View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0734_low_26 (Length: 271)

Name: NF0734_low_26
Description: NF0734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0734_low_26
NF0734_low_26
[»] chr8 (4 HSPs)
chr8 (40-246)||(21591111-21591328)
chr8 (40-246)||(14411288-14411505)
chr8 (48-210)||(23599900-23600075)
chr8 (38-118)||(17458541-17458622)
[»] chr7 (2 HSPs)
chr7 (40-246)||(3729462-3729679)
chr7 (119-246)||(17181356-17181479)
[»] scaffold0363 (1 HSPs)
scaffold0363 (40-246)||(7206-7423)
[»] scaffold0063 (1 HSPs)
scaffold0063 (38-224)||(59328-59526)
[»] chr4 (9 HSPs)
chr4 (43-118)||(10674650-10674726)
chr4 (43-118)||(10697430-10697506)
chr4 (43-118)||(10888290-10888366)
chr4 (43-118)||(10911199-10911275)
chr4 (38-118)||(33042344-33042425)
chr4 (47-118)||(7185119-7185190)
chr4 (40-118)||(15443270-15443349)
chr4 (40-118)||(17939131-17939210)
chr4 (69-118)||(8668840-8668889)
[»] chr5 (4 HSPs)
chr5 (40-118)||(11722374-11722453)
chr5 (38-118)||(5782908-5782989)
chr5 (38-118)||(19070390-19070471)
chr5 (69-118)||(13644672-13644721)
[»] chr6 (5 HSPs)
chr6 (40-118)||(13734555-13734634)
chr6 (43-118)||(11777202-11777278)
chr6 (44-118)||(33312455-33312530)
chr6 (56-97)||(16960-17001)
chr6 (69-118)||(12434096-12434145)
[»] chr2 (2 HSPs)
chr2 (38-118)||(3867900-3867981)
chr2 (39-118)||(5114827-5114907)
[»] scaffold0238 (1 HSPs)
scaffold0238 (47-118)||(1671-1743)
[»] chr3 (1 HSPs)
chr3 (47-118)||(20972098-20972170)


