View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0734_low_37 (Length: 251)
Name: NF0734_low_37
Description: NF0734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0734_low_37 |
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Alignment Details
Target: chr8 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 15 - 245
Target Start/End: Original strand, 41794549 - 41794779
Alignment:
| Q |
15 |
aacctgtgtacttcactttaagaaaccaaacaggagcccaaacaaccatccctccatatcttcattaaattattatttcccatggtacatgttttctcca |
114 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41794549 |
aaccagtgtacttcactttaagaaaccaaacaggagcccaaacaaccatccctccatatcttcattaaattattatttcccatggtacatgttttctcca |
41794648 |
T |
|
| Q |
115 |
cacaagaattactcctctactgcaatctcccaaaccaacctgcatagtgaaaactccaatttagactgaacattatttcagactaactatccaaataatc |
214 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41794649 |
cacaagaattactcctctactacaatctcccaaaccaacctgcatagtgaaaactccaatttagactgaacattatttcagactaactatccaaataatc |
41794748 |
T |
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| Q |
215 |
agaaccaaaataaatcaaacaaccataactc |
245 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
41794749 |
agaaccaaaataaatcaaacaaccataactc |
41794779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 33 - 245
Target Start/End: Original strand, 41794844 - 41795056
Alignment:
| Q |
33 |
taagaaaccaaacaggagcccaaacaaccatccctccatatcttcattaaattattatttcccatggtacatgttttctccacacaagaattactcctct |
132 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41794844 |
taagaaaccaaacaggagcccaaacaaccatccctccatatcttcattaaattattatttcccatggtacatgttttctccacacaagaattactcctct |
41794943 |
T |
|
| Q |
133 |
actgcaatctcccaaaccaacctgcatagtgaaaactccaatttagactgaacattatttcagactaactatccaaataatcagaaccaaaataaatcaa |
232 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41794944 |
acttcaatctcccaaaccaacctgcatagtgaaaactccaatttagactgaacattatttcagactaactatccaaataatcagaaccaaaataaatcaa |
41795043 |
T |
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| Q |
233 |
acaaccataactc |
245 |
Q |
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||||||||||||| |
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| T |
41795044 |
acaaccataactc |
41795056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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