaagatcaatttgcatattcataaagctagggttagt 13492961  T
Q  100 ggtcgattataaacatacaaaaagcattaaacacaaggtaatatgaataaagactaaacttttattgaatatttcaaaggagttcaacaaattagggttc 199  Q
     |||||| ||||||||||||||||||||||||| || ||||||||||| || |||| ||||| |||| ||| ||||||||||||||||||| ||||||||    
T  13492960 agtcgatgataaacatacaaaaagcattaaacataaagtaatatgaattaaaactagactttcattg-ata-ttcaaaggagttcaacaaactagggttc 13492863  T
Q  200 cca 202  Q
    |||    
T  13492862 cca 13492860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 13495785 - 13495585
Alignment:
Q  1 acttaggttaaacctattacctagttcagagttaaaagggagg-ttagtggtcattcaatttccatgatcaatatgcattttcataaagctagggctagt 99  Q
    ||||||||||||| |||||||||| ||||||| |||||  ||| |||||||||||||||| || | ||||||| ||||| ||||||||||||||| ||||    
T  13495785 acttaggttaaacttattacctagatcagagtcaaaagctagggttagtggtcattcaatctctaagatcaatttgcatattcataaagctagggttagt 13495686  T
Q  100 ggtcgattataaacatacaaaaagcattaaacacaaggtaatatgaataaagactaaacttttattgaatatttcaaaggagttcaacaaattagggttc 199  Q
     |||||| ||||||||||||||||||||||||| || ||||||||||| || |||| ||||| |||| ||| ||||||||||||||||||| ||||||||    
T  13495685 agtcgatgataaacatacaaaaagcattaaacataaagtaatatgaattaaaactagactttcattg-ata-ttcaaaggagttcaacaaactagggttc 13495588  T
Q  200 cca 202  Q
    |||    
T  13495587 cca 13495585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 16190619 - 16190822
Alignment:
Q  1 acttaggttaaacctattacctagttcagagttaaaaggga-ggttagtggtcattcaatttccatgatcaatatgcattttcataaagctagggctagt 99  Q
    ||||||||||||| |||||||||| |||||||||||||  | ||||||||||||| |||| || | ||||||| ||||| |||||||||||| || ||||    
T  16190619 acttaggttaaacttattacctagatcagagttaaaagccaaggttagtggtcatccaatctctaggatcaatttgcatattcataaagctaaggttagt 16190718  T
Q  100 ggtcgattataaacatacaaaaagcattaaacacaaggtaatatgaataaagactaaacttttattgaatatt----tcaaaggagttcaacaaattagg 195  Q
     |||||| ||||||||||||||||||||||||| || ||||||| ||| || |||| ||||| |||| |||||    | |||||||||||||||||||||    
T  16190719 agtcgatgataaacatacaaaaagcattaaacataaagtaatataaattaaaactagactttcattg-atattcaaattaaaggagttcaacaaattagg 16190817  T
Q  196 gttcc 200  Q
    |||||    
T  16190818 gttcc 16190822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 27282555 - 27282755
Alignment:
Q  1 acttaggttaaacctattacctagttcagagttaaaagggagg-ttagtggtcattcaatttccatgatcaatatgcattttcataaagctagggctagt 99  Q
    ||||||||||||| |||||||||| ||||||| ||||   ||| |||||||||||||||| || | ||||||| | ||| ||||||||||||||| ||||    
T  27282555 acttaggttaaacttattacctagatcagagtcaaaatccagggttagtggtcattcaatctctaagatcaattttcatattcataaagctagggttagt 27282654  T
Q  100 ggtcgattataaacatacaaaaagcattaaacacaaggtaatatgaataaagactaaacttttattgaatatttcaaaggagttcaacaaattagggttc 199  Q
     |||||| ||||| |||||||||| |||||||| || ||||||||||| || |||| ||||| |||| ||| |||||||| |||||||||||||||||||    
T  27282655 agtcgatgataaagatacaaaaaggattaaacataaagtaatatgaattaaaactagactttcattg-ata-ttcaaaggtgttcaacaaattagggttc 27282752  T
Q  200 cca 202  Q
    |||    
T  27282753 cca 27282755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 34066142 - 34065942
Alignment:
