View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0734_low_15 (Length: 315)

Name: NF0734_low_15
Description: NF0734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0734_low_15
NF0734_low_15
[»] chr6 (4 HSPs)
chr6 (88-315)||(10501883-10502110)
chr6 (149-227)||(31934715-31934793)
chr6 (163-215)||(6982840-6982892)
chr6 (160-209)||(28867799-28867848)
[»] chr4 (6 HSPs)
chr4 (107-291)||(16595030-16595214)
chr4 (164-261)||(49212140-49212239)
chr4 (123-214)||(24977835-24977922)
chr4 (160-223)||(2048987-2049050)
chr4 (160-223)||(39735816-39735879)
chr4 (160-223)||(3958949-3959012)
[»] chr2 (9 HSPs)
chr2 (96-287)||(30426062-30426260)
chr2 (96-257)||(32229950-32230111)
chr2 (164-223)||(21949901-21949960)
chr2 (178-223)||(41411526-41411571)
chr2 (164-223)||(9446973-9447032)
chr2 (160-223)||(14555889-14555952)
chr2 (164-223)||(31320254-31320313)
chr2 (160-223)||(13698134-13698197)
chr2 (166-223)||(40275144-40275201)
[»] chr1 (6 HSPs)
chr1 (96-227)||(9057862-9057993)
chr1 (98-227)||(16140376-16140505)
chr1 (150-227)||(42080691-42080768)
chr1 (154-227)||(18187915-18187988)
chr1 (140-227)||(40632829-40632916)
chr1 (166-223)||(43403898-43403955)
[»] chr8 (4 HSPs)
chr8 (96-227)||(4922712-4922843)
chr8 (163-223)||(6596522-6596582)
chr8 (160-223)||(40715949-40716012)
chr8 (160-220)||(19168180-19168240)
[»] chr5 (4 HSPs)
chr5 (110-256)||(27584649-27584795)
chr5 (164-223)||(31610042-31610101)
chr5 (160-223)||(33417434-33417497)
chr5 (167-223)||(18979870-18979926)
[»] chr7 (9 HSPs)
chr7 (96-256)||(32033732-32033892)
chr7 (96-256)||(32025213-32025372)
chr7 (154-227)||(25862609-25862682)
chr7 (154-227)||(4277317-4277390)
chr7 (160-223)||(38836142-38836205)
chr7 (160-223)||(49094549-49094612)
chr7 (161-223)||(8308214-8308276)
chr7 (167-223)||(8425057-8425113)
chr7 (160-220)||(30559369-30559429)
[»] chr3 (3 HSPs)
chr3 (160-223)||(11536254-11536317)
chr3 (160-223)||(3830683-3830746)
chr3 (163-223)||(3792503-3792563)
[»] scaffold0060 (1 HSPs)
scaffold0060 (160-223)||(18925-18987)
[»] scaffold0141 (1 HSPs)
scaffold0141 (161-223)||(16537-16599)


Alignment Details
Target: chr6 (Bit Score: 192; Significance: 1e-104; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 88 - 315
Target Start/End: Complemental strand, 10502110 - 10501883
Alignment:
Q  88 tcatctaactaagtccaacaggaagtcaagaaagagtagcagctctgcaagaggcaaagactctgatggcatcacaagtagtgagcacatccaaactcgt 187  Q
    ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  10502110 tcatcaaactaagtccagcaggaagtcaagaaagagtagcagctctgcaagaggcaaagactctgatggcatcacaagtagtaagcacatccaaactcgt 10502011  T
Q  188 ttcaaaaagggtgtaataaaaagcaatcccaaatatgtttcttaataggtgctagtagcttgttgtttggcagcttattctagctagttgatttgcttct 287  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||    
T  10502010 tccaaaaagggtgtaataaaaagcaatcccaaatatgtttcttaataggtgctagtagctagttttttggcagcttattctagctagttgatttgcttct 10501911  T
Q  288 ttgcgtatattttatttgagttaggttt 315  Q
    |||||||||| || ||||||| ||||||    
T  10501910 ttgcgtatatgttgtttgagtcaggttt 10501883  T

