View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0734_low_2 (Length: 582)

Name: NF0734_low_2
Description: NF0734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0734_low_2
NF0734_low_2
[»] chr6 (8 HSPs)
chr6 (1-504)||(33186702-33187206)
chr6 (61-132)||(25085068-25085139)
chr6 (39-116)||(27100587-27100664)
chr6 (61-132)||(10219589-10219660)
chr6 (59-89)||(6699635-6699665)
chr6 (39-89)||(31951653-31951703)
chr6 (52-97)||(11589969-11590014)
chr6 (44-132)||(17848794-17848882)
[»] scaffold0003 (2 HSPs)
scaffold0003 (39-131)||(109233-109324)
scaffold0003 (40-131)||(89236-89326)
[»] chr4 (13 HSPs)
chr4 (39-132)||(51226068-51226161)
chr4 (77-132)||(32934139-32934194)
chr4 (61-132)||(36218544-36218615)
chr4 (59-132)||(42375214-42375287)
chr4 (61-132)||(1758351-1758422)
chr4 (81-132)||(16970738-16970789)
chr4 (61-132)||(25855249-25855320)
chr4 (59-101)||(11358531-11358573)
chr4 (82-132)||(39331169-39331219)
chr4 (61-101)||(5979416-5979456)
chr4 (76-132)||(7616951-7617007)
chr4 (59-123)||(8170760-8170824)
chr4 (63-131)||(21241775-21241843)
[»] chr1 (5 HSPs)
chr1 (39-136)||(14926332-14926429)
chr1 (61-135)||(51849537-51849611)
chr1 (39-123)||(35607205-35607290)
chr1 (39-89)||(6727957-6728007)
chr1 (76-132)||(33747321-33747377)
[»] chr7 (8 HSPs)
chr7 (62-132)||(10228752-10228822)
chr7 (54-132)||(46719993-46720071)
chr7 (77-132)||(23441505-23441560)
chr7 (77-132)||(23457814-23457869)
chr7 (77-132)||(23474559-23474614)
chr7 (63-132)||(20889224-20889292)
chr7 (76-132)||(8929503-8929559)
chr7 (77-129)||(23532900-23532952)
[»] chr3 (8 HSPs)
chr3 (50-132)||(43838795-43838877)
chr3 (79-136)||(47944331-47944388)
chr3 (73-134)||(47944544-47944605)
chr3 (61-96)||(33756701-33756736)
chr3 (39-86)||(48047886-48047933)
chr3 (59-116)||(38989872-38989929)
chr3 (39-83)||(26483265-26483308)
chr3 (76-128)||(34979174-34979226)
[»] chr8 (9 HSPs)
chr8 (79-132)||(23665048-23665101)
chr8 (76-132)||(7603945-7604001)
chr8 (51-99)||(10708430-10708478)
chr8 (74-132)||(28929521-28929579)
chr8 (51-132)||(29911549-29911630)
chr8 (39-123)||(6049122-6049205)
chr8 (80-132)||(7681012-7681064)
chr8 (39-119)||(24018116-24018196)
chr8 (76-132)||(41616693-41616749)
[»] chr5 (7 HSPs)
chr5 (43-132)||(34033233-34033321)
chr5 (40-135)||(7756634-7756729)
chr5 (70-132)||(8206285-8206347)
chr5 (39-89)||(29714645-29714695)
chr5 (39-72)||(14121996-14122029)
chr5 (76-132)||(23159081-23159137)
chr5 (68-132)||(42932837-42932901)
[»] chr2 (3 HSPs)
chr2 (50-131)||(29926860-29926941)
chr2 (51-132)||(6788459-6788540)
chr2 (76-132)||(40124316-40124372)
[»] scaffold0687 (1 HSPs)
scaffold0687 (76-132)||(1629-1685)
[»] scaffold0050 (1 HSPs)
scaffold0050 (76-136)||(81343-81403)


Alignment Details
Target: chr6 (Bit Score: 464; Significance: 0; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 1 - 504
Target Start/End: Complemental strand, 33187206 - 33186702
Alignment:
Q  1 acttaattattgtta-tatcaatctctataagnnnnnnngttattgtcaacattgaagaactattttaacgtcaatgactattttgactatcgaagtgca 99  Q
    ||||||||||||||| ||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  33187206 acttaattattgttaatatcaatctctataagaaaaaaagttattgtcaacattgaagaactattttaacgtcaatgactattttgactatcgaactgca 33187107  T
Q  100 catccaaaaactattttaaaatttcgatacattcagaaacatttaggggaccaaaatgactacaatcctaaattgtaaatggtaataatcaagaagaaag 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  33187106 catccaaaaactattttaaaatttcgatacattcagaaacatttacgggaccaaaatgactaccatcctaaattgtaaatggtaataatcaagaagaaag 33187007  T
