View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0734_high_1 (Length: 446)
Name: NF0734_high_1
Description: NF0734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0734_high_1 |
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| [»] scaffold0286 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 311; Significance: 1e-175; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 30 - 431
Target Start/End: Complemental strand, 3961464 - 3961069
Alignment:
| Q |
30 |
agattgaggttataaagcattgggaagaaaaactcaacgtcaaatgatggagaaatccacaaaatatggaatagaaactgattcgccaacatgtctttcc |
129 |
Q |
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| T |
3961464 |
agattgaggttataaagcagtgggaagaaaaactcaacgtcaaatgatggagaaatccacaaaatatggaatagaaactgattcaccaacatgtctttcc |
3961365 |
T |
|
| Q |
130 |
ttagtatattaaaaaacaagattaattcttgatacctaaaattg-gttagagtaagttagtgagttagagttagttactcatgctagtttaattaatcac |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||| || ||||| |||| | || |||||||||||||||| |||||||||||||||||| |
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| T |
3961364 |
ttagtatattaaaaaacaagattaattcttgatacctaaatttttgttagt-taagatggt----tagagttagttactcaagctagtttaattaatcac |
3961270 |
T |
|
| Q |
229 |
actagttagtataattgaggtctataaataagaccatacatgtactcatttctcattcttttattagtttatccattcaactatgattttttatgagtat |
328 |
Q |
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| T |
3961269 |
attagttagtataattgaggtctataaataagaccatatatgtactcatttctcattcttttattagtttatccattcaactatgattttt--tgagtat |
3961172 |
T |
|
| Q |
329 |
tattatcataaatacacatatgttctttgtcttgcttagatttatcatttttctcccttcgattccatgattctcaacattattttaatccatcctattc |
428 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3961171 |
tattatcataaatacacatatgttctttgtcttgcttagatctatcagttttctcccttcgattccatgattctcaacattattttaatccatcctattc |
3961072 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 231 - 274
Target Start/End: Complemental strand, 22709215 - 22709172
Alignment:
| Q |
231 |
tagttagtataattgaggtctataaataagaccatacatgtact |
274 |
Q |
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| T |
22709215 |
tagttagtgtaattgagatctataaataagaccatccatgtact |
22709172 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0286 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0286
Description:
Target: scaffold0286; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 221 - 408
Target Start/End: Original strand, 15128 - 15316
Alignment:
| Q |
221 |
ttaatcacactagttagtataattgaggtctataaataagaccatacatgtactcatttctcattcttttatt-agtttat--ccattcaactatgattt |
317 |
Q |
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|||| |||| |||||||||||| |||||| ||||||||||||| ||||| ||||||||||||| ||||||||| | | ||| ||||||| ||||| || |
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| T |
15128 |
ttaaccacattagttagtataactgaggtttataaataagaccctacatctactcatttctca-tcttttattcaatctatactcattcaa-tatgaatt |
15225 |
T |
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| Q |
318 |
tttatgagtattattatcataaatacacatatgttctttgtcttgcttagatttatcatttttctcccttcgattccatgattctcaacat |
408 |
Q |
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| T |
15226 |
tctacgagtattcttctcataaatacacatatgctctctatcttgcttacaactatgatcttcatccctatgattccatgattttcaacat |
15316 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 221 - 408
Target Start/End: Complemental strand, 2161978 - 2161790
Alignment:
| Q |
221 |
ttaatcacactagttagtataattgaggtctataaataagaccatacatgtactcatttctcattcttttatt-agtttat--ccattcaactatgattt |
317 |
Q |
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|||| |||| |||||||||||| |||||| ||||||||||||| ||||| ||||||||||||| ||||||||| | | ||| ||||||| ||||| || |
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| T |
2161978 |
ttaaccacattagttagtataactgaggtttataaataagaccctacatctactcatttctca-tcttttattcaatctatactcattcaa-tatgaatt |
2161881 |
T |
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| Q |
318 |
tttatgagtattattatcataaatacacatatgttctttgtcttgcttagatttatcatttttctcccttcgattccatgattctcaacat |
408 |
Q |
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| T |
2161880 |
tctacgagtattcttctcataaatacacatatgctctctatcttgcttacaactatgatcttcatccctatgattccatgattttcaacat |
2161790 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 358 - 402
Target Start/End: Complemental strand, 29154396 - 29154352
Alignment:
| Q |
358 |
tcttgcttagatttatcatttttctcccttcgattccatgattct |
402 |
Q |
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| T |
29154396 |
tcttgcttacatttataatctttcacccttcgattccatgattct |
29154352 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 231 - 284
Target Start/End: Original strand, 3458824 - 3458877
Alignment:
| Q |
231 |
tagttagtataattgaggtctataaataagaccatacatgtactcatttctcat |
284 |
Q |
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| T |
3458824 |
tagttagtgtgattgaggtctataaataagaccatacatgtactcattactcat |
3458877 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 310 - 407
Target Start/End: Original strand, 6324202 - 6324295
Alignment:
| Q |
310 |
tatgattttttatgagtattattatcataaatacacatatgttctttgtcttgcttagatttatcatttttctcccttcgattccatgattctcaaca |
407 |
Q |
| |
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||||| |||| ||||||||| || ||||||||||||||||| ||| | |||||| || ||| || |||||||||| || ||||| |||||||||| |
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| T |
6324202 |
tatgaattttaatgagtattcttctcataaatacacatatgctctctatcttgc----atatatgatctttctccctttgactccattattctcaaca |
6324295 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 261 - 407
Target Start/End: Complemental strand, 11812018 - 11811870
Alignment:
| Q |
261 |
accatacatgtactcatttctcattcttttattagtttatccattcaactatgattttttatgagtattattatcataaatacacatatgt--tctttgt |
358 |
Q |
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| T |
11812018 |
accatacatgtactcatttctcatgcttttatcaatctagtcattctactatgagtttctacgagtatttttcacatgaatacacatatatgctctctat |
11811919 |
T |
|
| Q |
359 |
cttgcttagatttatcatttttctcccttcgattccatgattctcaaca |
407 |
Q |
| |
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||| ||| || ||| || ||| ||||||||||||||||||||| |||| |
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| T |
11811918 |
cttatttacatctataatatttttcccttcgattccatgattcttaaca |
11811870 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 277
Target Start/End: Complemental strand, 10843236 - 10843199
Alignment:
| Q |
240 |
taattgaggtctataaataagaccatacatgtactcat |
277 |
Q |
| |
|
||||||||||||||||||||| |||| ||||||||||| |
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|
| T |
10843236 |
taattgaggtctataaataagtccattcatgtactcat |
10843199 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 241 - 278
Target Start/End: Complemental strand, 17309874 - 17309837
Alignment:
| Q |
241 |
aattgaggtctataaataagaccatacatgtactcatt |
278 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||| |
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| T |
17309874 |
aattgaggtctataaataagaccatccatgtactcatt |
17309837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 237 - 265
Target Start/End: Complemental strand, 52330767 - 52330739
Alignment:
| Q |
237 |
gtataattgaggtctataaataagaccat |
265 |
Q |
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||||||||||||||||||||||||||||| |
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|
| T |
52330767 |
gtataattgaggtctataaataagaccat |
52330739 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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