Alignment Details
Target: chr8 (Bit Score: 89; Significance: 6e-43; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 40 - 246
Target Start/End: Complemental strand, 21591328 - 21591111
Alignment:
Q  40 gtgcctgctgcccatattttt-taaggtcatccgccgagtcaaagtgaaagtcataatagcctttgcctagaggcaccat--------------atgttt 124  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||              ||||||    
T  21591328 gtgcctgctgcccatatttttctaaggtcatccgccgagtcaaagtgaaagtcataatagcctttgcctagaggcaccattttccatcctgccgatgttt 21591229  T
Q  125 tccataattttccagtattgttgcttaaataatcacgtgcagaatatggtttgtctcctttattaagggtcgaacgcgccatcaacgctttcttgcaatc 224  Q
    ||||||  |||||| | ||||||||||    |||||||||| ||||||||||||||||||| ||||||||| |||| ||| ||||| | |||||||||||    
T  21591228 tccatacctttccaattttgttgctta---gatcacgtgcaaaatatggtttgtctcctttgttaagggtcaaacgagccctcaacacattcttgcaatc 21591132  T
Q  225 ttctagcccccctatgatactc 246  Q
     |||||  ||||||||||||||    
T  21591131 ctctag-tcccctatgatactc 21591111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 40 - 246
Target Start/End: Complemental strand, 14411505 - 14411288
Alignment:
Q  40 gtgcctgctgcccatattttt-taaggtcatccgccgagtcaaagtgaaagtcataatagcctttgcctagaggcaccat--------------atgttt 124  Q
    ||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||              ||||||    
T  14411505 gtgcctgctgcccatatttttctaaggtcatctgccgagtcaaagtgaaagtcataatagcctttgcctagaggcaccattttccatcctgccgatgttt 14411406  T
Q  125 tccataattttccagtattgttgcttaaataatcacgtgcagaatatggtttgtctcctttattaagggtcgaacgcgccatcaacgctttcttgcaatc 224  Q
    ||||||  || ||| | ||||||||||    |||||||||| ||||||||||||||||||| ||||||||| |||| ||| ||||| | |||||||||||    
T  14411405 tccataccttgccaattttgttgctta---gatcacgtgcaaaatatggtttgtctcctttgttaagggtcaaacgtgccctcaacacattcttgcaatc 14411309  T
Q  225 ttctagcccccctatgatactc 246  Q
     |||||  ||||||||||||||    
T  14411308 ctctag-tcccctatgatactc 14411288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 48 - 210
Target Start/End: Complemental strand, 23600075 - 23599900
Alignment:
Q  48 tgcccatattttt-taaggtcatccgccgagtcaaagtgaaagtcataatagcctttgcctagaggcaccat---------------atgttttccataa 131  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||               ||||||||||||     
T  23600075 tgcccatatttttctaaggtcatccgccgagtcaaagtgaaagtcataatagcctttgtctagaggcaccattttccatccttgtcgatgttttccatac 23599976  T
Q  132 ttttccagtattgttgcttaaataatcacgtgcagaatatggtttgtctcctttattaagggtcgaacgcgccatcaac 210  Q
     |||||| | ||||||||||    |||||||||| ||||||||||||||||||| ||||||||| |||||||| |||||    
T  23599975 gtttccaattttgttgctta---gatcacgtgcaaaatatggtttgtctcctttgttaagggtcaaacgcgccctcaac 23599900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 38 - 118
Target Start/End: Complemental strand, 17458622 - 17458541
Alignment:
Q  38 ctgtgcctgctgcccatatttttta-aggtcatccgccgagtcaaagtgaaagtcataatagcctttgcctagaggcaccat 118  Q
    ||||||||||||||||||||||    || ||||||||| |||||||||| |||||||| || |||||||| |||||||||||    
T  17458622 ctgtgcctgctgcccatattttccgtagatcatccgccaagtcaaagtggaagtcatagtaacctttgccgagaggcaccat 17458541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 40 - 246
Target Start/End: Original strand, 3729462 - 3729679
Alignment:
Q  40 gtgcctgctgcccatattttt-taaggtcatccgccgagtcaaagtgaaagtcataatagcctttgcctagaggcaccat--------------atgttt 124  Q
    |||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||              ||||||    
T  3729462 gtgcctgctggccatatttttctaaggtcatccgccgagtcaaagtgaaagtcataatagcctttgcctagaggcaccattttccatcctgccgatgttt 3729561  T
Q  125 tccataattttccagtattgttgcttaaataatcacgtgcagaatatggtttgtctcctttattaagggtcgaacgcgccatcaacgctttcttgcaatc 224  Q
    ||||||  |||||| | ||||||||||    |||||||||| ||||||||||||||||||| ||||||||| |||||||| ||| | | |||||||||||    
T  3729562 tccatacctttccaattttgttgctta---gatcacgtgcaaaatatggtttgtctcctttgttaagggtcaaacgcgccctcagcacattcttgcaatc 3729658  T
Q  225 ttctagcccccctatgatactc 246  Q
     |||||  ||||||||||||||    
T  3729659 ctctag-tcccctatgatactc 3729679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 119 - 246
Target Start/End: Complemental strand, 17181479 - 17181356
Alignment:
Q  119 atgttttccataattttccagtattgttgcttaaataatcacgtgcagaatatggtttgtctcctttattaagggtcgaacgcgccatcaacgctttctt 218  Q
    ||||||||||||  |||||| | |||||||||| ||   |||||||| ||||||||||||||||||| ||||||||| |||||||| ||||| | |||||    
T  17181479 atgttttccatacctttccaattttgttgcttagat---cacgtgcaaaatatggtttgtctcctttgttaagggtcaaacgcgccctcaacacattctt 17181383  T
Q  219 gcaatcttctagcccccctatgatactc 246  Q
    |||||| |||||  ||||||||||||||    
T  17181382 gcaatcctctag-tcccctatgatactc 17181356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0363 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: scaffold0363
Description:

