View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0734_low_45 (Length: 213)
Name: NF0734_low_45
Description: NF0734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0734_low_45 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 79 - 213
Target Start/End: Original strand, 2084334 - 2084468
Alignment:
| Q |
79 |
gacggatgggaaaaacagaagactagattcttgcagctacctcctgggaggactccatcagcacagtcagatacacgtgtacagtttcaccaggatcaga |
178 |
Q |
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| T |
2084334 |
gacggatgggaaaaacagaagactagattcttgcagctacctcctgggaggactccatcagcacagtcagatacacgtgtacagtttcaccaggatcaga |
2084433 |
T |
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| Q |
179 |
tacagttcttggtcgtacacgaaactcagctcgcc |
213 |
Q |
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| T |
2084434 |
tacagttcttggtcgtacacgaaactcagctcgcc |
2084468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 85 - 209
Target Start/End: Complemental strand, 44872514 - 44872390
Alignment:
| Q |
85 |
tgggaaaaacagaagactagattcttgcagctacctcctgggaggactccatcagcacagtcagatacacgtgtacagtttcaccaggatcagatacagt |
184 |
Q |
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| T |
44872514 |
tgggagaagcagaagaatagattcttgcaatttcctgctgggaggactccacctgcacaggcagatacacgggtacaatttcatcaggaccagttccgct |
44872415 |
T |
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| Q |
185 |
tcttggtcgtacacgaaactcagct |
209 |
Q |
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| T |
44872414 |
tcttggtggtacatgaaactcagct |
44872390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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