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Target: chr6; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 149 - 227
Target Start/End: Original strand, 31934715 - 31934793
Alignment:
Q  149 tctgatggcatcacaagtagtgagcacatccaaactcgtttcaaaaagggtgtaataaaaagcaatcccaaatatgttt 227  Q
    |||| ||||||||||||||||||| ||||||||||||| |  |||||||||||||| |||||||||| |||||||||||    
T  31934715 tctggtggcatcacaagtagtgagaacatccaaactcgatctaaaaagggtgtaattaaaagcaatctcaaatatgttt 31934793  T

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Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 163 - 215
Target Start/End: Original strand, 6982840 - 6982892
Alignment:
Q  163 aagtagtgagcacatccaaactcgtttcaaaaagggtgtaataaaaagcaatc 215  Q
    ||||||||||||||| ||||||||||  |||||||||||||| ||||||||||    
T  6982840 aagtagtgagcacatacaaactcgttcaaaaaagggtgtaatcaaaagcaatc 6982892  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 209
Target Start/End: Complemental strand, 28867848 - 28867799
Alignment:
Q  160 cacaagtagtgagcacatccaaactcgtttcaaaaagggtgtaataaaaa 209  Q
    ||||||||||||| |||| ||||||||||| ||||||| |||||| ||||    
T  28867848 cacaagtagtgagtacatacaaactcgtttaaaaaaggttgtaatcaaaa 28867799  T

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Target: chr4 (Bit Score: 133; Significance: 4e-69; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 107 - 291
Target Start/End: Complemental strand, 16595214 - 16595030
Alignment:
Q  107 aggaagtcaagaaagagtagcagctctgcaagaggcaaagactctgatggcatcacaagtagtgagcacatccaaactcgtttcaaaaagggtgtaataa 206  Q
    ||||||||||||||||||||||||||||||||| |||||  ||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||    
T  16595214 aggaagtcaagaaagagtagcagctctgcaagaagcaaatgctctgatggcatcacaagtagtgagtacatccaaactcgtttcaaaaagggtgttataa 16595115  T
Q  207 aaagcaatcccaaatatgtttcttaataggtgctagtagcttgttgtttggcagcttattctagctagttgatttgcttctttgc 291  Q
    |||||||||||||||||||||||||| | ||||| |||||| ||||||||||||| || |||||| ||||| |||||||||||||    
T  16595114 aaagcaatcccaaatatgtttcttaagatgtgcttgtagctagttgtttggcagcctagtctagccagttgttttgcttctttgc 16595030  T

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Target: chr4; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 164 - 261
Target Start/End: Original strand, 49212140 - 49212239
Alignment:
Q  164 agtagtgagcacatccaaactcgtttcaaaaagggtgtaataaaaagcaatcccaa--atatgtttcttaataggtgctagtagcttgttgtttggcagc 261  Q
    ||||||||| | |||||||||||||||||||||||||| |||||||||||||||||  ||||||||||||| | ||||| |||||| |||||||||||||    
T  49212140 agtagtgagtatatccaaactcgtttcaaaaagggtgttataaaaagcaatcccaactatatgtttcttaagatgtgcttgtagctagttgtttggcagc 49212239  T

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Target: chr4; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 123 - 214
Target Start/End: Complemental strand, 24977922 - 24977835
Alignment:
Q  123 gtagcagctctgcaagaggcaaagactctgatggcatcacaagtagtgagcacatccaaactcgtttcaaaaagggtgtaataaaaagcaat 214  Q
    |||||||||||||||||||||||| |||||||||||||||||||    |||||||||||||||||| ||||||| ||||||| |||||||||    
T  24977922 gtagcagctctgcaagaggcaaaggctctgatggcatcacaagt----agcacatccaaactcgttccaaaaagagtgtaatcaaaagcaat 24977835  T