Q  200 gttgtttgggaggaatatacgagatggaagatgaggacaagaaggaagtgttgttcaatgttgtttgtttatgtggaagacatggaagaaaacaattaaa 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33187006 gttgtttgggaggaatatacgagatggaagatgaggacaagaaggaagtgttgttcaatgttgtttgtttatgtggaagacatggaagaaaacaattaaa 33186907  T
Q  300 actaaaattaaataagaaaaatgatggcagagaaaagtattgtgggttcgtgtgctagaaaaatacatagagcacccgacaaagatatggtattaaggcc 399  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33186906 actaaaattaaataagaaaaatgatggcagagaaaagtattgtgggttcgtgtgctagaaaaatacatagagcacccgacaaagatatggtattaaggcc 33186807  T
Q  400 aaaataaagccattcttttctttttgtaggttctagctaccttccttgataattgatatatgaatggagaaaactatattctataaattgttcccatggt 499  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33186806 aaaataaagccattcttttctttttgtaggttctagctaccttccttgataattgatatatgaatggagaaaactatattctataaattgttcccatggt 33186707  T
Q  500 ctctg 504  Q
    |||||    
T  33186706 ctctg 33186702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 61 - 132
Target Start/End: Original strand, 25085068 - 25085139
Alignment:
Q  61 tattttaacgtcaatgactattttgactatcgaagtgcacatccaaaaactattttaaaatttcgatacatt 132  Q
    |||||||| || || |||||||||||||| | |||||||||  |||||| ||||||||||||| ||||||||    
T  25085068 tattttaatgttaaagactattttgactaacaaagtgcacaatcaaaaagtattttaaaattttgatacatt 25085139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 39 - 116
Target Start/End: Complemental strand, 27100664 - 27100587
Alignment:
Q  39 gttattgtcaacattgaagaactattttaacgtcaatgactattttgactatcgaagtgcacatccaaaaactatttt 116  Q
    |||| |||||||||||||||| |||||||||||||   |||||||||| || ||||| |||||  ||| |||||||||    
T  27100664 gttaatgtcaacattgaagaattattttaacgtcatgaactattttgattaacgaagagcacaatcaagaactatttt 27100587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 61 - 132
Target Start/End: Complemental strand, 10219660 - 10219589
Alignment:
Q  61 tattttaacgtcaatgactattttgactatcgaagtgcacatccaaaaactattttaaaatttcgatacatt 132  Q
    |||||||||||||  |||||||||||||| | |||||||||  ||  ||||||||| ||||||||| |||||    
T  10219660 tattttaacgtcagagactattttgactaacaaagtgcacaatcaggaactattttgaaatttcgacacatt 10219589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 59 - 89
Target Start/End: Original strand, 6699635 - 6699665
Alignment:
Q  59 actattttaacgtcaatgactattttgacta 89  Q
    |||||||||||||||||||||||||||||||    
T  6699635 actattttaacgtcaatgactattttgacta 6699665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 39 - 89
Target Start/End: Complemental strand, 31951703 - 31951653
Alignment:
Q  39 gttattgtcaacattgaagaactattttaacgtcaatgactattttgacta 89  Q
    ||||||||||||||||||| | ||||||||||||||  |||||||| ||||    
T  31951703 gttattgtcaacattgaaggattattttaacgtcaaaaactattttaacta 31951653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 52 - 97
Target Start/End: Complemental strand, 11590014 - 11589969
Alignment:
Q  52 ttgaagaactattttaacgtcaatgactattttgactatcgaagtg 97  Q
    |||||||||||||||||  |||| |||||||||||||| |||||||    
T  11590014 ttgaagaactattttaatatcaaagactattttgactaacgaagtg 11589969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 44 - 132
Target Start/End: Original strand, 17848794 - 17848882
Alignment:
Q  44 tgtcaacattgaagaactattttaacgtcaatgactattttgactatcgaagtgcacatccaaaaactattttaaaatttcgatacatt 132  Q
    |||||| ||| | ||| |||||||| || || |||||||||||||| |||| ||||||  |  ||| ||||||||||||| ||||||||    
T  17848794 tgtcaatattaacgaagtattttaatgttaaagactattttgactaacgaaatgcacaatctgaaattattttaaaattttgatacatt 17848882  T

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Target: scaffold0003 (Bit Score: 49; Significance: 9e-19; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 39 - 131
Target Start/End: Original strand, 109233 - 109324