Q  1 acttaggttaaacctattacctagttcagagttaaaagggagg-ttagtggtcattcaatttccatgatcaatatgcattttcataaagctagggctagt 99  Q
    ||||||||||||| |||||||||| ||||||| |||||  ||| |||||||||||| ||| || | ||||||| ||||| ||||||||||||||| ||||    
T  34066142 acttaggttaaacttattacctaggtcagagtcaaaagccagggttagtggtcatttaatctctaagatcaatttgcatattcataaagctagggttagt 34066043  T
Q  100 ggtcgattataaacatacaaaaagcattaaacacaaggtaatatgaataaagactaaacttttattgaatatttcaaaggagttcaacaaattagggttc 199  Q
     |||||| |||||| |||||||||||||||||| || ||||||||||| || |||| | ||| |||| ||| ||||||  |||||||||||||||| |||    
T  34066042 agtcgatgataaacgtacaaaaagcattaaacataacgtaatatgaattaaaactagattttcattg-ata-ttcaaaaaagttcaacaaattaggattc 34065945  T
Q  200 cca 202  Q
    |||    
T  34065944 cca 34065942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 22104817 - 22104956
Alignment:
Q  1 acttaggttaaacctattacctagttcagagttaaaagggagg-ttagtggtcattcaatttccatgatcaatatgcattttcataaagctagggctagt 99  Q
    |||||||||||||||||||| ||||||||||||||||   ||  ||||||||||||||||||| ||||||||||||||| ||||||||||||| | ||||    
T  22104817 acttaggttaaacctattacatagttcagagttaaaaaccagaattagtggtcattcaatttctatgatcaatatgcatattcataaagctagagttagt 22104916  T
Q  100 ggtcgattataaacatacaaaaagcattaaacacaaggta 139  Q
     |||||| |||||| |||| ||| ||||||||||||||||    
T  22104917 agtcgatgataaacctacacaaaacattaaacacaaggta 22104956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 42 - 202
Target Start/End: Complemental strand, 1936383 - 1936225
Alignment:
Q  42 ggttagtggtcattcaatttccatgatcaatatgcattttcataaagctagggctagtggtcgattataaacatacaaaaagcattaaacacaaggtaat 141  Q
    |||||||||||||| ||| || | ||||||| | ||| ||||||||| ||||| |||| |||||| ||||||||||||||||||||||||| || |||||    
T  1936383 ggttagtggtcatttaatctctaagatcaattttcatattcataaagttagggttagtagtcgatgataaacatacaaaaagcattaaacataaagtaat 1936284  T
Q  142 atgaataaagactaaacttttattgaatatttcaaaggagttcaacaaattagggttccca 202  Q
    |||||| || |||| ||||  |||| ||| |||||||||||||||||||||| ||||||||    
T  1936283 atgaattaaaactagacttccattg-ata-ttcaaaggagttcaacaaattatggttccca 1936225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 32506302 - 32506501
Alignment:
Q  1 acttaggttaaacctattacctagttcagagttaaaagggagg-ttagtggtcattcaatttccatgatcaatatgcattttcataaagctagggctagt 99  Q
    ||||| ||||||| |||||||||| ||||||| |||||  ||| |||||||||||||||| || | |||| || ||||| ||||||||||||||| ||||    
T  32506302 acttaagttaaacttattacctagatcagagtcaaaagtcagggttagtggtcattcaatctctaagatcgatttgcatattcataaagctagggttagt 32506401  T
Q  100 ggtcgattataaacatacaaaaagcattaaacacaaggtaatatgaataaagactaaacttttattgaatatt-tcaaaggagttcaacaaattagggtt 198  Q
     |||||| ||||||||||||||| ||||||||| || |||||||   | || |||| ||||| |||| |||||   |||||||||||||||| |||||||    
T  32506402 agtcgatgataaacatacaaaaaacattaaacataaagtaatat---ttaaaactagactttcattg-atattcaaaaaggagttcaacaaactagggtt 32506497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 108 - 202
Target Start/End: Complemental strand, 10759811 - 10759719
Alignment:
Q  108 ataaacatacaaaaagcattaaacacaaggtaatatgaataaagactaaacttttattgaatatttcaaaggagttcaacaaattagggttccca 202  Q