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Target: chr4; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 160 - 223
Target Start/End: Original strand, 2048987 - 2049050
Alignment:
Q  160 cacaagtagtgagcacatccaaactcgtttcaaaaagggtgtaataaaaagcaatcccaaatat 223  Q
    ||||||||||||||| || |||||||||| |||||||||||| || ||||||||||||||||||    
T  2048987 cacaagtagtgagcatatacaaactcgttccaaaaagggtgttatcaaaagcaatcccaaatat 2049050  T

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Target: chr4; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 160 - 223
Target Start/End: Original strand, 39735816 - 39735879
Alignment:
Q  160 cacaagtagtgagcacatccaaactcgtttcaaaaagggtgtaataaaaagcaatcccaaatat 223  Q
    |||||||||||||||||| |||||||||| ||| ||||||||||| ||||||||||| ||||||    
T  39735816 cacaagtagtgagcacatacaaactcgttccaagaagggtgtaatcaaaagcaatccaaaatat 39735879  T

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Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 160 - 223
Target Start/End: Complemental strand, 3959012 - 3958949
Alignment:
Q  160 cacaagtagtgagcacatccaaactcgtttcaaaaagggtgtaataaaaagcaatcccaaatat 223  Q
    ||||| |||||||||||| ||||||||||  ||||||||||| || ||||||||||||||||||    
T  3959012 cacaaatagtgagcacatacaaactcgttctaaaaagggtgtcatcaaaagcaatcccaaatat 3958949  T

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Target: chr2 (Bit Score: 117; Significance: 1e-59; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 96 - 287
Target Start/End: Complemental strand, 30426260 - 30426062
Alignment:
Q  96 ctaagtccaacaggaagtcaagaaagagtagcagctctgcaagaggcaaagactctgatggcatcacaagtagtgagcacatccaaactcgtttcaaaaa 195  Q
    ||||||||| |||||  |||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| ||||||    
T  30426260 ctaagtccagcaggatatcaagaaagagtagcagctctgcaagaggcaaaggctcggatggcatcacaagtagtgagcacatccaaactcgttccaaaaa 30426161  T
Q  196 gggtgtaataaaaagcaatcccaaatatgtttcttaataggtgctagtagcttgttg-------tttggcagcttattctagctagttgatttgcttct 287  Q
    |||||||||||||| |||||| ||||||| ||||||||| |||| ||||||| ||||       |||||||||||| |||||| |||||||||||||||    
T  30426160 gggtgtaataaaaaacaatccaaaatatgcttcttaatatgtgcaagtagctagttgtttggactttggcagcttagtctagccagttgatttgcttct 30426062  T

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Target: chr2; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 96 - 257
Target Start/End: Complemental strand, 32230111 - 32229950
Alignment:
Q  96 ctaagtccaacaggaagtcaagaaagagtagcagctctgcaagaggcaaagactctgatggcatcacaagtagtgagcacatccaaactcgtttcaaaaa 195  Q
    ||||||||| |||||  ||||||||||||||||||| |||||||||||||| ||| |||| |||||||||||||||||||||||||||||||| ||||||    
T  32230111 ctaagtccagcaggatatcaagaaagagtagcagctttgcaagaggcaaaggctcggatgacatcacaagtagtgagcacatccaaactcgttccaaaaa 32230012  T
Q  196 gggtgtaataaaaagcaatcccaaatatgtttcttaataggtgctagtagcttgttgtttgg 257  Q
    |||||||||||||| |||||| ||||||| ||||||||| |||||||||||| |||||||||    
T  32230011 gggtgtaataaaaaacaatccaaaatatgcttcttaatatgtgctagtagctagttgtttgg 32229950  T