Alignment:
Q  39 gttattgtcaacattgaagaactattttaacgtcaatgactattttgactatcgaagtgcacatccaaaaactattttaaaatttcgatacat 131  Q
    |||||||||||||| || | ||||||||||||||| ||||||||| ||||| | |||||||||| |||  |||||||||||||||||||||||    
T  109233 gttattgtcaacatcgagggactattttaacgtcagtgactattt-gactagcaaagtgcacattcaatgactattttaaaatttcgatacat 109324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 40 - 131
Target Start/End: Original strand, 89236 - 89326
Alignment:
Q  40 ttattgtcaacattgaagaactattttaacgtcaatgactattttgactatcgaagtgcacatccaaaaactattttaaaatttcgatacat 131  Q
    |||||||||||||||| | ||||||||||||||| |||||| ||||| || | |||||||||  |||  |||||||| |||| |||||||||    
T  89236 ttattgtcaacattgagggactattttaacgtcagtgacta-tttgattagcaaagtgcacaatcaatgactattttgaaatctcgatacat 89326  T

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Target: chr4 (Bit Score: 46; Significance: 6e-17; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 39 - 132
Target Start/End: Original strand, 51226068 - 51226161
Alignment:
Q  39 gttattgtcaacattgaagaactattttaacgtcaatgactattttgactatcgaagtgcacatccaaaaactattttaaaatttcgatacatt 132  Q
    |||||||| |||||||| ||||||||||||| ||||| ||||||||||||| |  ||||||||  ||| ||| |||||| ||||||||||||||    
T  51226068 gttattgtaaacattgaggaactattttaacttcaataactattttgactaacagagtgcacaatcaagaacaattttagaatttcgatacatt 51226161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 77 - 132
Target Start/End: Original strand, 32934139 - 32934194
Alignment:
Q  77 actattttgactatcgaagtgcacatccaaaaactattttaaaatttcgatacatt 132  Q
    ||||||||||||| | |||||||||  |||||||||||||||||||| ||||||||    
T  32934139 actattttgactagcaaagtgcacaatcaaaaactattttaaaattttgatacatt 32934194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 61 - 132
Target Start/End: Complemental strand, 36218615 - 36218544
Alignment:
Q  61 tattttaacgtcaatgactattttgactatcgaagtgcacatccaaaaactattttaaaatttcgatacatt 132  Q
    |||||||||| ||||||||||||| ||||  ||||||||||  ||| |||||||||||| ||| ||||||||    
T  36218615 tattttaacgacaatgactattttaactaatgaagtgcacaatcaataactattttaaatttttgatacatt 36218544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 59 - 132
Target Start/End: Original strand, 42375214 - 42375287
Alignment:
Q  59 actattttaacgtcaatgactattttgactatcgaagtgcacatccaaaaactattttaaaatttcgatacatt 132  Q
    |||||||||| ||||  ||||||||| |||| ||||||||| |  ||||||||| ||| |||||||||||||||    
T  42375214 actattttaatgtcagagactattttaactaacgaagtgcagaatcaaaaactactttgaaatttcgatacatt 42375287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 61 - 132
Target Start/End: Complemental strand, 1758422 - 1758351
Alignment:
Q  61 tattttaacgtcaatgactattttgactatcgaagtgcacatccaaaaactattttaaaatttcgatacatt 132  Q
    |||||||| ||||| |||||||||||||| |||||| ||||   | |||||||||| |||||| ||||||||    
T  1758422 tattttaatgtcaaggactattttgactaacgaagtacacaataagaaactattttgaaattttgatacatt 1758351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 81 - 132
Target Start/End: Complemental strand, 16970789 - 16970738
Alignment:
Q  81 ttttgactatcgaagtgcacatccaaaaactattttaaaatttcgatacatt 132  Q
    ||||||||| ||||||| ||||||||||| ||||||| ||||||||| ||||    
T  16970789 ttttgactaacgaagtgtacatccaaaaattattttagaatttcgatgcatt 16970738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 61 - 132
Target Start/End: Original strand, 25855249 - 25855320
Alignment:
Q  61 tattttaacgtcaatgactattttgactatcgaagtgcacatccaaaaactattttaaaatttcgatacatt 132  Q
    ||||||||||||||  |||||||| | ||||  ||||||||  |||| |||||||||||||||| |||||||    
