View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0734_low_10 (Length: 349)
Name: NF0734_low_10
Description: NF0734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0734_low_10 |
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| [»] scaffold0046 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 8 - 102
Target Start/End: Original strand, 50227152 - 50227246
Alignment:
| Q |
8 |
ccaacaatatccatggaaaatgaaggagagaaaattaaaggatagtgcacgaatacaacggaaatataaaagagacagaatactaagatttactc |
102 |
Q |
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| T |
50227152 |
ccaacaaagtccatggaaaatgaaggagagaaaattaaaagatagtgcaagaatacaactgaaatataaaagagacagaatactaagatttactc |
50227246 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 235 - 320
Target Start/End: Original strand, 50227296 - 50227375
Alignment:
| Q |
235 |
cttaaaaggcatgtctacaattatgcagtacaatcagcaaactcaagcttaatcgttgtatttgtataaatttctaacttcattga |
320 |
Q |
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| T |
50227296 |
cttaaaaggcatgtctacaattatgcagtacaatcagcaaactcaaggttaatcg------ttgtataaatttctaacttcattga |
50227375 |
T |
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Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 163 - 295
Target Start/End: Original strand, 29704139 - 29704267
Alignment:
| Q |
163 |
gcatcaaagaattacacagcaacagcagcagggtggaaatgacaaataaattcatatttcaagtaataagaacttaaaaggcatgtctacaattatgcag |
262 |
Q |
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| T |
29704139 |
gcatcaaagaatcacaca---acagcagcagggtgatgaagacgaataaattcagatttcaagtaataagaacttagaaggcatgtctacaattatctag |
29704235 |
T |
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| Q |
263 |
tacaatcagcaaactcaagcttaatcgttgtat |
295 |
Q |
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| T |
29704236 |
tacaatta-caaactcaagcttaatcgctgtat |
29704267 |
T |
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Target: scaffold0046 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: scaffold0046
Description:
Target: scaffold0046; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 101 - 142
Target Start/End: Original strand, 76957 - 76998
Alignment:
| Q |
101 |
tcaatgattttattcttttttccattcttctttttaaaatga |
142 |
Q |
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| T |
76957 |
tcaatgactttcttcttttttccattcttctttttaaaatga |
76998 |
T |
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Target: scaffold0046; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 68 - 102
Target Start/End: Original strand, 76903 - 76937
Alignment:
| Q |
68 |
gaaatataaaagagacagaatactaagatttactc |
102 |
Q |
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| T |
76903 |
gaaatataaaagagacagaacactaagatttactc |
76937 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 101 - 142
Target Start/End: Original strand, 34735651 - 34735692
Alignment:
| Q |
101 |
tcaatgattttattcttttttccattcttctttttaaaatga |
142 |
Q |
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| T |
34735651 |
tcaatgactttcttcttttttccattcttctttttaaaatga |
34735692 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 68 - 102
Target Start/End: Complemental strand, 28468136 - 28468102
Alignment:
| Q |
68 |
gaaatataaaagagacagaatactaagatttactc |
102 |
Q |
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| T |
28468136 |
gaaatataaaagagacagaacactaagatttactc |
28468102 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 68 - 102
Target Start/End: Original strand, 34735597 - 34735631
Alignment:
| Q |
68 |
gaaatataaaagagacagaatactaagatttactc |
102 |
Q |
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| T |
34735597 |
gaaatataaaagagacagaacactaagatttactc |
34735631 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 101 - 142
Target Start/End: Original strand, 24967636 - 24967677
Alignment:
| Q |
101 |
tcaatgattttattcttttttccattcttctttttaaaatga |
142 |
Q |
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| T |
24967636 |
tcaatgactttcttcttttttccattcttctttttaaaatga |
24967677 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 68 - 102
Target Start/End: Original strand, 24967582 - 24967616
Alignment:
| Q |
68 |
gaaatataaaagagacagaatactaagatttactc |
102 |
Q |
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| T |
24967582 |
gaaatataaaagagacagaacactaagatttactc |
24967616 |
T |
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