Target: scaffold0363; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 40 - 246
Target Start/End: Original strand, 7206 - 7423
Alignment:
Q  40 gtgcctgctgcccatattttt-taaggtcatccgccgagtcaaagtgaaagtcataatagcctttgcctagaggcaccat--------------atgttt 124  Q
    ||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||              ||||||    
T  7206 gtgcctgctgcccatatttttctaaggtcatctgccgagtcaaagtgaaagtcataatagcctttgcctagaggcaccattttccatcctgccgatgttt 7305  T
Q  125 tccataattttccagtattgttgcttaaataatcacgtgcagaatatggtttgtctcctttattaagggtcgaacgcgccatcaacgctttcttgcaatc 224  Q
    ||||||  || ||| | ||||||||||    |||||||||| ||||||||||||||||||| ||||||||| |||| ||| ||||| | |||||||||||    
T  7306 tccataccttgccaattttgttgctta---gatcacgtgcaaaatatggtttgtctcctttgttaagggtcaaacgtgccctcaacacattcttgcaatc 7402  T
Q  225 ttctagcccccctatgatactc 246  Q
     |||||  ||||||||||||||    
T  7403 ctctag-tcccctatgatactc 7423  T

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Target: scaffold0063 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 38 - 224
Target Start/End: Complemental strand, 59526 - 59328
Alignment:
Q  38 ctgtgcctgctgcccatattttt-taaggtcatccgccgagtcaaagtgaaagtcataatagcctttgcctagaggcaccat--------------atgt 122  Q
    ||||||||||||||||||||||| | |||||||| ||| | |||||||||||||||||||||||||||||||||||||||||              ||||    
T  59526 ctgtgcctgctgcccatatttttctcaggtcatctgccaaatcaaagtgaaagtcataatagcctttgcctagaggcaccattttccatcctaacgatgt 59427  T
Q  123 tttccataattttccagtattgttgcttaaataatcacgtgcagaatatggtttgtctcctttattaagggtcgaacgcgccatcaacgctttcttgcaa 222  Q
    ||||||||  ||| || | |||||||||   | ||||||||||||||||||||| |||| ||| ||||||||| || ||||| | ||||| |||||||||    
T  59426 tttccatagctttgcaattttgttgctt---tgatcacgtgcagaatatggtttatctcttttgttaagggtcaaatgcgcccttaacgcattcttgcaa 59330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 43 - 118
Target Start/End: Complemental strand, 10674726 - 10674650
Alignment:
Q  43 cctgctgcccatattttt-taaggtcatccgccgagtcaaagtgaaagtcataatagcctttgcctagaggcaccat 118  Q
    ||||||||||||||| || |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  10674726 cctgctgcccatattcttctaaggtcatccgccgattcaaagtgaaagtcataatagcctttgcctagaggcaccat 10674650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 43 - 118
Target Start/End: Original strand, 10697430 - 10697506
Alignment:
Q  43 cctgctgcccatattttt-taaggtcatccgccgagtcaaagtgaaagtcataatagcctttgcctagaggcaccat 118  Q
    ||||||||||||||| || |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  10697430 cctgctgcccatattcttctaaggtcatccgccgattcaaagtgaaagtcataatagcctttgcctagaggcaccat 10697506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 43 - 118
Target Start/End: Complemental strand, 10888366 - 10888290
Alignment:
Q  43 cctgctgcccatattttt-taaggtcatccgccgagtcaaagtgaaagtcataatagcctttgcctagaggcaccat 118  Q
    ||||||||||||||| || |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  10888366 cctgctgcccatattcttctaaggtcatccgccgattcaaagtgaaagtcataatagcctttgcctagaggcaccat 10888290  T

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Target: chr4; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 43 - 118
Target Start/End: Original strand, 10911199 - 10911275
Alignment:
Q  43 cctgctgcccatattttt-taaggtcatccgccgagtcaaagtgaaagtcataatagcctttgcctagaggcaccat 118  Q
    ||||||||||||||| || |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  10911199 cctgctgcccatattcttctaaggtcatccgccgattcaaagtgaaagtcataatagcctttgcctagaggcaccat 10911275  T

