View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0734_low_11 (Length: 346)
Name: NF0734_low_11
Description: NF0734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0734_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 96 - 325
Target Start/End: Complemental strand, 20721341 - 20721112
Alignment:
| Q |
96 |
aattcacactccacaaatagatcatgacagtagtaatacactttctgctatggttctaggttctactatggtttttcctgcagttcttaatgctgcaatt |
195 |
Q |
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| T |
20721341 |
aattcacactccacaaatagatcatgacagtagtaatacacttcctgctatggttctaggttctactatggtttttcctgcaattcttaatgctgcaatt |
20721242 |
T |
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| Q |
196 |
gagctcaaattatttgatatcattgctagtaatagtggatttatgtcggcctacgaaattgctttaaagttaccaactcaacactccaatttaccaaata |
295 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
20721241 |
gagctcaaattatttgatatcattgctagtaatggtggatttatgtcggcctacgaaattgctttaaagttaccaactcaacactccgatttaccaaata |
20721142 |
T |
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| Q |
296 |
gactcgaccgtatgttgtgtattcttgcta |
325 |
Q |
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|||||||||||||||||||| ||||||||| |
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| T |
20721141 |
gactcgaccgtatgttgtgtgttcttgcta |
20721112 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 101; Significance: 5e-50; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 120 - 335
Target Start/End: Original strand, 23992864 - 23993082
Alignment:
| Q |
120 |
tgacagtagtaatacactttctgctatggttctaggttctactatggtttttcctgcagttcttaatgctgcaattgagctcaaattatttgatatcatt |
219 |
Q |
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| T |
23992864 |
tgacagtagtgatacactctctgctatggtgttaggttctgttatggttcttcctgcagttcttaatgctgcaattgaactcaaattatttgatatcatt |
23992963 |
T |
|
| Q |
220 |
gcta---gtaatagtggatttatgtcggcctacgaaattgctttaaagttaccaactcaacactccaatttaccaaatagactcgaccgtatgttgtgta |
316 |
Q |
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| T |
23992964 |
gctaccagcaatgatggatttatgtctgtctttgaaattgcttcaaacttaccaaatcaacactccgacttaccaaatagactcgatcgtgttttgtgcg |
23993063 |
T |
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| Q |
317 |
ttcttgctagctactctct |
335 |
Q |
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| T |
23993064 |
tgcttgctagctactctct |
23993082 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 9e-21; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 131 - 311
Target Start/End: Complemental strand, 3372770 - 3372584
Alignment:
| Q |
131 |
atacactttctgctatggttctaggttctactatggtttttcctgcagttcttaatgctgcaattgagctcaaattatttgatatcattgct------ag |
224 |
Q |
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| T |
3372770 |
atacactctctgctatggtacttggtgcaaatatggtgtttcctgcagttcttaacgctgcaattgaactcaatttatttgacatcatagctaatgaaag |
3372671 |
T |
|
| Q |
225 |
taatagtggatttatgtcggcctacgaaattgctttaaagttaccaactcaacactccaatttaccaaatagactcgaccgtatgtt |
311 |
Q |
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|||| ||||||| ||||| ||| |||||||||| |||| ||||||| ||||| || ||||||| ||||| ||||| || ||||| |
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| T |
3372670 |
taatggtggattcatgtcatcctttgaaattgcttcaaagctaccaacacaacattctgatttaccgaataggctcgatcgcatgtt |
3372584 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 145 - 335
Target Start/End: Complemental strand, 3299651 - 3299455
Alignment:
| Q |
145 |
atggttctaggttctactatggtttttcctgcagttcttaatgctgcaattgagctcaaattatttgatatcattgct------agtaatagtggattta |
238 |
Q |
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| T |
3299651 |
atggtgctaggtgccaatatggtgtttcctgcagttcttaacgccgcaattgaactcaacttgtttgaaatcattgctaaggaaagtaatggtgatttca |
3299552 |
T |
|
| Q |
239 |
tgtcggcctacgaaattgctttaaagttaccaactcaacactccaatttaccaaatagactcgaccgtatgttgtgtattcttgctagctactctct |
335 |
Q |
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|||| |||| |||||||||| ||||||||||||||||||||| | || |||||||| | || ||||||||| | || || |||||||||||||| |
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| T |
3299551 |
tgtcagcctttgaaattgcttcaaagttaccaactcaacactctgacttgccaaataggttagatcgtatgttgcgcatgctagctagctactctct |
3299455 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 131 - 223
Target Start/End: Complemental strand, 3362019 - 3361927
Alignment:
| Q |
131 |
atacactttctgctatggttctaggttctactatggtttttcctgcagttcttaatgctgcaattgagctcaaattatttgatatcattgcta |
223 |
Q |
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||||||| ||||||||||| || ||| | | |||||| ||||||||||||||||| ||||||||||| ||| | ||||||||||||||||||| |
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| T |
3362019 |
atacactctctgctatggtacttggtgcaaatatggtgtttcctgcagttcttaacgctgcaattgaactccatttatttgatatcattgcta |
3361927 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 152 - 223
Target Start/End: Complemental strand, 3390907 - 3390836
Alignment:
| Q |
152 |
taggttctactatggtttttcctgcagttcttaatgctgcaattgagctcaaattatttgatatcattgcta |
223 |
Q |
| |
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||||||| | |||||| |||||||||||| |||| ||||||||||| ||||| || |||||||||||||||| |
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| T |
3390907 |
taggttccaatatggtgtttcctgcagtttttaaagctgcaattgaactcaacttgtttgatatcattgcta |
3390836 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 149 - 220
Target Start/End: Complemental strand, 3405256 - 3405185
Alignment:
| Q |
149 |
ttctaggttctactatggtttttcctgcagttcttaatgctgcaattgagctcaaattatttgatatcattg |
220 |
Q |
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|||||||| | | |||||| |||||||||||| |||| ||||||||||| ||||| || ||||||||||||| |
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| T |
3405256 |
ttctaggtgccaatatggtgtttcctgcagtttttaaagctgcaattgaactcaacttgtttgatatcattg |
3405185 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 145 - 311
Target Start/End: Complemental strand, 3350619 - 3350459
Alignment:
| Q |
145 |
atggttctaggttctactatggtttttcctgcagttcttaatgctgcaattgagctcaaattatttgatatcattgctagtaatagtggatttatgtcgg |
244 |
Q |
| |
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||||| |||||||| | | |||| ||||| ||||||||||||||||||||| | ||||| || ||||| ||||||| | | |||||| | ||| | |
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| T |
3350619 |
atggtactaggttccaatttggtgtttccagcagttcttaatgctgcaattcaactcaacttgtttgaaatcattgg--gga----tggattcaagtcag |
3350526 |
T |
|
| Q |
245 |
cctacgaaattgctttaaagttaccaactcaacactccaatttaccaaatagactcgaccgtatgtt |
311 |
Q |
| |
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|| |||||||||| ||| ||||||||||||||||| |||| |||||| | |||||||||||||| |
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| T |
3350525 |
ccattgaaattgcttcaaacttaccaactcaacactctgatttgccaaatcggctcgaccgtatgtt |
3350459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 167 - 223
Target Start/End: Complemental strand, 13407699 - 13407643
Alignment:
| Q |
167 |
tttttcctgcagttcttaatgctgcaattgagctcaaattatttgatatcattgcta |
223 |
Q |
| |
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||||||||||| | || |||||||| ||||| ||||| |||||||||||||| |||| |
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| T |
13407699 |
tttttcctgcaatactaaatgctgctattgatctcaatttatttgatatcatagcta |
13407643 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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