T  25855249 tattttaacgtcaaaaactattttaattatcatagtgcacaatcaaagactattttaaaatttcaatacatt 25855320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 59 - 101
Target Start/End: Complemental strand, 11358573 - 11358531
Alignment:
Q  59 actattttaacgtcaatgactattttgactatcgaagtgcaca 101  Q
    |||||||||||||||  |||||||||||||| |||||||||||    
T  11358573 actattttaacgtcagagactattttgactaacgaagtgcaca 11358531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 82 - 132
Target Start/End: Original strand, 39331169 - 39331219
Alignment:
Q  82 tttgactatcgaagtgcacatccaaaaactattttaaaatttcgatacatt 132  Q
    |||||| | |||||||||||  ||||||||||||||||||||| |||||||    
T  39331169 tttgacaaacgaagtgcacaatcaaaaactattttaaaatttcaatacatt 39331219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 61 - 101
Target Start/End: Complemental strand, 5979456 - 5979416
Alignment:
Q  61 tattttaacgtcaatgactattttgactatcgaagtgcaca 101  Q
    |||||||||||||  |||||||||||||| |||||||||||    
T  5979456 tattttaacgtcagagactattttgactaacgaagtgcaca 5979416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 76 - 132
Target Start/End: Original strand, 7616951 - 7617007
Alignment:
Q  76 gactattttgactatcgaagtgcacatccaaaaactattttaaaatttcgatacatt 132  Q
    |||||||||||||| | ||||||| |  ||||||||||||||||||||  |||||||    
T  7616951 gactattttgactaacaaagtgcaaaatcaaaaactattttaaaattttaatacatt 7617007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 59 - 123
Target Start/End: Complemental strand, 8170824 - 8170760
Alignment:
Q  59 actattttaacgtcaatgactattttgactatcgaagtgcacatccaaaaactattttaaaattt 123  Q
    |||||||| ||||||  |||||||||||||| | |||||||||  |||| |||||||| ||||||    
T  8170824 actattttgacgtcagagactattttgactaacaaagtgcacaatcaaagactattttgaaattt 8170760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 63 - 131
Target Start/End: Original strand, 21241775 - 21241843
Alignment:
Q  63 ttttaacgtcaatgactattttgactatcgaagtgcacatccaaaaactattttaaaatttcgatacat 131  Q
    |||||| ||||| || |||||||| ||  ||||||||||  | |||||||||||||||||| |||||||    
T  21241775 ttttaatgtcaaagattattttgattaatgaagtgcacaatcgaaaactattttaaaattttgatacat 21241843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 39 - 136
Target Start/End: Complemental strand, 14926429 - 14926332
Alignment:
Q  39 gttattgtcaacattgaagaactattttaacgtcaatgactattttgactatcgaagtgcacatccaaaaactattttaaaatttcgatacattcaga 136  Q
    ||||||||||||||||||  | ||||||||| |||||||||| |||||||| |  ||||||||  ||  ||||||||||||||||  |||||||||||    
T  14926429 gttattgtcaacattgaatgattattttaacatcaatgactactttgactaacatagtgcacaatcagtaactattttaaaattttcatacattcaga 14926332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 61 - 135
Target Start/End: Original strand, 51849537 - 51849611
Alignment:
Q  61 tattttaacgtcaatgactattttgactatcgaagtgcacatccaaaaactattttaaaatttcgatacattcag 135  Q
    ||||| |||||||||||||||||||||||  |||||| |||  || |||||||||||||||||  ||||||||||    
T  51849537 tatttcaacgtcaatgactattttgactaaagaagtgtacaatcacaaactattttaaaattttaatacattcag 51849611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 39 - 123
Target Start/End: Complemental strand, 35607290 - 35607205
Alignment:
Q  39 gttattgtcaacattgaagaactattttaacgtcaatgactattttgactatcgaagtgcacatccaaaaact-attttaaaattt 123  Q
    ||||||||||| ||||||| | |||||||||||||  || ||||||||||| |||| ||||||  |||||||| ||||||||||||    
T  35607290 gttattgtcaatattgaaggattattttaacgtcatagattattttgactaacgaaatgcacaatcaaaaactaattttaaaattt 35607205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 39 - 89
Target Start/End: Original strand, 6727957 - 6728007
Alignment:
Q  39 gttattgtcaacattgaagaactattttaacgtcaatgactattttgacta 89  Q