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Target: chr2; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 164 - 223
Target Start/End: Complemental strand, 21949960 - 21949901
Alignment:
Q  164 agtagtgagcacatccaaactcgtttcaaaaagggtgtaataaaaagcaatcccaaatat 223  Q
    |||||||||||||| ||||||||||  |||||||||||||| ||||||||||||||||||    
T  21949960 agtagtgagcacatacaaactcgttctaaaaagggtgtaatcaaaagcaatcccaaatat 21949901  T

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Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 178 - 223
Target Start/End: Complemental strand, 41411571 - 41411526
Alignment:
Q  178 ccaaactcgtttcaaaaagggtgtaataaaaagcaatcccaaatat 223  Q
    ||||||||||| ||||||||||||||| ||||||||||||||||||    
T  41411571 ccaaactcgttccaaaaagggtgtaatcaaaagcaatcccaaatat 41411526  T

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Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 164 - 223
Target Start/End: Original strand, 9446973 - 9447032
Alignment:
Q  164 agtagtgagcacatccaaactcgtttcaaaaagggtgtaataaaaagcaatcccaaatat 223  Q
    |||||||||||||  ||||| |||| |||||||||||| || ||||||||||||||||||    
T  9446973 agtagtgagcacacacaaacgcgttccaaaaagggtgtgatcaaaagcaatcccaaatat 9447032  T

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Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 160 - 223
Target Start/End: Original strand, 14555889 - 14555952
Alignment:
Q  160 cacaagtagtgagcacatccaaactcgtttcaaaaagggtgtaataaaaagcaatcccaaatat 223  Q
    |||||| ||||| || || |||||||||| |||||||||||| || ||||||||||||||||||    
T  14555889 cacaagcagtgatcatatacaaactcgttccaaaaagggtgtgatcaaaagcaatcccaaatat 14555952  T

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Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 164 - 223
Target Start/End: Original strand, 31320254 - 31320313
Alignment:
Q  164 agtagtgagcacatccaaactcgtttcaaaaagggtgtaataaaaagcaatcccaaatat 223  Q
    |||||||||| ||| ||||| |||| |||||||||||| || ||||||||||||||||||    
T  31320254 agtagtgagctcatacaaacgcgttccaaaaagggtgtgatcaaaagcaatcccaaatat 31320313  T

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Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 160 - 223
Target Start/End: Original strand, 13698134 - 13698197
Alignment:
Q  160 cacaagtagtgagcacatccaaactcgtttcaaaaagggtgtaataaaaagcaatcccaaatat 223  Q
    |||||||||||||||||| |||||| ||| ||  |||||||| || ||||||||||| ||||||    
T  13698134 cacaagtagtgagcacattcaaactggttccatgaagggtgtgatcaaaagcaatccaaaatat 13698197  T

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Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 223
Target Start/End: Original strand, 40275144 - 40275201
Alignment:
Q  166 tagtgagcacatccaaactcgtttcaaaaagggtgtaataaaaagcaatcccaaatat 223  Q
    |||||| || || ||||||||||  ||||||||||| || ||||||||||||||||||    
T  40275144 tagtgaacaaatacaaactcgttctaaaaagggtgtcatcaaaagcaatcccaaatat 40275201  T

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Target: chr1 (Bit Score: 100; Significance: 2e-49; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 96 - 227
Target Start/End: Original strand, 9057862 - 9057993
Alignment:
Q  96 ctaagtccaacaggaagtcaagaaagagtagcagctctgcaagaggcaaagactctgatggcatcacaagtagtgagcacatccaaactcgtttcaaaaa 195  Q
    |||||||||||||||||||| |||||||||||||||| ||||||||||||| |||||||||||| |||||||||||||||||||||||| || |||||||    
T  9057862 ctaagtccaacaggaagtcaggaaagagtagcagctccgcaagaggcaaaggctctgatggcattacaagtagtgagcacatccaaacttgtctcaaaaa 9057961  T
Q  196 gggtgtaataaaaagcaatcccaaatatgttt 227  Q
    ||||||||| |||||||||| |||||||||||    
T  9057962 gggtgtaatcaaaagcaatctcaaatatgttt 9057993  T