    ||||||||||||||||||| ||||| || ||||||||||| || |||| ||||| | ||| |||| |||||||||||||||||||||||||||||    
T  10759811 ataaacatacaaaaagcataaaacataaagtaatatgaattaaaactagactttcaatga-tatt-caaaggagttcaacaaattagggttccca 10759719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 23990536 - 23990735
Alignment:
Q  1 acttaggttaaacctattacctagttcagagttaaaaggga-ggttagtggtcattcaatttc--cat--gatcaatatgcattttcataaagctagggc 95  Q
    ||||||||||||| |||||||||| ||||||| |||||  | |||||||||||||||||| ||   ||  ||||||| ||||| |||||||||||         
T  23990536 acttaggttaaacttattacctagatcagagtcaaaagccagggttagtggtcattcaatctcttaattagatcaatttgcatattcataaagct----- 23990630  T
Q  96 tagtggtcgattataaacatacaaaaagcattaaacacaaggtaatatgaataaagactaaacttttattgaatatttcaaaggagttcaacaaattagg 195  Q
    |||| ||| || ||||||||||||||| |||| || | ||  |||| ||||| || |||| || ||| || |||| |||| ||||||||||||||||||     
T  23990631 tagtagtcaatgataaacatacaaaaaacattgaagataatataatgtgaattaaaactagac-tttcttaaata-ttcagaggagttcaacaaattagt 23990728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 15297130 - 15296980
Alignment:
Q  1 acttaggttaaacctattacctagttcagagttaaaagggag-gttagtggtcattcaatttccatgatcaatatgcattttcataaa-gctagggctag 98  Q
    |||||||||||| ||||||||||| ||||| | |||||  || | |||||||||||||| ||| | ||||||| ||||| |||| ||| ||||| |||||    
T  15297130 acttaggttaaaactattacctagatcagattcaaaagccagagctagtggtcattcaagttctaagatcaatttgcatattcaaaaatgctagtgctag 15297031  T
Q  99 tggtc--gattataaacatacaaaaagcattaaacacaaggtaatatgaat 147  Q
    | | |   || ||||||||  ||| | ||||||||||||||||||||||||    
T  15297030 tagacaatataataaacattgaaacaacattaaacacaaggtaatatgaat 15296980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 160
Target Start/End: Original strand, 22456938 - 22457100
Alignment:
Q  1 acttaggttaaacctattacctagttcagagttaaaaggga-ggttagtggtcattcaatttccatgatcaatatgcattttcataaa-gctagggctag 98  Q
    |||||||||||||||||||||||   |||||| |||||  | || |||||||||||||| ||| | ||||| | ||||| |||| ||| ||||| |||||    
T  22456938 acttaggttaaacctattacctaaaacagagtcaaaagtcagggctagtggtcattcaagttctaagatcagtttgcatattcaaaaacgctagtgctag 22457037  T
Q  99 tggtc--gattataaacatacaaaaagcattaaacacaaggtaatatgaataaagactaaactt 160  Q
    | |||   || ||||||||||||| | |||| |||| |||||||||||||| || |||| ||||    
T  22457038 tagtcaatataataaacatacaaacaacattgaaca-aaggtaatatgaattaaaactagactt 22457100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 160
Target Start/End: Complemental strand, 49147797 - 49147745
Alignment:
Q  108 ataaacatacaaaaagcattaaacacaaggtaatatgaataaagactaaactt 160  Q
    ||||||||||||| | |||||||||||||||||||||||| || |||| ||||    
T  49147797 ataaacatacaaacaacattaaacacaaggtaatatgaattaaaactagactt 49147745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0567 (Bit Score: 91; Significance: 4e-44; HSPs: 1)
Name: scaffold0567
Description:

Target: scaffold0567; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 6258 - 6457
Alignment:
Q  1 acttaggttaaacctattacctagttcagagttaaaagggagg-ttagtggtcattcaatttccatgatcaatatgcattttcataaagctagggctagt 99  Q
    |||||| |||||| |||||||||||||||||| |||||  ||| |||||||||||||||| || | ||||||| ||||| ||||||||||||||| ||||    
