View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0733_low_92 (Length: 281)
Name: NF0733_low_92
Description: NF0733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0733_low_92 |
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| [»] scaffold0672 (1 HSPs) |
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| [»] scaffold0093 (1 HSPs) |
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Alignment Details
Target: scaffold0672 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: scaffold0672
Description:
Target: scaffold0672; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 53 - 241
Target Start/End: Complemental strand, 6716 - 6528
Alignment:
| Q |
53 |
atcatcaaaattcacaaaaagtcataattcacaataaccatttattccaataatttaaaagatgaagttagagcttaatttatgaaagattctatccccc |
152 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
6716 |
atcatcaaaattcacaaaaagtcataattcacaataagcatttattccaataatttaaaagatgaagttagatcttaatttatgaaagattctatccccg |
6617 |
T |
|
| Q |
153 |
ttacctctaggattctctagccccaactatggcttcaatttagctcccccaagtctctagcctcttcctatcttcaagcttttcatctc |
241 |
Q |
| |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6616 |
ttacctctaggattctctagcaccaactatggcttcaatttagctcccccaagtctctagcctcttcctatcttcaagcttttcatctc |
6528 |
T |
|
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Target: chr6 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 52 - 163
Target Start/End: Complemental strand, 12463634 - 12463521
Alignment:
| Q |
52 |
catcatcaaaattcacaaaaagtcataattcacaataaccatttat-tccaataatttaaaagatgaagttagagcttaatttatgaaa-gattctatcc |
149 |
Q |
| |
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|||||| |||| ||||||||| |||||||||||||||| | |||| || |||||| |||||||||||||| |||| |||| |||||| || ||||||| |
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| T |
12463634 |
catcattaaaaatcacaaaaactcataattcacaataatcgcttatgacccataattgaaaagatgaagttatagctcaattgatgaaatgaatctatcc |
12463535 |
T |
|
| Q |
150 |
cccttacctctagg |
163 |
Q |
| |
|
|||||||||||||| |
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|
| T |
12463534 |
cccttacctctagg |
12463521 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 52 - 163
Target Start/End: Original strand, 13457134 - 13457247
Alignment:
| Q |
52 |
catcatcaaaattcacaaaaagtcataattcacaataaccatttatt-ccaataatttaaaagatgaagttagagcttaatttatgaaa-gattctatcc |
149 |
Q |
| |
|
|||||| |||| |||||||||||||||||||||||||| || ||| || | |||| ||||||||| |||| ||||||||| |||||| || ||||||| |
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| T |
13457134 |
catcataaaaaatcacaaaaagtcataattcacaataagcacttacgacccaaaattgaaaagatgacgttatagcttaattgatgaaaagaatctatcc |
13457233 |
T |
|
| Q |
150 |
cccttacctctagg |
163 |
Q |
| |
|
|||||||||||||| |
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|
| T |
13457234 |
cccttacctctagg |
13457247 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 177 - 234
Target Start/End: Original strand, 24194486 - 24194543
Alignment:
| Q |
177 |
aactatggcttcaatttagctcccccaagtctctagcctcttcctatcttcaagcttt |
234 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||| |||| ||||||| |
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|
| T |
24194486 |
aactatggcttcactttagctcccccaagtctctagcctcttcctctctttaagcttt |
24194543 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 89
Target Start/End: Original strand, 26868028 - 26868065
Alignment:
| Q |
52 |
catcatcaaaattcacaaaaagtcataattcacaataa |
89 |
Q |
| |
|
||||||||||| ||||||||| |||||||||||||||| |
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|
| T |
26868028 |
catcatcaaaaatcacaaaaaatcataattcacaataa |
26868065 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 52 - 163
Target Start/End: Complemental strand, 14861234 - 14861121
Alignment:
| Q |
52 |
catcatcaaaattcacaaaaagtcataattcacaataaccatttat-tccaataatttaaaagatgaagttagagcttaatttatgaaa-gattctatcc |
149 |
Q |
| |
|
|||||| |||| |||||||||||| ||||||||||||| || |||| || |||||| |||||||||||||| ||||||||| || ||| || ||||||| |
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|
| T |
14861234 |
catcattaaaaatcacaaaaagtcttaattcacaataatcacttatgacccataattaaaaagatgaagttatagcttaattgataaaaggaatctatcc |
14861135 |
T |
|
| Q |
150 |
cccttacctctagg |
163 |
Q |
| |
|
|||||| ||||||| |
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|
| T |
14861134 |
cccttagctctagg |
14861121 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0093 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0093
Description:
Target: scaffold0093; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 52 - 163
Target Start/End: Original strand, 51983 - 52096
Alignment:
| Q |
52 |
catcatcaaaattcacaaaaagtcataattcacaataaccatttat-tccaataatttaaaagatgaagttagagcttaatttatgaaa-gattctatcc |
149 |
Q |
| |
|
||||||||||| ||||||||| |||||||||||||||| || |||| || ||||| ||||| ||| ||| ||||||||| |||||| || ||||||| |
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|
| T |
51983 |
catcatcaaaaatcacaaaaaatcataattcacaataatcacttatgacccataatcacaaagaagaaattatagcttaattgatgaaatgaatctatcc |
52082 |
T |
|
| Q |
150 |
cccttacctctagg |
163 |
Q |
| |
|
|| ||||||||||| |
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|
| T |
52083 |
cctttacctctagg |
52096 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 58 - 139
Target Start/End: Original strand, 25263431 - 25263513
Alignment:
| Q |
58 |
caaaattcacaaaaagtcataattcacaataaccatttat--tccaataatttaaaagatgaagttagagcttaatttatgaaa |
139 |
Q |
| |
|
||||| |||||||||||||||||||||||||| ||||||| ||| |||| | |||||||||| ||| ||||||||| |||||| |
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|
| T |
25263431 |
caaaaatcacaaaaagtcataattcacaataatcatttatgatcc-ataactgaaaagatgaaattatagcttaattgatgaaa |
25263513 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 162
Target Start/End: Original strand, 12518571 - 12518675
Alignment:
| Q |
59 |
aaaattcacaaaaagtcataattcacaa-taaccatttattccaataatttaaaagatgaagttagagcttaatttatgaaag-attctatcccccttac |
156 |
Q |
| |
|
||||||||||||| |||| ||||||||| ||| || |||||| | ||||| |||| |||||| | ||||||||| |||| || | |||||||||||||| |
|
|
| T |
12518571 |
aaaattcacaaaa-gtcacaattcacaaataaacacttattcaactaattgaaaatatgaaggtttagcttaattgatgataggaatctatcccccttac |
12518669 |
T |
|
| Q |
157 |
ctctag |
162 |
Q |
| |
|
|||||| |
|
|
| T |
12518670 |
ctctag |
12518675 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 52 - 161
Target Start/End: Original strand, 20148779 - 20148889
Alignment:
| Q |
52 |
catcatcaaaattcacaaaaagtcataattcacaataaccatttat-tccaataatttaaaagatgaagttagagcttaatttatgaaa-gattctatcc |
149 |
Q |
| |
|
|||||| |||| |||||||||||||||||||||||||| || |||| || ||||| |||||| ||| ||| | ||||||| |||||| || ||||| | |
|
|
| T |
20148779 |
catcataaaaaatcacaaaaagtcataattcacaataagcacttatgacccataatcaaaaagaagaaattatatcttaattgatgaaaggaatctat-c |
20148877 |
T |
|
| Q |
150 |
cccttacctcta |
161 |
Q |
| |
|
|||||||||||| |
|
|
| T |
20148878 |
cccttacctcta |
20148889 |
T |
|
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