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Target: chr1; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 98 - 227
Target Start/End: Complemental strand, 16140505 - 16140376
Alignment:
Q  98 aagtccaacaggaagtcaagaaagagtagcagctctgcaagaggcaaagactctgatggcatcacaagtagtgagcacatccaaactcgtttcaaaaagg 197  Q
    ||||||| || |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| | |||||||    
T  16140505 aagtccagcaagaagtcaagaaagagtagcagctctgcaagaggcaaaggctctgatggcatcacaagtagtgagcaaatccaaactcgtcttaaaaagg 16140406  T
Q  198 gtgtaataaaaagcaatcccaaatatgttt 227  Q
     |||||| |||||||| || ||||||||||    
T  16140405 atgtaatcaaaagcaaccctaaatatgttt 16140376  T

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Target: chr1; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 150 - 227
Target Start/End: Complemental strand, 42080768 - 42080691
Alignment:
Q  150 ctgatggcatcacaagtagtgagcacatccaaactcgtttcaaaaagggtgtaataaaaagcaatcccaaatatgttt 227  Q
    |||||||| |||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||    
T  42080768 ctgatggcgtcacaagtagtgagcacatccaaactcgttccaaaaagggtgtaatcaaaagcaatcccaaatatgttt 42080691  T

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Target: chr1; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 154 - 227
Target Start/End: Original strand, 18187915 - 18187988
Alignment:
Q  154 tggcatcacaagtagtgagcacatccaaactcgtttcaaaaagggtgtaataaaaagcaatcccaaatatgttt 227  Q
    ||||||||||||||||||||||||||||||||| |||||| ||||||||||  |||||||||||||||||||||    
T  18187915 tggcatcacaagtagtgagcacatccaaactcgattcaaagagggtgtaatttaaagcaatcccaaatatgttt 18187988  T

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Target: chr1; HSP #5
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 140 - 227
Target Start/End: Original strand, 40632829 - 40632916
Alignment:
Q  140 ggcaaagactctgatggcatcacaagtagtgagcacatccaaactcgtttcaaaaagggtgtaataaaaagcaatcccaaatatgttt 227  Q
    |||||||  ||||||||||||||| |||||||||| |||||||||| ||  |||||||| ||||| ||||||||||||||||||||||    
T  40632829 ggcaaaggttctgatggcatcacaggtagtgagcatatccaaactcattctaaaaagggcgtaatcaaaagcaatcccaaatatgttt 40632916  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 223
Target Start/End: Complemental strand, 43403955 - 43403898
Alignment:
Q  166 tagtgagcacatccaaactcgtttcaaaaagggtgtaataaaaagcaatcccaaatat 223  Q
    |||||| || || ||||||||||  ||||||||||| || ||||||||||||||||||    
T  43403955 tagtgaacaaatacaaactcgttctaaaaagggtgtcatcaaaagcaatcccaaatat 43403898  T

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Target: chr8 (Bit Score: 96; Significance: 4e-47; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 96 - 227
Target Start/End: Original strand, 4922712 - 4922843
Alignment:
Q  96 ctaagtccaacaggaagtcaagaaagagtagcagctctgcaagaggcaaagactctgatggcatcacaagtagtgagcacatccaaactcgtttcaaaaa 195  Q
    ||||||||| |||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||| |||||||||| ||||||    
T  4922712 ctaagtccagcaggaagtcaagaaagagtagcagctctgcaataggcaaaggctctgatggcatcataagtagtgagcacattcaaactcgttccaaaaa 4922811  T
Q  196 gggtgtaataaaaagcaatcccaaatatgttt 227  Q
    |||| | |||||||||| ||||||||||||||    
T  4922812 gggtctcataaaaagcattcccaaatatgttt 4922843  T