T  6258 acttagattaaacttattacctagttcagagtcaaaagtcagggttagtggtcattcaatctctaagatcaatttgcatattcataaagctagggttagt 6357  T
Q  100 ggtcgattataaacatacaaaaagcattaaacacaaggtaatatgaataaagactaaacttttattgaatatttcaaaggagttcaacaaattagggttc 199  Q
     |||||| ||||||||||||||||||||||||| || |||| ||||||||| |||  ||||| |||| ||| |||||||||||||||||||||| |||||    
T  6358 agtcgatgataaacatacaaaaagcattaaacataaagtaacatgaataaacact-gactttcattg-ata-ttcaaaggagttcaacaaattaaggttc 6454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 81; Significance: 4e-38; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 12575747 - 12575945
Alignment:
Q  1 acttaggttaaacctattacctagttcagagttaaaaggga-ggttagtggtcattcaatttccatgatcaatatgcattttcataaagctagggctagt 99  Q
    ||||| |||||||||||||||| | ||| ||| |||||  | ||||||| |||||||||| || | ||||||| ||||| ||||||||| ||||||||||    
T  12575747 acttatgttaaacctattaccttgatcaaagtcaaaagccaaggttagtagtcattcaatctctaagatcaatttgcatattcataaagttagggctagt 12575846  T
Q  100 ggtcgattataaacatacaaaaagcattaaacacaaggtaatatgaataaagactaaacttttattgaatatttcaaaggagttcaacaaattagggttc 199  Q
     || ||| ||||| ||||||||||| || ||||||| |||||||||||||| |||| ||||| |||| ||| ||||||||||||||||||||||||||||    
T  12575847 tgttgatgataaagatacaaaaagcgttgaacacaaagtaatatgaataaaaactagactttcattg-ata-ttcaaaggagttcaacaaattagggttc 12575944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 3 - 193
Target Start/End: Complemental strand, 44008097 - 44007909
Alignment:
Q  3 ttaggttaaacctattacctagttcagagttaaaagggag-gttagtggtcattcaatttccatgatcaatatgcattttcataaagctagggctagtgg 101  Q
    ||||||||||| |||||||||||||||| | |||||  || || |||| ||||||||| || | | ||||| |||||||||||||||||||||  | | |    
T  44008097 ttaggttaaacttattacctagttcagaatcaaaagccagagtcagtgttcattcaatctctacggtcaatttgcattttcataaagctagggtcaatag 44007998  T
Q  102 tcgattataaacatacaaaaagcattaaacacaaggtaatatgaataaagactaaacttttattgaatatttcaaaggagttcaacaaatta 193  Q
    ||||| ||||||||| ||||||||||||||| |  |||||| |||||||||||||||||| |||||  | ||||||||||||||||||||||    
T  44007997 tcgatgataaacata-aaaaagcattaaacaaagagtaataagaataaagactaaactttaattga--aattcaaaggagttcaacaaatta 44007909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 96 - 196
Target Start/End: Original strand, 41779220 - 41779318
Alignment:
Q  96 tagtggtcgattataaacatacaaaaagcattaaacacaaggtaatatgaataaagactaaacttttattgaatatttcaaaggagttcaacaaattagg 195  Q
    ||||||||||| ||||||||||||||||||||||||| || |||| ||| |||||||||||||||| |||| |||||| |||||||||||||||||||||    
T  41779220 tagtggtcgatgataaacatacaaaaagcattaaacataaagtaacatggataaagactaaactttcattg-atattt-aaaggagttcaacaaattagg 41779317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 13096819 - 13096686
Alignment:
Q  1 acttaggttaaacctattacctagttcagagttaaaagg---gaggttagtggtcattcaatttccatgatcaatatgcattttcataaagctagggcta 97  Q
    |||||| |||||| |||||||||| ||||||||||||||   |  ||||||| ||||||||| || | ||||||| ||||| ||||||||||||||| ||    
T  13096819 acttagcttaaacttattacctaggtcagagttaaaaggccaggagttagtgatcattcaatctctaagatcaatttgcatattcataaagctagggata 13096720  T
Q  98 gtggtcgattataaacatacaaaaagcattaaaca 132  Q
