View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0734_low_24 (Length: 274)
Name: NF0734_low_24
Description: NF0734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0734_low_24 |
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Alignment Details
Target: chr7 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 55 - 253
Target Start/End: Original strand, 866797 - 866995
Alignment:
| Q |
55 |
gagatgaaggcaggttgtttgaaattgagaaggtcgaggatgtaggagatcatgaggccgatgattaaggtggttgtgacggtggtggaagagaggtcga |
154 |
Q |
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| T |
866797 |
gagatgaaggcaggttgtttgaaattgagaaggtcgaggatgtaggagatcatgaggccgatgattaaggtggttgtgacggtggtggaagagaggtcga |
866896 |
T |
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| Q |
155 |
ggatgaagagtatggcggggataagggaaattgcgattagggtattgtgggagaatgttgtagggtttttgagagatctggaggaggaggatgatgatg |
253 |
Q |
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| T |
866897 |
ggatgaagagtatggcggggataagggaaattgcgattagggtattgtgggagaatgttgtagggtttttgagagatctggaggaggaggaggatgatg |
866995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 55 - 253
Target Start/End: Original strand, 1228074 - 1228272
Alignment:
| Q |
55 |
gagatgaaggcaggttgtttgaaattgagaaggtcgaggatgtaggagatcatgaggccgatgattaaggtggttgtgacggtggtggaagagaggtcga |
154 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1228074 |
gagatgaaggcaggttgtttgaaattgagaaggtcgaggatgtaggagatcatgaggccgatgattaaggtggttgtgacggtggtggaagagaggtcga |
1228173 |
T |
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| Q |
155 |
ggatgaagagtatggcggggataagggaaattgcgattagggtattgtgggagaatgttgtagggtttttgagagatctggaggaggaggatgatgatg |
253 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
1228174 |
ggatgaagagtatggcggggataagggaaattgcgattagggtattgtgggagaatgttgtagggtttttgagagatctggaggaggaggaggatgatg |
1228272 |
T |
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