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Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 163 - 223
Target Start/End: Original strand, 6596522 - 6596582
Alignment:
Q  163 aagtagtgagcacatccaaactcgtttcaaaaagggtgtaataaaaagcaatcccaaatat 223  Q
    ||||||||||||||||||||||| ||  |||||||||||||| ||||||||||| ||||||    
T  6596522 aagtagtgagcacatccaaactcattctaaaaagggtgtaatcaaaagcaatcctaaatat 6596582  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 160 - 223
Target Start/End: Original strand, 40715949 - 40716012
Alignment:
Q  160 cacaagtagtgagcacatccaaactcgtttcaaaaagggtgtaataaaaagcaatcccaaatat 223  Q
    |||||||||||||||||| ||||||||||||||||| | ||  || ||||||||||| ||||||    
T  40715949 cacaagtagtgagcacatacaaactcgtttcaaaaaagatgctatcaaaagcaatcctaaatat 40716012  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 160 - 220
Target Start/End: Original strand, 19168180 - 19168240
Alignment:
Q  160 cacaagtagtgagcacatccaaactcgtttcaaaaagggtgtaataaaaagcaatcccaaa 220  Q
    ||||| || ||||||||| ||||||||||  ||||||||||| || ||||||||| |||||    
T  19168180 cacaattattgagcacatacaaactcgttctaaaaagggtgtcatcaaaagcaattccaaa 19168240  T

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Target: chr5 (Bit Score: 91; Significance: 4e-44; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 110 - 256
Target Start/End: Original strand, 27584649 - 27584795
Alignment:
Q  110 aagtcaagaaagagtagcagctctgcaagaggcaaagactctgatggcatcacaagtagtgagcacatccaaactcgtttcaaaaagggtgtaataaaaa 209  Q
    |||||| ||||||||||||||||| |||||||||||  ||| ||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||     
T  27584649 aagtcaggaaagagtagcagctctacaagaggcaaatgctcggatggcatcacaagtagtgagcacatccaaactcgttccaaaaagggtgttataaaac 27584748  T
Q  210 gcaatcccaaatatgtttcttaataggtgctagtagcttgttgtttg 256  Q
     |||||| ||||||| ||||||||| ||| |||||||| ||||||||    
T  27584749 acaatcctaaatatgcttcttaatatgtgttagtagctagttgtttg 27584795  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 164 - 223
Target Start/End: Original strand, 31610042 - 31610101
Alignment:
Q  164 agtagtgagcacatccaaactcgtttcaaaaagggtgtaataaaaagcaatcccaaatat 223  Q
    |||||||||||||| ||||| ||||  ||||||||||| || ||||||||||||||||||    
T  31610042 agtagtgagcacatacaaacgcgttctaaaaagggtgtgatcaaaagcaatcccaaatat 31610101  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 160 - 223
Target Start/End: Original strand, 33417434 - 33417497
Alignment:
Q  160 cacaagtagtgagcacatccaaactcgtttcaaaaagggtgtaataaaaagcaatcccaaatat 223  Q
    |||||||||||||||||| |||| |||||  |||||||||||||| ||||| ||||| ||||||    
T  33417434 cacaagtagtgagcacatacaaattcgttctaaaaagggtgtaatcaaaagtaatcctaaatat 33417497  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 223
Target Start/End: Original strand, 18979870 - 18979926
Alignment:
Q  167 agtgagcacatccaaactcgtttcaaaaagggtgtaataaaaagcaatcccaaatat 223  Q
    ||||| ||||| ||||||||||  ||||||||||| || |||| |||||||||||||    
T  18979870 agtgatcacatacaaactcgttctaaaaagggtgtcatcaaaaccaatcccaaatat 18979926  T