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Target: chr4; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 38 - 118
Target Start/End: Original strand, 33042344 - 33042425
Alignment:
Q  38 ctgtgcctgctgcccatattttt-taaggtcatccgccgagtcaaagtgaaagtcataatagcctttgcctagaggcaccat 118  Q
    |||||| |||||||||||||||  | || ||||||||||||||||||||||||||||| || |||||||| |||||||||||    
T  33042344 ctgtgcatgctgcccatattttccttagatcatccgccgagtcaaagtgaaagtcatagtaacctttgccgagaggcaccat 33042425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 47 - 118
Target Start/End: Complemental strand, 7185190 - 7185119
Alignment:
Q  47 ctgcccatattttttaaggtcatccgccgagtcaaagtgaaagtcataatagcctttgcctagaggcaccat 118  Q
    ||||| ||||| ||| | ||||||||||||||||||||||||||||||||| || || || |||||||||||    
T  7185190 ctgccaatattcttttaagtcatccgccgagtcaaagtgaaagtcataataacccttaccaagaggcaccat 7185119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 118
Target Start/End: Original strand, 15443270 - 15443349
Alignment:
Q  40 gtgcctgctgcccatatttt-ttaaggtcatccgccgagtcaaagtgaaagtcataatagcctttgcctagaggcaccat 118  Q
    ||||||||| |||||||||| || |  || |||||||||||||| |||||||||||||| || ||||| |||||||||||    
T  15443270 gtgcctgctacccatattttctttaaatcctccgccgagtcaaaatgaaagtcataataccccttgccaagaggcaccat 15443349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 40 - 118
Target Start/End: Complemental strand, 17939210 - 17939131
Alignment:
Q  40 gtgcctgctgcccatatttt-ttaaggtcatccgccgagtcaaagtgaaagtcataatagcctttgcctagaggcaccat 118  Q
    ||||||||| |||||||||| || |  || |||||||||||||| |||||||||||||| || ||||| |||| ||||||    
T  17939210 gtgcctgctacccatattttctttaaatcctccgccgagtcaaaatgaaagtcataataccccttgccaagagacaccat 17939131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 69 - 118
Target Start/End: Original strand, 8668840 - 8668889
Alignment:
Q  69 tccgccgagtcaaagtgaaagtcataatagcctttgcctagaggcaccat 118  Q
    |||||||||||||| ||||| ||||| || |||||||| |||||||||||    
T  8668840 tccgccgagtcaaaatgaaaatcatagtatcctttgccgagaggcaccat 8668889  T

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Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 40 - 118
Target Start/End: Complemental strand, 11722453 - 11722374
Alignment:
Q  40 gtgcctgctgcccatattttt-taaggtcatccgccgagtcaaagtgaaagtcataatagcctttgcctagaggcaccat 118  Q
    |||||||||||||||||| || ||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||    
T  11722453 gtgcctgctgcccatattcttctaaggtcatgcgccgagtcaaagtgaaaatcataatagcctttgcctagaggcaccat 11722374  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 38 - 118
Target Start/End: Original strand, 5782908 - 5782989
Alignment:
Q  38 ctgtgcctgctgcccatatttttta-aggtcatccgccgagtcaaagtgaaagtcataatagcctttgcctagaggcaccat 118  Q
    |||| |||||||||||||||||    || |||||| |||||||||||||||||||||| || |||||||| |||||||||||    
T  5782908 ctgtacctgctgcccatattttccgtagatcatccaccgagtcaaagtgaaagtcatagtaacctttgccaagaggcaccat 5782989  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 38 - 118
Target Start/End: Original strand, 19070390 - 19070471
Alignment:
Q  38 ctgtgcctgctgcccatatttttta-aggtcatccgccgagtcaaagtgaaagtcataatagcctttgcctagaggcaccat 118  Q
    |||| |||||||||||||||||    || ||||||||||||||||||||||||||||| || |||||||| |||||| ||||    
T  19070390 ctgtacctgctgcccatattttccgtagatcatccgccgagtcaaagtgaaagtcatagtaacctttgccaagaggcgccat 19070471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 69 - 118
Target Start/End: Original strand, 13644672 - 13644721
Alignment:
Q  69 tccgccgagtcaaagtgaaagtcataatagcctttgcctagaggcaccat 118  Q
    |||||||||||||| |||||||||||||| || ||||| |||||||||||    
T  13644672 tccgccgagtcaaaatgaaagtcataataccccttgccaagaggcaccat 13644721  T

