View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0734_low_27 (Length: 267)
Name: NF0734_low_27
Description: NF0734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0734_low_27 |
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Alignment Details
Target: chr2 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 29 - 220
Target Start/End: Original strand, 44703961 - 44704152
Alignment:
| Q |
29 |
aggcagcgtcaaaaccaggcttaacacaaagagataacacttcttttccaagcataacacctgtggtggggtccactttgcgatgaatctcagctacgtt |
128 |
Q |
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| T |
44703961 |
aggcagcgtcaaaaccaggcttaacacaaagagataacacttcttttccaagcataacacctgtggtggggtccactttgcgatgaatctcagctacgtt |
44704060 |
T |
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| Q |
129 |
ttccttcattgcgttaaaaacggtgcaacaacgttgagagaagcaaccttcaatgtggtactcctcaccagggttatcgtacacctccactg |
220 |
Q |
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| T |
44704061 |
ttccttcattccgttaaaaaccgtgcaacaacgttgagagaagcaaccttcaatgtggtactcctcaccagggttatcgtacacctccactg |
44704152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 31 - 220
Target Start/End: Original strand, 44714666 - 44714855
Alignment:
| Q |
31 |
gcagcgtcaaaaccaggcttaacacaaagagataacacttcttttccaagcataacacctgtggtggggtccactttgcgatgaatctcagctacgtttt |
130 |
Q |
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| T |
44714666 |
gcagcatcaaaaccaggcttaacacaaagagagaacacttccttcccaagcgtattacctgtagtggggtccactttacgataaatctcagccacaattt |
44714765 |
T |
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| Q |
131 |
ccttcattgcgttaaaaacggtgcaacaacgttgagagaagcaaccttcaatgtggtactcctcaccagggttatcgtacacctccactg |
220 |
Q |
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| T |
44714766 |
ccttcatcgcgttaaaaactttgcaaccacgttgagagaaacacccttcgatatggtactcctcacctgggttatcgtacacctccactg |
44714855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 64 - 122
Target Start/End: Complemental strand, 2278213 - 2278155
Alignment:
| Q |
64 |
aacacttcttttccaagcataacacctgtggtggggtccactttgcgatgaatctcagc |
122 |
Q |
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| T |
2278213 |
aacacttctttcccaagcataacactagtggtggggtccactttacgacgaatctcagc |
2278155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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