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Target: chr7 (Bit Score: 89; Significance: 7e-43; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 96 - 256
Target Start/End: Original strand, 32033732 - 32033892
Alignment:
Q  96 ctaagtccaacaggaagtcaagaaagagtagcagctctgcaagaggcaaagactctgatggcatcacaagtagtgagcacatccaaactcgtttcaaaaa 195  Q
    |||||| || ||| |||||| ||||||||||||||||| |||||||||||| ||| ||||||||||||||||||||||| ||||||||||||| ||||||    
T  32033732 ctaagttcagcagaaagtcaggaaagagtagcagctctacaagaggcaaaggctcggatggcatcacaagtagtgagcatatccaaactcgttccaaaaa 32033831  T
Q  196 gggtgtaataaaaagcaatcccaaatatgtttcttaataggtgctagtagcttgttgtttg 256  Q
    |||||| ||||||  |||||| ||||||| |||||||||  || |||||||| ||||||||    
T  32033832 gggtgttataaaacacaatcctaaatatgcttcttaatatttgttagtagctagttgtttg 32033892  T

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Target: chr7; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 96 - 256
Target Start/End: Original strand, 32025213 - 32025372
Alignment:
Q  96 ctaagtccaacaggaagtcaagaaagagtagcagctctgcaagaggcaaagactctgatggcatcacaagtagtgagcacatccaaactcgtttcaaaaa 195  Q
    |||||| || ||| |||||| ||||||||||||||||| |||||||||||| ||| ||||||||||||||||||||||||||||||||||||| ||||||    
T  32025213 ctaagttcagcagaaagtcaggaaagagtagcagctctacaagaggcaaaggctcggatggcatcacaagtagtgagcacatccaaactcgttccaaaaa 32025312  T
Q  196 gggtgtaataaaaagcaatcccaaatatgtttcttaataggtgctagtagcttgttgtttg 256  Q
     ||||| ||||||  |||||| ||||||| |||||||||  || |||||||| ||||||||    
T  32025313 -ggtgttataaaacacaatcctaaatatgcttcttaatatttgttagtagctggttgtttg 32025372  T

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Target: chr7; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 154 - 227
Target Start/End: Complemental strand, 25862682 - 25862609
Alignment:
Q  154 tggcatcacaagtagtgagcacatccaaactcgtttcaaaaagggtgtaataaaaagcaatcccaaatatgttt 227  Q
    ||||||||||||||||||||||||||||||||| | ||||||||||||||| ||||||||||| ||||||||||    
T  25862682 tggcatcacaagtagtgagcacatccaaactcgatccaaaaagggtgtaattaaaagcaatcctaaatatgttt 25862609  T

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Target: chr7; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 154 - 227
Target Start/End: Original strand, 4277317 - 4277390
Alignment:
Q  154 tggcatcacaagtagtgagcacatccaaactcgtttcaaaaagggtgtaataaaaagcaatcccaaatatgttt 227  Q
    ||||||||||||||||||||||||||||| ||  | |||||||||||| || ||||||||||||||||||||||    
T  4277317 tggcatcacaagtagtgagcacatccaaaatcaatccaaaaagggtgtcattaaaagcaatcccaaatatgttt 4277390  T

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Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 160 - 223
Target Start/End: Original strand, 38836142 - 38836205
Alignment:
Q  160 cacaagtagtgagcacatccaaactcgtttcaaaaagggtgtaataaaaagcaatcccaaatat 223  Q
    ||||||||||||||| || |||||||||| |||||| ||||| || ||||||||||||||||||    
T  38836142 cacaagtagtgagcatatacaaactcgttccaaaaatggtgttatcaaaagcaatcccaaatat 38836205  T

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Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 160 - 223
Target Start/End: Complemental strand, 49094612 - 49094549
Alignment:
Q  160 cacaagtagtgagcacatccaaactcgtttcaaaaagggtgtaataaaaagcaatcccaaatat 223  Q
    |||||||||||||||||| ||||| |||| |||||| ||||| || ||||||||||||||||||    
T  49094612 cacaagtagtgagcacatacaaacacgttccaaaaaaggtgttatcaaaagcaatcccaaatat 49094549  T