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Target: chr6 (Bit Score: 56; Significance: 3e-23; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 40 - 118
Target Start/End: Complemental strand, 13734634 - 13734555
Alignment:
Q  40 gtgcctgctgcccatattttt-taaggtcatccgccgagtcaaagtgaaagtcataatagcctttgcctagaggcaccat 118  Q
    |||| |||||||||||||||| |||||||||||| ||||||||||||||||||||||||| |||||||||||| ||||||    
T  13734634 gtgcgtgctgcccatatttttctaaggtcatccgtcgagtcaaagtgaaagtcataatagtctttgcctagagtcaccat 13734555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 43 - 118
Target Start/End: Original strand, 11777202 - 11777278
Alignment:
Q  43 cctgctgcccatatttttta-aggtcatccgccgagtcaaagtgaaagtcataatagcctttgcctagaggcaccat 118  Q
    ||||||||||||||||||   || |||||||||| |||||||||||||||||| || |||||| | |||||||||||    
T  11777202 cctgctgcccatatttttcgtagatcatccgccgtgtcaaagtgaaagtcatagtaacctttgtcgagaggcaccat 11777278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 44 - 118
Target Start/End: Complemental strand, 33312530 - 33312455
Alignment:
Q  44 ctgctgcccatatttt-ttaaggtcatccgccgagtcaaagtgaaagtcataatagcctttgcctagaggcaccat 118  Q
    |||||||||||||||| || |  || |||||||||||||| |||||||||||||| || ||||| |||||||||||    
T  33312530 ctgctgcccatattttctttaaatcctccgccgagtcaaaatgaaagtcataataacccttgccaagaggcaccat 33312455  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 56 - 97
Target Start/End: Original strand, 16960 - 17001
Alignment:
Q  56 ttttttaaggtcatccgccgagtcaaagtgaaagtcataata 97  Q
    |||||| | ||| |||||||||||||||||||||||||||||    
T  16960 ttttttgaagtcctccgccgagtcaaagtgaaagtcataata 17001  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 69 - 118
Target Start/End: Complemental strand, 12434145 - 12434096
Alignment:
Q  69 tccgccgagtcaaagtgaaagtcataatagcctttgcctagaggcaccat 118  Q
    ||||| |||||||| |||||||||||||| || ||||| |||||||||||    
T  12434145 tccgctgagtcaaaatgaaagtcataataacccttgccaagaggcaccat 12434096  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 38 - 118
Target Start/End: Complemental strand, 3867981 - 3867900
Alignment:
Q  38 ctgtgcctgctgcccatatttttta-aggtcatccgccgagtcaaagtgaaagtcataatagcctttgcctagaggcaccat 118  Q
    |||| ||| |||||||||||||||  | ||| |||||||||| |||||||||||||||||| || || || |||||||||||    
T  3867981 ctgtccctactgcccatattttttttaagtcctccgccgagtaaaagtgaaagtcataataccccttaccaagaggcaccat 3867900  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 118
Target Start/End: Complemental strand, 5114907 - 5114827
Alignment:
Q  39 tgtgcctgctgcccatattttt-taaggtcatccgccgagtcaaagtgaaagtcataatagcctttgcctagaggcaccat 118  Q
    |||||||||||||||||| ||  | || || || ||||||||||| ||||||||||| || |||||||| |||||||||||    
T  5114907 tgtgcctgctgcccatatcttccttagatcgtcagccgagtcaaaatgaaagtcatagtaacctttgccgagaggcaccat 5114827  T

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Target: scaffold0238 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 118
Target Start/End: Original strand, 1671 - 1743
Alignment:
Q  47 ctgcccatatttttta-aggtcatccgccgagtcaaagtgaaagtcataatagcctttgcctagaggcaccat 118  Q
    |||||||||||||||  | ||| |||||||||| |||||||||||||||||| || || || |||||||||||    
T  1671 ctgcccatattttttttaagtcctccgccgagttaaagtgaaagtcataataacccttaccaagaggcaccat 1743  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 47 - 118
Target Start/End: Original strand, 20972098 - 20972170
Alignment:
Q  47 ctgcccatatttttta-aggtcatccgccgagtcaaagtgaaagtcataatagcctttgcctagaggcaccat 118  Q
    |||||||||||||||  | ||| ||||  ||||||||||||||||||||||| || || || |||||||||||    
T  20972098 ctgcccatattttttttaagtcctccgttgagtcaaagtgaaagtcataataccccttaccaagaggcaccat 20972170  T

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