    |||| |||||||||||||| |||||||||| ||||| ||||||||||||||    
T  6727957 gttagtgtcaacattgaagcactattttaaagtcaaagactattttgacta 6728007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 76 - 132
Target Start/End: Complemental strand, 33747377 - 33747321
Alignment:
Q  76 gactattttgactatcgaagtgcacatccaaaaactattttaaaatttcgatacatt 132  Q
    |||||||||||||| ||||||||| |  |||| ||| |||| |||||||||||||||    
T  33747377 gactattttgactaacgaagtgcagaatcaaatactgttttgaaatttcgatacatt 33747321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 62 - 132
Target Start/End: Complemental strand, 10228822 - 10228752
Alignment:
Q  62 attttaacgtcaatgactattttgactatcgaagtgcacatccaaaaactattttaaaatttcgatacatt 132  Q
    ||||||| ||||| |||||||||||||| |||| ||||||  |||| |||||||| |||||||||||||||    
T  10228822 attttaaggtcaaagactattttgactaacgaattgcacaatcaaagactattttgaaatttcgatacatt 10228752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 54 - 132
Target Start/End: Original strand, 46719993 - 46720071
Alignment:
Q  54 gaagaactattttaacgtcaatgactattttgactatcgaagtgcacatccaaaaactattttaaaatttcgatacatt 132  Q
    |||| ||||||||||||||||  ||||||||||||| | |||||||||  |||| || ||||||||||||| |||||||    
T  46719993 gaaggactattttaacgtcaaaaactattttgactaacaaagtgcacaatcaaataccattttaaaatttcaatacatt 46720071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 77 - 132
Target Start/End: Complemental strand, 23441560 - 23441505
Alignment:
Q  77 actattttgactatcgaagtgcacatccaaaaactattttaaaatttcgatacatt 132  Q
    |||||||||| || |||||||||||  ||| |||||||||||||||||||||||||    
T  23441560 actattttgattaacgaagtgcacaatcaataactattttaaaatttcgatacatt 23441505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 77 - 132
Target Start/End: Original strand, 23457814 - 23457869
Alignment:
Q  77 actattttgactatcgaagtgcacatccaaaaactattttaaaatttcgatacatt 132  Q
    |||||||||| || | |||||||||  ||| |||||||||||||||||||||||||    
T  23457814 actattttgattaacaaagtgcacaatcaataactattttaaaatttcgatacatt 23457869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 77 - 132
Target Start/End: Complemental strand, 23474614 - 23474559
Alignment:
Q  77 actattttgactatcgaagtgcacatccaaaaactattttaaaatttcgatacatt 132  Q
    |||||||||| || |||||||||||  ||| |||||||||||||||| ||||||||    
T  23474614 actattttgattaacgaagtgcacaatcaataactattttaaaattttgatacatt 23474559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 63 - 132
Target Start/End: Complemental strand, 20889292 - 20889224
Alignment:
Q  63 ttttaacgtcaatgactattttgactatcgaagtgcacatccaaaaactattttaaaatttcgatacatt 132  Q
    ||||||||| ||||||||||| ||||| || ||||||||   ||| |||||||||||||||||| |||||    
T  20889292 ttttaacgttaatgactattt-gactaacgcagtgcacaattaaagactattttaaaatttcgacacatt 20889224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 76 - 132
Target Start/End: Complemental strand, 8929559 - 8929503
Alignment:
Q  76 gactattttgactatcgaagtgcacatccaaaaactattttaaaatttcgatacatt 132  Q
    |||||||||||||| | ||||||| |  ||||||||||||||||||||  |||||||    
T  8929559 gactattttgactaacaaagtgcaaaatcaaaaactattttaaaattttaatacatt 8929503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 77 - 129
Target Start/End: Complemental strand, 23532952 - 23532900
Alignment:
Q  77 actattttgactatcgaagtgcacatccaaaaactattttaaaatttcgatac 129  Q
    |||||||||| || |||||| ||||  ||| ||||||||||||||||||||||    
T  23532952 actattttgattaacgaagtccacaatcaataactattttaaaatttcgatac 23532900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 50 - 132
Target Start/End: Original strand, 43838795 - 43838877
Alignment:
Q  50 cattgaagaactattttaacgtcaatgactattttgactatcgaagtgcacatccaaaaactattttaaaatttcgatacatt 132  Q
