View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0734_low_33 (Length: 260)
Name: NF0734_low_33
Description: NF0734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0734_low_33 |
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Alignment Details
Target: chr1 (Bit Score: 176; Significance: 7e-95; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 24 - 223
Target Start/End: Original strand, 46679931 - 46680130
Alignment:
| Q |
24 |
gatttaaaaaagaaagaaacctaagcagagttcctattgtaacaacaaatgacaaataaaattgtccaaattctaatgttgagttcctgccaccactgta |
123 |
Q |
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| T |
46679931 |
gatttaaaaaagaaagaaacctaagcagagttcctattgtaacaacaaatgacaaataaaattgtccatattctaatgtcgagttcctgccaccactgta |
46680030 |
T |
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| Q |
124 |
actaggagataattcaacttcaatttcatatttaggattacaattggatatacttttgtcaataatacaagtattgatactggtaattgatgaaagttat |
223 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| || |||||||||||||||||| |
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| T |
46680031 |
actaggagataattcaacttcaatttcctatttaggattacaattggatatactcttgtcaataatacaagtattgatgctagtaattgatgaaagttat |
46680130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 34 - 152
Target Start/End: Original strand, 46702281 - 46702396
Alignment:
| Q |
34 |
agaaagaaacctaagcagagttcctattgtaacaacaaatgacaaataaaattgtccaaattctaatgttgagttcctgccaccactgtaactaggagat |
133 |
Q |
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|||||||||||| |||| || |||||||||||||| | || || |||||||||| ||| |||||| |||||||||||||||||| | |||||||| |
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| T |
46702281 |
agaaagaaacctgagcatagctcctattgtaacaaaa---gaaaaccaaaattgtcctcattttaatgtcgagttcctgccaccactgcgagtaggagat |
46702377 |
T |
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| Q |
134 |
aattcaacttcaatttcat |
152 |
Q |
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||||||||||||||||||| |
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| T |
46702378 |
aattcaacttcaatttcat |
46702396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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