    || |||||| |||||||||| ||||||||||||||    
T  13096719 gtagtcgatgataaacatac-aaaagcattaaaca 13096686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0352 (Bit Score: 79; Significance: 6e-37; HSPs: 1)
Name: scaffold0352
Description:

Target: scaffold0352; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 3051 - 3248
Alignment:
Q  1 acttaggttaaacctattacctagttcagagttaaaaggga-ggttagtggtcattcaatttccatgatcaatatgcattttcataaa-gctagggctag 98  Q
    ||||||||||||| ||||||||||||||||||| ||||  | |||||||| |||||||| |||  |||||||| ||||| |||||||| ||||||| |||    
T  3051 acttaggttaaacgtattacctagttcagagttgaaagccatggttagtgttcattcaaattctgtgatcaatttgcatattcataaaagctagggttag 3150  T
Q  99 tggtcgattataaacatacaaaaagcattaaacaca---aggtaatatgaataaagactaaacttttattgaatatttcaaaggagttcaacaaattagg 195  Q
    | |||||| ||||||||||||||| |||||||||||   | ||||||||| ||||||||||||||| ||| |  | |||||| |||||||||||||||||    
T  3151 tagtcgatgataaacatacaaaaaacattaaacacaaagaagtaatatgagtaaagactaaactttcattta--aattcaaatgagttcaacaaattagg 3248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0665 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: scaffold0665
Description:

Target: scaffold0665; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 92 - 292
Alignment:
Q  1 acttaggttaaacctattacctagttcagagttaaaagggagg-ttagtggtcattcaatttccatgatcaatatgcattttcataaagctagggctagt 99  Q
    ||||||||||||| |||||||||| ||||||| ||||   ||| ||||| |||||| ||| || | ||||| | ||||| ||||||||||||||| ||||    
T  92 acttaggttaaacttattacctagatcagagtcaaaaaccagggttagtagtcatttaatctctaagatcagtttgcatattcataaagctagggttagt 191  T
Q  100 ggtcgattataaacatacaaaaagcattaaacacaaggtaatatgaataaagactaaacttttattgaatatttcaaaggagttcaacaaattagggttc 199  Q
     ||| || ||||||||||||||||||| ||||| || ||||||||||| || |||| ||||| | || ||| ||||||||||||||||||||||||||||    
T  192 agtcaatgataaacatacaaaaagcataaaacataaagtaatatgaattaaaactagactttcaatg-ata-ttcaaaggagttcaacaaattagggttc 289  T
Q  200 cca 202  Q
    |||    
T  290 cca 292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0264 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: scaffold0264
Description:

Target: scaffold0264; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 24631 - 24722
Alignment:
Q  1 acttaggttaaacctattacctagttcagagttaaaagggagg-ttagtggtcattcaatttccatgatcaatatgcattttcataaagcta 91  Q
    |||||||||||||||||||||| |||||||||||||||  ||| ||||||||||||||||||| ||||||||||||||| ||||||||||||    
T  24631 acttaggttaaacctattacctggttcagagttaaaagccagggttagtggtcattcaatttctatgatcaatatgcatattcataaagcta 24722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0440 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0440
Description:

Target: scaffold0440; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 9660 - 9606
Alignment:
Q  1 acttaggttaaacctattacctagttcagagttaaaaggga-ggttagtggtcat 54  Q
    ||||||||||||||||||||||| ||||||||||||||  | |||||||||||||    
T  9660 acttaggttaaacctattacctaattcagagttaaaagccagggttagtggtcat 9606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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