    |||||| ||| |||||||||||||| |||||||||||||| | || ||||||  |||  ||||||||||||||| ||||||||    
T  43838795 cattgatgaattattttaacgtcaaagactattttgactaacaaaatgcacaatcaatgactattttaaaattttgatacatt 43838877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 79 - 136
Target Start/End: Complemental strand, 47944388 - 47944331
Alignment:
Q  79 tattttgactatcgaagtgcacatccaaaaactattttaaaatttcgatacattcaga 136  Q
    ||||||||||| | |||||||||  |||| ||||||||||||||||||||||||||||    
T  47944388 tattttgactaacaaagtgcacaatcaaagactattttaaaatttcgatacattcaga 47944331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 73 - 134
Target Start/End: Original strand, 47944544 - 47944605
Alignment:
Q  73 aatgactattttgactatcgaagtgcacatccaaaaactattttaaaatttcgatacattca 134  Q
    |||||||||||||| || |||||||||||  |||| |||||||||||||||| |||||||||    
T  47944544 aatgactattttgattaacgaagtgcacaatcaaagactattttaaaatttcaatacattca 47944605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 61 - 96
Target Start/End: Complemental strand, 33756736 - 33756701
Alignment:
Q  61 tattttaacgtcaatgactattttgactatcgaagt 96  Q
    |||||||||||||| |||||||||||||||||||||    
T  33756736 tattttaacgtcaaagactattttgactatcgaagt 33756701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 39 - 86
Target Start/End: Complemental strand, 48047933 - 48047886
Alignment:
Q  39 gttattgtcaacattgaagaactattttaacgtcaatgactattttga 86  Q
    ||||||||||||||||| | |||||||||||||||  |||||||||||    
T  48047933 gttattgtcaacattgagggactattttaacgtcatggactattttga 48047886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 59 - 116
Target Start/End: Original strand, 38989872 - 38989929
Alignment:
Q  59 actattttaacgtcaatgactattttgactatcgaagtgcacatccaaaaactatttt 116  Q
    |||||||||||||||  |||||||||||| | |||||||||||  |||||| ||||||    
T  38989872 actattttaacgtcagagactattttgaccaacgaagtgcacaatcaaaaaatatttt 38989929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 39 - 83
Target Start/End: Original strand, 26483265 - 26483308
Alignment:
Q  39 gttattgtcaacattgaagaactattttaacgtcaatgactattt 83  Q
    ||||||||||||||| ||||  |||||||||||||||||||||||    
T  26483265 gttattgtcaacattaaagat-tattttaacgtcaatgactattt 26483308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 76 - 128
Target Start/End: Original strand, 34979174 - 34979226
Alignment:
Q  76 gactattttgactatcgaagtgcacatccaaaaactattttaaaatttcgata 128  Q
    |||||||||||||| | || ||||||   ||||||||||||||||||||||||    
T  34979174 gactattttgactaacaaaatgcacaattaaaaactattttaaaatttcgata 34979226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000008; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 79 - 132
Target Start/End: Complemental strand, 23665101 - 23665048
Alignment:
Q  79 tattttgactatcgaagtgcacatccaaaaactattttaaaatttcgatacatt 132  Q
    |||||||| || ||||||| |||| ||| |||||||||||||||||||||||||    
T  23665101 tattttgaataacgaagtgtacattcaataactattttaaaatttcgatacatt 23665048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 76 - 132
Target Start/End: Complemental strand, 7604001 - 7603945
Alignment:
Q  76 gactattttgactatcgaagtgcacatccaaaaactattttaaaatttcgatacatt 132  Q
    |||||||||||| | |||||||||||  |||||| ||||||||||||| ||||||||    
T  7604001 gactattttgaccaacgaagtgcacaatcaaaaattattttaaaattttgatacatt 7603945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 51 - 99
Target Start/End: Complemental strand, 10708478 - 10708430
Alignment:
Q  51 attgaagaactattttaacgtcaatgactattttgactatcgaagtgca 99  Q
    |||||| ||||||||||||||||| |||||||||||||| ||| |||||    
