View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0733_low_94 (Length: 272)
Name: NF0733_low_94
Description: NF0733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0733_low_94 |
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Alignment Details
Target: chr6 (Bit Score: 95; Significance: 2e-46; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 58 - 156
Target Start/End: Complemental strand, 26233940 - 26233842
Alignment:
| Q |
58 |
aaatattttttctgattcttgcttgatcttcataacttgactatgaattggtatacccttttgtcctacaccttcatccttcttgttattcttcatgtt |
156 |
Q |
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| T |
26233940 |
aaatattttctctgattcttgcttgatcttcataacttgactatgaattggtatacccttttgtcctacaccttcatccttcttgttattcttcatgtt |
26233842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 188 - 228
Target Start/End: Complemental strand, 26233770 - 26233730
Alignment:
| Q |
188 |
ttttcttcacacaaagtttccaagccctaaatatttttctt |
228 |
Q |
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| T |
26233770 |
ttttcttcacacaaagtttccaagccctaaatatttttctt |
26233730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 196 - 231
Target Start/End: Complemental strand, 26233833 - 26233798
Alignment:
| Q |
196 |
acacaaagtttccaagccctaaatatttttcttctc |
231 |
Q |
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| T |
26233833 |
acacaaagtttccaagccctaaatatttttcttctc |
26233798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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