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Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 161 - 223
Target Start/End: Complemental strand, 8308276 - 8308214
Alignment:
Q  161 acaagtagtgagcacatccaaactcgtttcaaaaagggtgtaataaaaagcaatcccaaatat 223  Q
    ||||||||||||||||| ||||||||||  ||||||  |||||| ||||| ||||||||||||    
T  8308276 acaagtagtgagcacatacaaactcgttctaaaaagaatgtaatcaaaagtaatcccaaatat 8308214  T

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Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 167 - 223
Target Start/End: Original strand, 8425057 - 8425113
Alignment:
Q  167 agtgagcacatccaaactcgtttcaaaaagggtgtaataaaaagcaatcccaaatat 223  Q
    ||||||||||| |||||||||| ||| |||||||| || ||||||||||| ||||||    
T  8425057 agtgagcacatacaaactcgttccaagaagggtgtgatcaaaagcaatccaaaatat 8425113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 160 - 220
Target Start/End: Complemental strand, 30559429 - 30559369
Alignment:
Q  160 cacaagtagtgagcacatccaaactcgtttcaaaaagggtgtaataaaaagcaatcccaaa 220  Q
    ||||||| ||||||||||  ||||| ||| |||||||||||| || |||||||||||||||    
T  30559429 cacaagtcgtgagcacatagaaacttgttccaaaaagggtgttatcaaaagcaatcccaaa 30559369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 160 - 223
Target Start/End: Original strand, 11536254 - 11536317
Alignment:
Q  160 cacaagtagtgagcacatccaaactcgtttcaaaaagggtgtaataaaaagcaatcccaaatat 223  Q
    |||||||||||||||||| ||||||||||| ||||||||||||||||||| ||||| |||||||    
T  11536254 cacaagtagtgagcacatacaaactcgtttaaaaaagggtgtaataaaaaacaatcacaaatat 11536317  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 160 - 223
Target Start/End: Complemental strand, 3830746 - 3830683
Alignment:
Q  160 cacaagtagtgagcacatccaaactcgtttcaaaaagggtgtaataaaaagcaatcccaaatat 223  Q
    |||||||||||||||||| |||||||||| ||  ||| |||| || ||||||||||| ||||||    
T  3830746 cacaagtagtgagcacattcaaactcgttccatgaagagtgtgatcaaaagcaatccaaaatat 3830683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 223
Target Start/End: Complemental strand, 3792563 - 3792503
Alignment:
Q  163 aagtagtgagcacatccaaactcgtttcaaaaagggtgtaataaaaagcaatcccaaatat 223  Q
    ||||||||||||||| |||||||||| ||  || ||||| || ||||||||||| ||||||    
T  3792563 aagtagtgagcacattcaaactcgttccatgaaaggtgtgatcaaaagcaatccaaaatat 3792503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 160 - 223
Target Start/End: Original strand, 18925 - 18987
Alignment:
Q  160 cacaagtagtgagcacatccaaactcgtttcaaaaagggtgtaataaaaagcaatcccaaatat 223  Q
    ||||| || ||||||||| |||||||||| | |||||||||| || ||||||||||||||||||    
T  18925 cacaattattgagcacatacaaactcgtt-ctaaaagggtgtcatcaaaagcaatcccaaatat 18987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0141 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0141
Description:

Target: scaffold0141; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 223
Target Start/End: Complemental strand, 16599 - 16537
Alignment:
Q  161 acaagtagtgagcacatccaaactcgtttcaaaaagggtgtaataaaaagcaatcccaaatat 223  Q
    ||||| |||||||||||  ||||||||| ||| |||||||| || ||||||||||| ||||||    
T  16599 acaaggagtgagcacatataaactcgttccaagaagggtgtgatcaaaagcaatccaaaatat 16537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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