T  10708478 attgaaaaactattttaacgtcaaagactattttgactaacgaggtgca 10708430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 74 - 132
Target Start/End: Original strand, 28929521 - 28929579
Alignment:
Q  74 atgactattttgactatcgaagtgcacatccaaaaactattttaaaatttcgatacatt 132  Q
    |||||||||||||||| ||||||||| |  || |||||||| | |||||||||||||||    
T  28929521 atgactattttgactaacgaagtgcataatcagaaactattatgaaatttcgatacatt 28929579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 51 - 132
Target Start/End: Original strand, 29911549 - 29911630
Alignment:
Q  51 attgaagaactattttaacgtcaatgactattttgactatcgaagtgcacatccaaaaactattttaaaatttcgatacatt 132  Q
    ||||| ||| ||||||||||| |  |||||||||||||| ||||||| |||   |  |||||||||||||||| ||||||||    
T  29911549 attgaggaattattttaacgttagagactattttgactaacgaagtggacacttatgaactattttaaaattttgatacatt 29911630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 39 - 123
Target Start/End: Original strand, 6049122 - 6049205
Alignment:
Q  39 gttattgtcaacattgaagaactattttaacgtcaatgactattttgactatcgaagtgcacatccaaaaactattttaaaattt 123  Q
    |||||||| |||||||   |||||||||||| |||| ||  ||||| |||| |||||||||||  ||| ||||||||||||||||    
T  6049122 gttattgtgaacattgtgaaactattttaacatcaaggatcattttaacta-cgaagtgcacaatcaagaactattttaaaattt 6049205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 80 - 132
Target Start/End: Original strand, 7681012 - 7681064
Alignment:
Q  80 attttgactatcgaagtgcacatccaaaaactattttaaaatttcgatacatt 132  Q
    |||||||||| |||| ||||||  |||| ||||||||||||||| ||||||||    
T  7681012 attttgactaacgaaatgcacaatcaaatactattttaaaattttgatacatt 7681064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 39 - 119
Target Start/End: Original strand, 24018116 - 24018196
Alignment:
Q  39 gttattgtcaacattgaagaactattttaacgtcaatgactattttgactatcgaagtgcacatccaaaaactattttaaa 119  Q
    |||| |||||||| | ||| |||||||||| ||||  ||||| ||| ||||  ||||||||||  ||||||||||||||||    
T  24018116 gttaatgtcaacactaaaggactattttaatgtcagagactactttaactacagaagtgcacaatcaaaaactattttaaa 24018196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 76 - 132
Target Start/End: Complemental strand, 41616749 - 41616693
Alignment:
Q  76 gactattttgactatcgaagtgcacatccaaaaactattttaaaatttcgatacatt 132  Q
    |||||||||||||| ||||||||| | | ||| | |||||||||||||| |||||||    
T  41616749 gactattttgactaacgaagtgcataacaaaagattattttaaaatttcaatacatt 41616693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000008; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 43 - 132
Target Start/End: Complemental strand, 34033321 - 34033233
Alignment:
Q  43 ttgtcaacattgaagaactattttaacgtcaatgactattttgactatcgaagtgcacatccaaaaactattttaaaatttcgatacatt 132  Q
    |||||||||||||   |||||||| |||||| ||| |||||||||||  ||| ||||||  ||||||||| |||||||||| ||||||||    
T  34033321 ttgtcaacattgacagactatttttacgtcattgattattttgactaaagaattgcacaatcaaaaacta-tttaaaattttgatacatt 34033233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 40 - 135
Target Start/End: Original strand, 7756634 - 7756729
Alignment:
Q  40 ttattgtcaacattgaagaactattttaacgtcaatgactattttgactatcgaagtgcacatccaaaaactattttaaaatttcgatacattcag 135  Q
    |||||||||||||||| | ||||||||||||  |  |||||||||||||| |||| || |||  ||   |||||||| ||||||| ||||||||||    
T  7756634 ttattgtcaacattgagggactattttaacgcgagagactattttgactaacgaattgtacaatcattgactattttgaaatttcaatacattcag 7756729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 70 - 132
Target Start/End: Original strand, 8206285 - 8206347
Alignment:
Q  70 gtcaatgactattttgactatcgaagtgcacatccaaaaactattttaaaatttcgatacatt 132  Q
    ||||| ||||||||||||||  ||||||||||| ||   |||||| |||||||||||||||||    
