View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0734_low_19 (Length: 287)
Name: NF0734_low_19
Description: NF0734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0734_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 169; Significance: 1e-90; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 47 - 236
Target Start/End: Complemental strand, 24438576 - 24438385
Alignment:
| Q |
47 |
agctgttgcagaattccggcggacccatgctgacacatggaatgttcagaaagagttattcactaaagagcaacttgaggtagctttctatgtagacgaa |
146 |
Q |
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| T |
24438576 |
agctgttgcagaattccggcggacccatgctgacacatggaatgttcagaaagagttattcactaaagagcaacttgaggtagctttctatgtagacgaa |
24438477 |
T |
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| Q |
147 |
acgtattgtgctatgatttggaaaacgtaattattacttgtgttttttattt--tatgtgtcctaatgtttatttctcccccatattgacag |
236 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |||| |
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| T |
24438476 |
acgtattgtgctatgatttggaaaacctaattattacttgtgttttttattttatatgtgtcctaatgtttatttttcccccatattcacag |
24438385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 47 - 236
Target Start/End: Complemental strand, 24463805 - 24463615
Alignment:
| Q |
47 |
agctgttgcagaattccggcggacccatgctgacacatggaatgttcagaaagagttattcactaaagagcaacttgaggtagctttctatgtagacgaa |
146 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |||||||||||| |
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| T |
24463805 |
agctgttgcagaattccggcggacccatgctgacacatggaatgttcagaaagagttattcactgaagagcagcttgaggtagcttt-tatgtagacgaa |
24463707 |
T |
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| Q |
147 |
acgtattgtgctatgatttggaaaacgtaattattacttgtgttttttattt--tatgtgtcctaatgtttatttctcccccatattgacag |
236 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| |
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| T |
24463706 |
acatattgtgctatgatttggaaaacgtaattattacttgtgttttttattttatatgtgtcctaatgtttatttctcccccatattcacag |
24463615 |
T |
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