T  8206285 gtcaaggactattttgactaatgaagtgcacattcagggactattataaaatttcgatacatt 8206347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 39 - 89
Target Start/End: Original strand, 29714645 - 29714695
Alignment:
Q  39 gttattgtcaacattgaagaactattttaacgtcaatgactattttgacta 89  Q
    |||| |||||||||||| ||| |||||||| ||| ||||||||||||||||    
T  29714645 gttaatgtcaacattgatgaattattttaatgtcgatgactattttgacta 29714695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 72
Target Start/End: Original strand, 14121996 - 14122029
Alignment:
Q  39 gttattgtcaacattgaagaactattttaacgtc 72  Q
    |||||| |||||||||||||||||||||||||||    
T  14121996 gttattatcaacattgaagaactattttaacgtc 14122029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 76 - 132
Target Start/End: Complemental strand, 23159137 - 23159081
Alignment:
Q  76 gactattttgactatcgaagtgcacatccaaaaactattttaaaatttcgatacatt 132  Q
    ||||||||| |||| |||| ||||||  |||| ||||||||||||||| ||||||||    
T  23159137 gactatttttactaacgaaatgcacaatcaaatactattttaaaattttgatacatt 23159081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 68 - 132
Target Start/End: Complemental strand, 42932901 - 42932837
Alignment:
Q  68 acgtcaatgactattttgactatcgaagtgcacatccaaaaactattttaaaatttcgatacatt 132  Q
    ||||| |||||||||||||| |  ||||| ||||   | ||||||||||||||||||||||||||    
T  42932901 acgtcgatgactattttgacaaatgaagtacacaatgagaaactattttaaaatttcgatacatt 42932837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000008; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 50 - 131
Target Start/End: Original strand, 29926860 - 29926941
Alignment:
Q  50 cattgaagaactattttaacgtcaatgactattttgactatcgaagtgcacatccaaaaactattttaaaatttcgatacat 131  Q
    |||||||  |||||||||||||||| ||||||||||||||  ||| ||||||  ||   ||||||||||||||| |||||||    
T  29926860 cattgaaagactattttaacgtcaaagactattttgactaatgaaatgcacaatcattgactattttaaaattttgatacat 29926941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 51 - 132
Target Start/End: Original strand, 6788459 - 6788540
Alignment:
Q  51 attgaagaactattttaacgtcaatgactattttgactatcgaagtgcacatccaaaaactattttaaaatttcgatacatt 132  Q
    ||||||| | ||||||| | |||  ||||||| |||||| | |||||||||  || ||||||||||||||||| ||||||||    
T  6788459 attgaaggattattttagcatcagagactattctgactaacaaagtgcacaatcagaaactattttaaaattttgatacatt 6788540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 76 - 132
Target Start/End: Complemental strand, 40124372 - 40124316
Alignment:
Q  76 gactattttgactatcgaagtgcacatccaaaaactattttaaaatttcgatacatt 132  Q
    |||||||||||||| || ||||||||  || | || |||||||||||||||||||||    
T  40124372 gactattttgactaacggagtgcacaatcagagaccattttaaaatttcgatacatt 40124316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0687 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0687
Description:

Target: scaffold0687; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 76 - 132
Target Start/End: Complemental strand, 1685 - 1629
Alignment:
Q  76 gactattttgactatcgaagtgcacatccaaaaactattttaaaatttcgatacatt 132  Q
    |||||||||||| | |||||||||||  |||||| ||||||||||||| ||||||||    
T  1685 gactattttgaccaacgaagtgcacaatcaaaaattattttaaaattttgatacatt 1629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 76 - 136
Target Start/End: Complemental strand, 81403 - 81343
Alignment:
Q  76 gactattttgactatcgaagtgcacatccaaaaactattttaaaatttcgatacattcaga 136  Q
    |||||||||||||| |||||||||||  || |||||||||| ||||||| ||||| |||||    
T  81403 gactattttgactaacgaagtgcacaatcataaactattttgaaatttcaatacaatcaga 81343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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